def vocab_from_tsv(tsv_file_path, lower=False, lock_word_vocab=False, lock_char_vocab=True, lock_tag_vocab=True) \
-> Tuple[VocabTF, VocabTF, VocabTF]:
word_vocab = VocabTF()
char_vocab = VocabTF()
tag_vocab = VocabTF(unk_token=None)
with open(tsv_file_path, encoding='utf-8') as tsv_file:
for line in tsv_file:
cells = line.strip().split()
if cells:
word, tag = cells
if lower:
word_vocab.add(word.lower())
else:
word_vocab.add(word)
char_vocab.update(list(word))
tag_vocab.add(tag)
if lock_word_vocab:
word_vocab.lock()
if lock_char_vocab:
char_vocab.lock()
if lock_tag_vocab:
tag_vocab.lock()
return word_vocab, char_vocab, tag_vocab
class TACREDTransform(Transform):
def __init__(self,
config: SerializableDict = None,
map_x=True,
map_y=True,
lower=False,
**kwargs) -> None:
super().__init__(**merge_locals_kwargs(locals(), kwargs))
self.token_vocab = VocabTF()
self.pos_vocab = VocabTF(pad_token=None, unk_token=None)
self.ner_vocab = VocabTF(pad_token=None)
self.deprel_vocab = VocabTF(pad_token=None, unk_token=None)
self.rel_vocab = VocabTF(pad_token=None, unk_token=None)
def fit(self, trn_path: str, **kwargs) -> int:
count = 0
for (tokens, pos, ner, head, deprel, subj_positions, obj_positions,
subj_type, obj_type), relation in self.file_to_samples(trn_path,
gold=True):
count += 1
self.token_vocab.update(tokens)
self.pos_vocab.update(pos)
self.ner_vocab.update(ner)
self.deprel_vocab.update(deprel)
self.rel_vocab.add(relation)
return count
def file_to_inputs(self, filepath: str, gold=True):
data = load_json(filepath)
for d in data:
tokens = list(d['token'])
ss, se = d['subj_start'], d['subj_end']
os, oe = d['obj_start'], d['obj_end']
pos = d['stanford_pos']
ner = d['stanford_ner']
deprel = d['stanford_deprel']
head = [int(x) for x in d['stanford_head']]
assert any([x == 0 for x in head])
relation = d['relation']
yield (tokens, pos, ner, head, deprel, ss, se, os, oe), relation
def inputs_to_samples(self, inputs, gold=False):
for input in inputs:
if gold:
(tokens, pos, ner, head, deprel, ss, se, os,
oe), relation = input
else:
tokens, pos, ner, head, deprel, ss, se, os, oe = input
relation = self.rel_vocab.safe_pad_token
l = len(tokens)
subj_positions = get_positions(ss, se, l)
obj_positions = get_positions(os, oe, l)
subj_type = ner[ss]
obj_type = ner[os]
# anonymize tokens
tokens[ss:se + 1] = ['SUBJ-' + subj_type] * (se - ss + 1)
tokens[os:oe + 1] = ['OBJ-' + obj_type] * (oe - os + 1)
# min head is 0, but root is not included in tokens, so take 1 off from each head
head = [h - 1 for h in head]
yield (tokens, pos, ner, head, deprel, subj_positions,
obj_positions, subj_type, obj_type), relation
def create_types_shapes_values(self) -> Tuple[Tuple, Tuple, Tuple]:
# (tokens, pos, ner, head, deprel, subj_positions, obj_positions, subj_type, obj_type), relation
types = (tf.string, tf.string, tf.string, tf.int32, tf.string,
tf.int32, tf.int32, tf.string, tf.string), tf.string
shapes = ([None], [None], [None], [None], [None], [None], [None], [],
[]), []
pads = (self.token_vocab.safe_pad_token, self.pos_vocab.safe_pad_token,
self.ner_vocab.safe_pad_token, 0,
self.deprel_vocab.safe_pad_token, 0, 0,
self.ner_vocab.safe_pad_token,
