def log(self):
"""Get the flattened dictionary for consumption by GSD object."""
log = dict()
for key, value in dict_flatten(self.logger.log()).items():
log_value, type_flag = value
type_flag = TypeFlags[type_flag]
# This has to be checked first since type_shapes has a flag
# TypeFlags.object.
if key[-1] in self._special_keys:
self._log_special(log, key[-1], log_value)
# Now we can skip any flags we don't process, in this case
# TypeFlags.object.
if type_flag not in self._skip_flags:
if log_value is None:
continue
else:
# This places logged quantities that are
# per-{particle,bond,...} into the correct GSD namespace
# log/particles/{remaining namespace}. This preserves OVITO
# intergration.
if type_flag in self._per_flags:
log['/'.join((self._global_prepend,
type_flag.name + 's') + key)] = log_value
elif type_flag in self._convert_flags:
self._log_convert_value(
log, '/'.join((self._global_prepend,) + key),
type_flag, log_value)
else:
log['/'.join((self._global_prepend,) + key)] = \
log_value
else:
pass
return log
def log(self):
"""Get the flattened dictionary for consumption by GSD object."""
log = dict()
for key, value in dict_flatten(self.logger.log()).items():
if 'state' in key and _iterable_is_incomplete(value[0]):
pass
log_value, type_category = value
type_category = LoggerCategories[type_category]
# This has to be checked first since type_shapes has a category
# LoggerCategories.object.
if key[-1] in self._special_keys:
self._log_special(log, key[-1], log_value)
# Now we can skip any categories we don't process, in this case
# LoggerCategories.object.
if type_category not in self._skip_categories:
if log_value is None:
continue
else:
# This places logged quantities that are
# per-{particle,bond,...} into the correct GSD namespace
# log/particles/{remaining namespace}. This preserves OVITO
# intergration.
if type_category in self._per_categories:
log['/'.join((self._global_prepend, type_category.name
+ 's') + key)] = log_value
elif type_category in self._convert_categories:
self._log_convert_value(
log, '/'.join((self._global_prepend,) + key),
type_category, log_value)
else:
log['/'.join((self._global_prepend,) + key)] = \
log_value
else:
pass
return log
def _get_log_dict(self):
"""Get a flattened dict for writing to output."""
return {
key: value[0]
for key, value in dict_flatten(self.logger.log()).items()
}