def test_args_from_line():
line = 'LAmerge -v preads.1 preads.1.preads.1.C0.S preads.1.preads.1.N0.S'
expected = ['preads.1', 'preads.1.preads.1.C0.S', 'preads.1.preads.1.N0.S']
result = list(f.yield_args_from_line(line))
helpers.equal_list(result, expected)
bash_lines = [line]
las_files = [word + '.las' for word in f.yield_args_from_line(
line) for line in bash_lines if line.startswith('LAmerge')][1:]
def test_args_from_line():
line = 'LAmerge -v preads.1 preads.1.preads.1.C0.S preads.1.preads.1.N0.S'
expected = ['preads.1', 'preads.1.preads.1.C0.S', 'preads.1.preads.1.N0.S']
result = list(f.yield_args_from_line(line))
helpers.equal_list(result, expected)
bash_lines = [line]
las_files = [
word + '.las' for word in f.yield_args_from_line(line)
for line in bash_lines if line.startswith('LAmerge')
][1:]
def test_parsed_readlengths_from_dbdump_output():
lengths = list(
f.parsed_readlengths_from_dbdump_output(sample_DBdump_output))
helpers.equal_list(lengths, [2000, 2000, 2500])
def test_parsed_readlengths_from_dbdump_output():
lengths = list(f.parsed_readlengths_from_dbdump_output(
sample_DBdump_output))
helpers.equal_list(lengths, [2000, 2000, 2500])
def test_parse_readlengths_from_dbdump():
#result = list(M.parse_readlengths_from_dbdump(StringIO(sample_DBdump)))
result = list(M.parse_readlengths_from_dbdump_output(sample_DBdump))
expected = [1998, 2001]
helpers.equal_list(result, expected)