self.ner_vocab.safe_pad_token), self.rel_vocab.safe_pad_token
return types, shapes, pads
def x_to_idx(self, x) -> Union[tf.Tensor, Tuple]:
tokens, pos, ner, head, deprel, subj_positions, obj_positions, subj_type, obj_type = x
tokens = self.token_vocab.lookup(tokens)
pos = self.pos_vocab.lookup(pos)
ner = self.ner_vocab.lookup(ner)
deprel = self.deprel_vocab.lookup(deprel)
subj_type = self.ner_vocab.lookup(subj_type)
obj_type = self.ner_vocab.lookup(obj_type)
return tokens, pos, ner, head, deprel, subj_positions, obj_positions, subj_type, obj_type
def y_to_idx(self, y) -> tf.Tensor:
return self.rel_vocab.lookup(y)
class CoNLL_Transformer_Transform(CoNLL_DEP_Transform):
def __init__(self, config: SerializableDict = None, map_x=True, map_y=True,
lower=True, n_buckets=32, min_freq=0, max_seq_length=256, use_pos=False,
mask_p=None, graph=False, topk=None,
**kwargs) -> None:
super().__init__(**merge_locals_kwargs(locals(), kwargs))
self.tokenizer: PreTrainedTokenizer = None
self.transformer_config: PretrainedConfig = None
if graph:
self.orphan_relation = ROOT
def lock_vocabs(self):
super().lock_vocabs()
if self.graph:
CoNLL_SDP_Transform._find_orphan_relation(self)
def fit(self, trn_path: str, **kwargs) -> int:
if self.config.get('joint_pos', None):
self.config.use_pos = True
if self.graph:
# noinspection PyCallByClass
num = CoNLL_SDP_Transform.fit(self, trn_path, **kwargs)
else:
num = super().fit(trn_path, **kwargs)
if self.config.get('topk', None):
counter = Counter()
for sent in self.file_to_samples(trn_path, gold=True):
for idx, cell in enumerate(sent):
form, head, deprel = cell
counter[form] += 1
self.topk_vocab = VocabTF()
for k, v in counter.most_common(self.config.topk):
self.topk_vocab.add(k)
return num
def inputs_to_samples(self, inputs, gold=False):
if self.graph:
yield from CoNLL_SDP_Transform.inputs_to_samples(self, inputs, gold)
else:
yield from super().inputs_to_samples(inputs, gold)
def file_to_inputs(self, filepath: str, gold=True):
if self.graph:
yield from CoNLL_SDP_Transform.file_to_inputs(self, filepath, gold)
else:
yield from super().file_to_inputs(filepath, gold)
@property
def mask_p(self) -> float:
return self.config.get('mask_p', None)
@property
def graph(self):
return self.config.get('graph', None)
def create_types_shapes_values(self) -> Tuple[Tuple, Tuple, Tuple]:
mask_p = self.mask_p
types = (tf.int64, (tf.int64, tf.int64, tf.int64)), (tf.bool if self.graph else tf.int64, tf.int64, tf.int64) if mask_p else (
tf.bool if self.graph else tf.int64, tf.int64)
if self.graph:
shapes = ([None, None], ([None, None], [None, None], [None, None])), (
[None, None, None], [None, None, None], [None, None]) if mask_p else (
[None, None, None], [None, None, None])
else:
shapes = ([None, None], ([None, None], [None, None], [None, None])), (
[None, None], [None, None], [None, None]) if mask_p else ([None, None], [None, None])
values = (self.form_vocab.safe_pad_token_idx, (0, 0, 0)), \
(0, self.rel_vocab.safe_pad_token_idx, 0) if mask_p else (0, self.rel_vocab.safe_pad_token_idx)
types_shapes_values = types, shapes, values
if self.use_pos:
types_shapes_values = [((shapes[0][0], shapes[0][1] + (shapes[0][0],)), shapes[1]) for shapes in
