def testUpgmaFitch(self):
fitchTree = hw.upgma(hw.fitchList, hw.fitchMatrix)
testFitchTree = (17.6, ('moth', (), ()),
(14.5, ('tuna', (), ()),
(9.0, (0.5, ('man', (), ()), ('monkey', (), ())),
(4.0, ('turtle', (), ()), ('chicken', (), ())))))
self.assertTrue(isomorphic(fitchTree, testFitchTree),
"Incorrect fitch tree")
def testUpgmaCarnivores(self):
carnivoresTree = hw.upgma(hw.carnivoresList, hw.carnivoresMatrix)
testCarnivoresTree = (45.375, ('cat', (), ()),
(21.666666666666664, ('dog', (), ()),
(18.25, ('seal', (), ()),
(13.0, ('bear', (), ()), ('raccoon', (),
())))))
self.assertTrue(isomorphic(carnivoresTree, testCarnivoresTree),
"Incorrect carnivores tree")
def testUpgmaHumans(self):
humansTree = hw.upgma(hw.humansList, hw.humansMatrix)
testHumansTree = (0.0026804, ('San', (), ()),
(0.0023785, ('Kikuyu', (), ()),
(0.0010831666666666665, ('Yoruba', (), ()),
(0.0009215, ('Han', (), ()),
(0.000656, ('Finnish', (), ()), ('Papuan', (),
()))))))
self.assertTrue(isomorphic(humansTree, testHumansTree),
"Incorrect humans tree")
def testUpgmaNeand(self):
neandTree = hw.upgma(hw.neandList, hw.neandMatrix)
testNeandTree = (0.0447688, ('Chimpanzee', (), ()),
(0.00571225, ('Neanderthal', (), ()),
(0.0026615, ('San', (), ()),
(0.00110925, ('Yoruba', (), ()),
(0.000656, ('Finnish', (), ()), ('Kostenki', (),
()))))))
self.assertTrue(isomorphic(neandTree, testNeandTree),
"Incorrect neand tree")
def testUpgmaGroodies(self):
groodiesTree = hw.upgma(hw.groodiesList, hw.groodiesMatrix)
testGroodiesTree = (6.0, ('Snoody', (), ()), (3.5, ('Groody', (), ()),
('Froody', (), ())))
self.assertTrue(isomorphic(groodiesTree, testGroodiesTree),
"Incorrect groodies tree")