def medical_annotators(text):
api_key_annotator = '{api-key}'
url_annotator = 'url-annotator'
service = acd.AnnotatorForClinicalDataV1(
authenticator=IAMAuthenticator(apikey=api_key_annotator),
version='2020-06-03')
service.set_service_url(url_annotator)
flowId = "wh_acd.ibm_clinical_insights_v1.0_standard_flow"
try:
output_dict = {}
response = service.analyze_with_flow(flowId, text)
concepts = response.concepts
for concept in concepts:
print("Type: ", concept.type, "- Name: ", concept.preferred_name)
output_dict[concept.type] = concept.preferred_name
return output_dict
except acd.ACDException as ex:
print("Error Occurred: Code ", ex.code, " Message ", ex.message,
" CorrelationId ", ex.correlation_id)
# See the License for the specific language governing permissions and
# limitations under the License.
import configparser
from ibm_cloud_sdk_core.authenticators.iam_authenticator import IAMAuthenticator
import ibm_whcs_sdk.annotator_for_clinical_data as wh
CONFIG = configparser.RawConfigParser()
CONFIG.read('./ibm_whcs_sdk/annotator_for_clinical_data/tests/config.ini')
BASE_URL = CONFIG.get('settings', 'base_url')
APIKEY = CONFIG.get('settings', 'key')
IAMURL = CONFIG.get('settings', 'iam_url')
VERSION = CONFIG.get('settings', 'version')
LEVEL = CONFIG.get('settings', 'logging_level')
DISABLE_SSL = CONFIG.get('settings', 'disable_ssl')
PROFILE = CONFIG.get('settings', 'profile')
ACD = wh.AnnotatorForClinicalDataV1(authenticator=IAMAuthenticator(
apikey=APIKEY, url=IAMURL, disable_ssl_verification=DISABLE_SSL),
version=VERSION)
ACD.set_service_url(BASE_URL)
ACD.set_disable_ssl_verification(DISABLE_SSL)
def test_delete_user_specific_artifacts():
try:
ACD.delete_user_specific_artifacts()
except wh.ACDException as acde:
assert acde.code == 400 or acde.code == 405