types_shapes_values]
return types_shapes_values
def X_to_inputs(self, X: Union[tf.Tensor, Tuple[tf.Tensor]]) -> Iterable:
form_batch, feat, prefix_mask = X
sents = []
for form_sent, length in zip(form_batch, tf.math.count_nonzero(prefix_mask, axis=-1)):
forms = tolist(form_sent)[1:length + 1]
sents.append([self.form_vocab.idx_to_token[f] for f in forms])
return sents
def batched_inputs_to_batches(self, corpus, indices, shuffle):
use_pos = self.use_pos
if use_pos:
raw_batch = [[], [], [], []]
else:
raw_batch = [[], [], []]
if self.graph:
max_len = len(max([corpus[i] for i in indices], key=len))
for idx in indices:
arc = np.zeros((max_len, max_len), dtype=np.bool)
rel = np.zeros((max_len, max_len), dtype=np.int64)
for b in raw_batch[:2 if use_pos else 1]:
b.append([])
for m, cells in enumerate(corpus[idx]):
if use_pos:
for b, c, v in zip(raw_batch, cells, [None, self.cpos_vocab]):
b[-1].append(v.get_idx_without_add(c) if v else c)
else:
for b, c, v in zip(raw_batch, cells, [None]):
b[-1].append(c)
for n, r in zip(cells[-2], cells[-1]):
arc[m, n] = True
rid = self.rel_vocab.get_idx_without_add(r)
if rid is None:
logger.warning(f'Relation OOV: {r} not exists in train')
continue
rel[m, n] = rid
raw_batch[-2].append(arc)
raw_batch[-1].append(rel)
else:
for idx in indices:
for s in raw_batch:
s.append([])
for cells in corpus[idx]:
if use_pos:
for s, c, v in zip(raw_batch, cells, [None, self.cpos_vocab, None, self.rel_vocab]):
s[-1].append(v.get_idx_without_add(c) if v else c)
else:
for s, c, v in zip(raw_batch, cells, [None, None, self.rel_vocab]):
s[-1].append(v.get_idx_without_add(c) if v else c)
# Transformer tokenizing
config = self.transformer_config
tokenizer = self.tokenizer
xlnet = config_is(config, 'xlnet')
roberta = config_is(config, 'roberta')
pad_token = tokenizer.pad_token
pad_token_id = tokenizer.convert_tokens_to_ids([pad_token])[0]
cls_token = tokenizer.cls_token
sep_token = tokenizer.sep_token
max_seq_length = self.config.max_seq_length
batch_forms = []
batch_input_ids = []
batch_input_mask = []
batch_prefix_offset = []
mask_p = self.mask_p
if mask_p:
batch_masked_offsets = []
mask_token_id = tokenizer.mask_token_id
for sent_idx, sent in enumerate(raw_batch[0]):
batch_forms.append([self.form_vocab.get_idx_without_add(token) for token in sent])
sent = adjust_tokens_for_transformers(sent)
sent = sent[1:] # remove <root> use [CLS] instead
pad_label_idx = self.form_vocab.pad_idx
input_ids, input_mask, segment_ids, prefix_mask = \
convert_examples_to_features(sent,
max_seq_length,
tokenizer,
cls_token_at_end=xlnet,
# xlnet has a cls token at the end
cls_token=cls_token,
cls_token_segment_id=2 if xlnet else 0,
sep_token=sep_token,
sep_token_extra=roberta,
# roberta uses an extra separator b/w pairs of sentences, cf. github.com/pytorch/fairseq/commit/1684e166e3da03f5b600dbb7855cb98ddfcd0805
pad_on_left=xlnet,
# pad on the left for xlnet
pad_token_id=pad_token_id,
pad_token_segment_id=4 if xlnet else 0,
pad_token_label_id=pad_label_idx,
do_padding=False)
num_masks = sum(prefix_mask)
# assert len(sent) == num_masks # each token has a True subtoken
if num_masks < len(sent): # long sent gets truncated, +1 for root
