def test_build_blast_db(self):
me = Database()
me.output = self.tmpdir
me.makeblastdb = 'makeblastdb'
copy(join(self.datadir, 'DnaK', 'linear.faa'),
join(self.tmpdir, 'db.faa'))
copy(join(self.datadir, 'DnaK', 'prot2tid.txt'),
join(self.tmpdir, 'taxon.map'))
me.build_blast_db()
self.assertTrue(isdir(join(self.tmpdir, 'blast')))
for ext in ('phr', 'pin', 'pog', 'psd', 'psi', 'psq'):
self.assertTrue(isfile(join(self.tmpdir, 'blast', f'db.{ext}')))
rmtree(join(self.tmpdir, 'blast'))
remove(join(self.tmpdir, 'db.faa'))
remove(join(self.tmpdir, 'taxon.map'))
def test_build_blast_db(self):
me = Database()
me.output = self.tmpdir
me.makeblastdb = 'makeblastdb'
me.tmpdir = self.tmpdir
copy(join(self.datadir, 'DnaK', 'linear.faa'),
join(self.tmpdir, 'db.faa'))
with open(join(self.datadir, 'DnaK', 'prot2tid.txt'), 'r') as f:
me.taxonmap = dict(x.split('\t') for x in f.read().splitlines())
me.build_blast_db()
self.assertTrue(isdir(join(self.tmpdir, 'blast')))
for ext in ('phr', 'pin', 'pog', 'psd', 'psi', 'psq'):
self.assertTrue(isfile(join(self.tmpdir, 'blast', f'db.{ext}')))
rmtree(join(self.tmpdir, 'blast'))
remove(join(self.tmpdir, 'db.faa'))