def __init__(self, p):
self.cellCounter = 1
self.olay = Overlay()
self.position = p
print p.getRoiPath()
if p.getRoiPath() != None: # check if there is an existing overlay file and load it!
p.loadRois()
self.frame = JFrame("CellCropper", size=(200,200))
self.frame.setLocation(20,120)
self.Panel = JPanel(GridLayout(0,1))
self.frame.add(self.Panel)
#self.nameField = JTextField("p" + "_c",15)
self.nameField = JTextField("p" + str(self.position.getID()) + "_c",15)
self.Panel.add(self.nameField)
self.cutoutButton = JButton("Cut out cell",actionPerformed=cut)
self.Panel.add(self.cutoutButton)
self.delOlButton = JButton("Delete Overlay",actionPerformed=delOverlay)
self.Panel.add(self.delOlButton)
self.saveOlButton = JButton("Save Overlay",actionPerformed=saveOverlay)
self.Panel.add(self.saveOlButton)
self.quitButton = JButton("Quit script",actionPerformed=quit)
self.Panel.add(self.quitButton)
self.frame.pack()
WindowManager.addWindow(self.frame)
self.show()
def __init__(self):
'''
Create and display the connection window.
'''
super(ConnectionWindow, self).__init__("BIAFlows Connection")
self.biaflows = BIAFlows.getInstance()
self.createAndShowGUI()
self.addWindowListener(self)
WindowManager.addWindow(self)
def __init__(self):
self.mainDir = ""
self.frame = JFrame("Dots Quality Check", size=(250,300))
self.frame.setLocation(20,120)
self.Panel = JPanel(GridLayout(0,1))
self.frame.add(self.Panel)
self.openNextButton = JButton('Open Next Random',actionPerformed=openRandom)
self.Panel.add(self.openNextButton)
self.saveButton = JButton('Save',actionPerformed=save)
self.saveButton.setEnabled(False)
self.Panel.add(self.saveButton)
self.cropButton = JButton('Crop values from here', actionPerformed=cropVals)
self.Panel.add(self.cropButton)
self.DiscardButton = JButton('Discard cell', actionPerformed=discardCell)
self.DiscardButton.setEnabled(True)
self.Panel.add(self.DiscardButton)
self.quitButton = JButton('Quit script',actionPerformed=quit)
self.Panel.add(self.quitButton)
annoPanel = JPanel()
#add gridlayout
wtRButton = JRadioButton("wt", actionCommand="wt")
defectRButton = JRadioButton("Defect", actionCommand="defect")
annoPanel.add(wtRButton)
annoPanel.add(defectRButton)
self.aButtonGroup = ButtonGroup()
self.aButtonGroup.add(wtRButton)
self.aButtonGroup.add(defectRButton)
self.Panel.add(annoPanel)
self.ProgBar = JProgressBar()
self.ProgBar.setStringPainted(True)
self.ProgBar.setValue(0)
self.Panel.add(self.ProgBar)
self.pathLabel = JLabel("-- No main directory chosen --")
self.pathLabel.setHorizontalAlignment( SwingConstants.CENTER )
self.Panel.add(self.pathLabel)
WindowManager.addWindow(self.frame)
self.show()
def __init__(self):
'''
Create and display the upload window.
'''
super(UploadWindow, self).__init__("BIAFlows Image Upload")
self.biaflows = ConnectionWindow.getInstance().getBiaflows()
self.nrOfImagesToUpload = 0
projects = Projects()
self.projectNames = projects.getNames()
self.projectIDs = projects.getIDs()
storages = Storages()
self.storageNames = storages.getNames()
self.storageIDs = storages.getIDs()
self.createAndShowGUI()
self.addWindowListener(self)
WindowManager.addWindow(self)
def __init__(self):
self.mainDir = ""
self.setTitle("Dots Quality Check")
self.setSize(250, 300)
self.setLocation(20,120)
self.addWindowFocusListener(self)
self.Panel = JPanel(GridLayout(0,1))
self.add(self.Panel)
self.openNextButton = JButton("Open Next Random", actionPerformed=self.openRandom)
self.Panel.add(self.openNextButton)
self.saveButton = JButton("Save", actionPerformed=self.save, enabled=False)
self.Panel.add(self.saveButton)
self.cropButton = JButton("Crop values from here", actionPerformed=self.cropVals)
self.Panel.add(self.cropButton)
self.DiscardButton = JButton("Discard cell", actionPerformed=self.discardCell)
self.Panel.add(self.DiscardButton)
self.quitButton = JButton("Quit script",actionPerformed=self.quit)
self.Panel.add(self.quitButton)
annoPanel = JPanel()
#add gridlayout
self.wtRButton = JRadioButton("wt", actionCommand="wt")
self.wtRButton.addActionListener(self)
self.defectRButton = JRadioButton("Defect", actionCommand="defect")
self.defectRButton.addActionListener(self)
annoPanel.add(self.wtRButton)
annoPanel.add(self.defectRButton)
self.aButtonGroup = ButtonGroup()
self.aButtonGroup.add(self.wtRButton)
self.aButtonGroup.add(self.defectRButton)
self.Panel.add(annoPanel)
self.ProgBar = JProgressBar()
self.ProgBar.setStringPainted(True)
self.ProgBar.setValue(0)
self.Panel.add(self.ProgBar)
self.pathLabel = JLabel("-- No main directory chosen --")
self.pathLabel.setHorizontalAlignment( SwingConstants.CENTER )
self.Panel.add(self.pathLabel)
WindowManager.addWindow(self)
self.show()
def __init__(self):
self.frame = JFrame("CellCropper: Experiment details", size=(400,200))
self.frame.setLocation(20,120)
self.Panel = JPanel(GridLayout(4,2))
self.frame.add(self.Panel)
self.Panel.add(JLabel("Date:"))
self.dateField = JTextField( str(date.today()), 8 )
self.Panel.add(self.dateField)
self.strainField = JTextField( "2926",4 )
self.Panel.add(self.strainField)
self.tempField = JTextField( "34",2 )
self.Panel.add(self.tempField)
self.ODField = JTextField( "0.5",3 )
self.Panel.add(self.ODField)
self.condField = JTextField( "0.5",3 )
self.Panel.add(self.condField)
self.OKButton = JButton("OK",actionPerformed=closeAndMakePos)
self.Panel.add(self.OKButton)
self.frame.pack()
WindowManager.addWindow(self.frame)
self.show()