batch_forms[-1] = batch_forms[-1][:num_masks + 1] # form
raw_batch[-1][sent_idx] = raw_batch[-1][sent_idx][:num_masks + 1] # head
raw_batch[-2][sent_idx] = raw_batch[-2][sent_idx][:num_masks + 1] # rel
raw_batch[-3][sent_idx] = raw_batch[-3][sent_idx][:num_masks + 1] # pos
prefix_mask[0] = True # <root> is now [CLS]
prefix_offset = [idx for idx, m in enumerate(prefix_mask) if m]
batch_input_ids.append(input_ids)
batch_input_mask.append(input_mask)
batch_prefix_offset.append(prefix_offset)
if mask_p:
if shuffle:
size = int(np.ceil(mask_p * len(prefix_offset[1:]))) # never mask [CLS]
mask_offsets = np.random.choice(np.arange(1, len(prefix_offset)), size, replace=False)
for offset in sorted(mask_offsets):
assert 0 < offset < len(input_ids)
# mask_word = raw_batch[0][sent_idx][offset]
# mask_prefix = tokenizer.convert_ids_to_tokens([input_ids[prefix_offset[offset]]])[0]
# assert mask_word.startswith(mask_prefix) or mask_prefix.startswith(
# mask_word) or mask_prefix == "'", \
# f'word {mask_word} prefix {mask_prefix} not match' # could vs couldn
# mask_offsets.append(input_ids[offset]) # subword token
# mask_offsets.append(offset) # form token
input_ids[prefix_offset[offset]] = mask_token_id # mask prefix
# whole word masking, mask the rest of the word
for i in range(prefix_offset[offset] + 1, len(input_ids) - 1):
if prefix_mask[i]:
break
input_ids[i] = mask_token_id
batch_masked_offsets.append(sorted(mask_offsets))
else:
batch_masked_offsets.append([0]) # No masking in prediction
batch_forms = tf.keras.preprocessing.sequence.pad_sequences(batch_forms, padding='post',
value=self.form_vocab.safe_pad_token_idx,
dtype='int64')
batch_input_ids = tf.keras.preprocessing.sequence.pad_sequences(batch_input_ids, padding='post',
value=pad_token_id,
dtype='int64')
batch_input_mask = tf.keras.preprocessing.sequence.pad_sequences(batch_input_mask, padding='post',
value=0,
dtype='int64')
batch_prefix_offset = tf.keras.preprocessing.sequence.pad_sequences(batch_prefix_offset, padding='post',
value=0,
dtype='int64')
batch_heads = tf.keras.preprocessing.sequence.pad_sequences(raw_batch[-2], padding='post',
value=0,
dtype='int64')
batch_rels = tf.keras.preprocessing.sequence.pad_sequences(raw_batch[-1], padding='post',
value=self.rel_vocab.safe_pad_token_idx,
dtype='int64')
if mask_p:
batch_masked_offsets = tf.keras.preprocessing.sequence.pad_sequences(batch_masked_offsets, padding='post',
value=pad_token_id,
dtype='int64')
feats = (tf.constant(batch_input_ids, dtype='int64'), tf.constant(batch_input_mask, dtype='int64'),
tf.constant(batch_prefix_offset))
if use_pos:
batch_pos = tf.keras.preprocessing.sequence.pad_sequences(raw_batch[1], padding='post',
value=self.cpos_vocab.safe_pad_token_idx,
dtype='int64')
feats += (batch_pos,)
yield (batch_forms, feats), \
(batch_heads, batch_rels, batch_masked_offsets) if mask_p else (batch_heads, batch_rels)
def len_of_sent(self, sent):
# Transformer tokenizing
config = self.transformer_config
tokenizer = self.tokenizer
xlnet = config_is(config, 'xlnet')
roberta = config_is(config, 'roberta')
pad_token = tokenizer.pad_token
pad_token_id = tokenizer.convert_tokens_to_ids([pad_token])[0]
cls_token = tokenizer.cls_token
sep_token = tokenizer.sep_token
max_seq_length = self.config.max_seq_length
sent = sent[1:] # remove <root> use [CLS] instead
pad_label_idx = self.form_vocab.pad_idx
sent = [x[0] for x in sent]
sent = adjust_tokens_for_transformers(sent)
input_ids, input_mask, segment_ids, prefix_mask = \
convert_examples_to_features(sent,
max_seq_length,
tokenizer,
cls_token_at_end=xlnet,
# xlnet has a cls token at the end
cls_token=cls_token,
cls_token_segment_id=2 if xlnet else 0,
sep_token=sep_token,
sep_token_extra=roberta,
# roberta uses an extra separator b/w pairs of sentences, cf. github.com/pytorch/fairseq/commit/1684e166e3da03f5b600dbb7855cb98ddfcd0805
pad_on_left=xlnet,
# pad on the left for xlnet
pad_token_id=pad_token_id,
pad_token_segment_id=4 if xlnet else 0,
pad_token_label_id=pad_label_idx,
do_padding=False)
return len(input_ids)
def samples_to_dataset(self, samples: Generator, map_x=None, map_y=None, batch_size=5000, shuffle=None, repeat=None,
drop_remainder=False, prefetch=1, cache=True) -> tf.data.Dataset:
if shuffle:
return CoNLL_DEP_Transform.samples_to_dataset(self, samples, map_x, map_y, batch_size, shuffle, repeat,
drop_remainder, prefetch, cache)
def generator():
# custom bucketing, load corpus into memory
corpus = list(x for x in (samples() if callable(samples) else samples))
n_tokens = 0
batch = []
for idx, sent in enumerate(corpus):
sent_len = self.len_of_sent(sent)
if n_tokens + sent_len > batch_size and batch:
yield from self.batched_inputs_to_batches(corpus, batch, shuffle)
n_tokens = 0
batch = []
n_tokens += sent_len
batch.append(idx)
if batch:
yield from self.batched_inputs_to_batches(corpus, batch, shuffle)
# debug for transformer
# next(generator())
return Transform.samples_to_dataset(self, generator, False, False, 0, False, repeat, drop_remainder, prefetch,
cache)
def Y_to_outputs(self, Y: Union[tf.Tensor, Tuple[tf.Tensor]], gold=False, inputs=None, X=None) -> Iterable:
if self.graph:
ys = CoNLL_SDP_Transform.Y_to_outputs(self, Y, gold, inputs, X)
ys = [[([t[0] for t in l], [t[1] for t in l]) for l in y] for y in ys]
return ys
return super().Y_to_outputs(Y, gold, inputs, X)
class CoNLL_SDP_Transform(CoNLLTransform):
def __init__(self, config: SerializableDict = None, map_x=True, map_y=True, lower=True, n_buckets=32, min_freq=2,
use_pos=True, **kwargs) -> None:
super().__init__(config, map_x, map_y, lower, n_buckets, min_freq, use_pos, **kwargs)
self.orphan_relation = ROOT
def lock_vocabs(self):
super().lock_vocabs()
# heuristic to find the orphan relation
self._find_orphan_relation()
def _find_orphan_relation(self):
for rel in self.rel_vocab.idx_to_token:
if 'root' in rel.lower():
self.orphan_relation = rel
break
def file_to_inputs(self, filepath: str, gold=True):
assert gold, 'only support gold file for now'
use_pos = self.use_pos
conllu = filepath.endswith('.conllu')
enhanced_only = self.config.get('enhanced_only', None)
for i, sent in enumerate(read_conll(filepath)):
parsed_sent = []
if conllu:
for cell in sent:
ID = cell[0]
form = cell[1]
cpos = cell[3]
head = cell[6]
deprel = cell[7]
deps = cell[8]
deps = [x.split(':', 1) for x in deps.split('|')]
heads = [int(x[0]) for x in deps if x[0].isdigit()]
rels = [x[1] for x in deps if x[0].isdigit()]
if enhanced_only:
if head in heads:
offset = heads.index(head)
heads.pop(offset)
rels.pop(offset)
else:
if head not in heads:
heads.append(head)
rels.append(deprel)
parsed_sent.append([form, cpos, heads, rels] if use_pos else [form, heads, rels])
else:
prev_cells = None
heads = []
rels = []
for j, cell in enumerate(sent):
ID = cell[0]
form = cell[1]
cpos = cell[3]
head = cell[6]
deprel = cell[7]
if prev_cells and ID != prev_cells[0]: # found end of token
parsed_sent.append(
[prev_cells[1], prev_cells[2], heads, rels] if use_pos else [prev_cells[1], heads, rels])
heads = []
rels = []
heads.append(head)
rels.append(deprel)
prev_cells = [ID, form, cpos, head, deprel] if use_pos else [ID, form, head, deprel]
parsed_sent.append(
[prev_cells[1], prev_cells[2], heads, rels] if use_pos else [prev_cells[1], heads, rels])
yield parsed_sent
def fit(self, trn_path: str, **kwargs) -> int:
self.form_vocab = VocabTF()
self.form_vocab.add(ROOT) # make root the 2ed elements while 0th is pad, 1st is unk
if self.use_pos:
self.cpos_vocab = VocabTF(pad_token=None, unk_token=None)
self.rel_vocab = VocabTF(pad_token=None, unk_token=None)
num_samples = 0
counter = Counter()
for sent in self.file_to_samples(trn_path, gold=True):
num_samples += 1
for idx, cell in enumerate(sent):
if len(cell) == 4:
form, cpos, head, deprel = cell
elif len(cell) == 3:
if self.use_pos:
form, cpos = cell[0]
else:
form = cell[0]
head, deprel = cell[1:]
else:
raise ValueError('Unknown data arrangement')
if idx == 0:
root = form
else:
counter[form] += 1
if self.use_pos:
self.cpos_vocab.add(cpos)
self.rel_vocab.update(deprel)
for token in [token for token, freq in counter.items() if freq >= self.config.min_freq]:
self.form_vocab.add(token)
return num_samples
def inputs_to_samples(self, inputs, gold=False):
use_pos = self.use_pos
for sent in inputs:
sample = []
for i, cell in enumerate(sent):
if isinstance(cell, tuple):
cell = list(cell)
elif isinstance(cell, str):
cell = [cell]
if self.config['lower']:
cell[0] = cell[0].lower()
if not gold:
cell += [[0], [self.rel_vocab.safe_pad_token]]
sample.append(cell)
# insert root word with arbitrary fields, anyway it will be masked
if use_pos:
form, cpos, head, deprel = sample[0]
sample.insert(0, [self.bos, self.bos, [0], deprel])
else:
form, head, deprel = sample[0]
sample.insert(0, [self.bos, [0], deprel])
yield sample
def batched_inputs_to_batches(self, corpus, indices, shuffle):
use_pos = self.use_pos
raw_batch = [[], [], [], []] if use_pos else [[], [], []]
max_len = len(max([corpus[i] for i in indices], key=len))
for idx in indices:
arc = np.zeros((max_len, max_len), dtype=np.bool)
rel = np.zeros((max_len, max_len), dtype=np.int64)
for b in raw_batch[:2]:
b.append([])
for m, cells in enumerate(corpus[idx]):
if use_pos:
for b, c, v in zip(raw_batch, cells,
[self.form_vocab, self.cpos_vocab]):
b[-1].append(v.get_idx_without_add(c))
else:
for b, c, v in zip(raw_batch, cells,
[self.form_vocab]):
b[-1].append(v.get_idx_without_add(c))
for n, r in zip(cells[-2], cells[-1]):
arc[m, n] = True
rid = self.rel_vocab.get_idx_without_add(r)
if rid is None:
logger.warning(f'Relation OOV: {r} not exists in train')
continue
rel[m, n] = rid
raw_batch[-2].append(arc)
raw_batch[-1].append(rel)
batch = []
for b, v in zip(raw_batch, [self.form_vocab, self.cpos_vocab]):
b = tf.keras.preprocessing.sequence.pad_sequences(b, padding='post',
value=v.safe_pad_token_idx,
dtype='int64')
batch.append(b)
batch += raw_batch[2:]
assert len(batch) == 4
yield (batch[0], batch[1]), (batch[2], batch[3])
def create_types_shapes_values(self) -> Tuple[Tuple, Tuple, Tuple]:
types = (tf.int64, tf.int64), (tf.bool, tf.int64)
shapes = ([None, None], [None, None]), ([None, None, None], [None, None, None])
values = (self.form_vocab.safe_pad_token_idx, self.cpos_vocab.safe_pad_token_idx), (
False, self.rel_vocab.safe_pad_token_idx)
return types, shapes, values
def Y_to_outputs(self, Y: Union[tf.Tensor, Tuple[tf.Tensor]], gold=False, inputs=None, X=None) -> Iterable:
arc_preds, rel_preds, mask = Y
sents = []
for arc_sent, rel_sent, length in zip(arc_preds, rel_preds,
tf.math.count_nonzero(mask, axis=-1)):
sent = []
for arc, rel in zip(tolist(arc_sent[1:, 1:]), tolist(rel_sent[1:, 1:])):
ar = []
for idx, (a, r) in enumerate(zip(arc, rel)):
if a:
ar.append((idx + 1, self.rel_vocab.idx_to_token[r]))
if not ar:
# orphan
ar.append((0, self.orphan_relation))
sent.append(ar)
sents.append(sent)
return sents
def XY_to_inputs_outputs(self, X: Union[tf.Tensor, Tuple[tf.Tensor]], Y: Union[tf.Tensor, Tuple[tf.Tensor]],
gold=False, inputs=None, conll=True) -> Iterable:
(words, feats, mask), (arc_preds, rel_preds) = X, Y
xs = inputs
ys = self.Y_to_outputs((arc_preds, rel_preds, mask))
sents = []
for x, y in zip(xs, ys):
sent = CoNLLSentence()
for idx, ((form, cpos), pred) in enumerate(zip(x, y)):
head = [p[0] for p in pred]
deprel = [p[1] for p in pred]
if conll:
sent.append(CoNLLWord(id=idx + 1, form=form, cpos=cpos, head=head, deprel=deprel))
else:
sent.append([head, deprel])
sents.append(sent)
return sents
class CoNLL_DEP_Transform(CoNLLTransform):
def __init__(self, config: SerializableDict = None, map_x=True, map_y=True, lower=True, n_buckets=32,
min_freq=2, **kwargs) -> None:
super().__init__(config, map_x, map_y, lower, n_buckets, min_freq, **kwargs)
def batched_inputs_to_batches(self, corpus, indices, shuffle):
"""Convert batched inputs to batches of samples
Args:
corpus(list): A list of inputs
indices(list): A list of indices, each list belongs to a batch
shuffle:
Returns:
"""
raw_batch = [[], [], [], []]
for idx in indices:
for b in raw_batch:
b.append([])
for cells in corpus[idx]:
for b, c, v in zip(raw_batch, cells,
[self.form_vocab, self.cpos_vocab, None, self.rel_vocab]):
b[-1].append(v.get_idx_without_add(c) if v else c)
batch = []
for b, v in zip(raw_batch, [self.form_vocab, self.cpos_vocab, None, self.rel_vocab]):
b = tf.keras.preprocessing.sequence.pad_sequences(b, padding='post',
value=v.safe_pad_token_idx if v else 0,
dtype='int64')
batch.append(b)
assert len(batch) == 4
yield (batch[0], batch[1]), (batch[2], batch[3])
def create_types_shapes_values(self) -> Tuple[Tuple, Tuple, Tuple]:
types = (tf.int64, tf.int64), (tf.int64, tf.int64)
shapes = ([None, None], [None, None]), ([None, None], [None, None])
values = (self.form_vocab.safe_pad_token_idx, self.cpos_vocab.safe_pad_token_idx), (
0, self.rel_vocab.safe_pad_token_idx)
return types, shapes, values
def inputs_to_samples(self, inputs, gold=False):
token_mapping: dict = self.config.get('token_mapping', None)
use_pos = self.config.get('use_pos', True)
for sent in inputs:
sample = []
for i, cell in enumerate(sent):
if isinstance(cell, tuple):
cell = list(cell)
elif isinstance(cell, str):
cell = [cell]
if token_mapping:
cell[0] = token_mapping.get(cell[0], cell[0])
if self.config['lower']:
cell[0] = cell[0].lower()
if not gold:
cell += [0, self.rel_vocab.safe_pad_token]
sample.append(cell)
# insert root word with arbitrary fields, anyway it will be masked
# form, cpos, head, deprel = sample[0]
sample.insert(0, [self.bos, self.bos, 0, self.bos] if use_pos else [self.bos, 0, self.bos])
yield sample
def XY_to_inputs_outputs(self, X: Union[tf.Tensor, Tuple[tf.Tensor]], Y: Union[tf.Tensor, Tuple[tf.Tensor]],
gold=False, inputs=None, conll=True, arc_scores=None, rel_scores=None) -> Iterable:
(words, feats, mask), (arc_preds, rel_preds) = X, Y
if inputs is None:
inputs = self.X_to_inputs(X)
ys = self.Y_to_outputs((arc_preds, rel_preds, mask), inputs=inputs)
sents = []
for x, y in zip(inputs, ys):
sent = CoNLLSentence()
for idx, (cell, (head, deprel)) in enumerate(zip(x, y)):
if self.use_pos and not self.config.get('joint_pos', None):
form, cpos = cell
else:
form, cpos = cell, None
if conll:
sent.append(
CoNLLWord(id=idx + 1, form=form, cpos=cpos, head=head, deprel=deprel) if conll == '.conll'
else CoNLLUWord(id=idx + 1, form=form, upos=cpos, head=head, deprel=deprel))
else:
sent.append([head, deprel])
sents.append(sent)
return sents
def fit(self, trn_path: str, **kwargs) -> int:
use_pos = self.config.use_pos
self.form_vocab = VocabTF()
self.form_vocab.add(ROOT) # make root the 2ed elements while 0th is pad, 1st is unk
if self.use_pos:
self.cpos_vocab = VocabTF(pad_token=None, unk_token=None)
self.rel_vocab = VocabTF(pad_token=None, unk_token=None)
num_samples = 0
counter = Counter()
for sent in self.file_to_samples(trn_path, gold=True):
num_samples += 1
for idx, cell in enumerate(sent):
if use_pos:
form, cpos, head, deprel = cell
else:
form, head, deprel = cell
if idx == 0:
root = form
else:
counter[form] += 1
if use_pos:
self.cpos_vocab.add(cpos)
self.rel_vocab.add(deprel)
for token in [token for token, freq in counter.items() if freq >= self.config.min_freq]:
self.form_vocab.add(token)
return num_samples
@property
def root_rel_idx(self):
root_rel_idx = self.config.get('root_rel_idx', None)
if root_rel_idx is None:
for idx, rel in enumerate(self.rel_vocab.idx_to_token):
if 'root' in rel.lower() and rel != self.bos:
self.config['root_rel_idx'] = root_rel_idx = idx
break
return root_rel_idx
def Y_to_outputs(self, Y: Union[tf.Tensor, Tuple[tf.Tensor]], gold=False, inputs=None, X=None) -> Iterable:
arc_preds, rel_preds, mask = Y
sents = []
for arc_sent, rel_sent, length in zip(arc_preds, rel_preds,
tf.math.count_nonzero(mask, axis=-1)):
arcs = tolist(arc_sent)[1:length + 1]
rels = tolist(rel_sent)[1:length + 1]
sents.append([(a, self.rel_vocab.idx_to_token[r]) for a, r in zip(arcs, rels)])
return sents