def loadOther_pushButton_slot(self,fnameToLoad=False):
"""
Load a user-selected atlas file but use the labels from the ARA in the drop-down box.
Can optionally load a specific file name (used for de-bugging)
"""
if fnameToLoad==False:
fileFilter="Images (*.mhd *.mha *.tiff *.tif *.nrrd)"
fnameToLoad = QtGui.QFileDialog.getOpenFileName(self, 'Open file', lasHelp.readPreference('lastLoadDir'), fileFilter)
fnameToLoad = str(fnameToLoad)
#re-load labels
selectedName = str(self.araName_comboBox.itemText(self.araName_comboBox.currentIndex()))
paths = self.paths[selectedName]
self.data['labels'] = self.loadLabels(paths['labels'])
#load the selected atlas (without displaying it)
self.data['atlas'] = imageStackLoader.loadStack(fnameToLoad)
self.data['currentlyLoadedAtlasName'] = fnameToLoad.split(os.path.sep)[-1]
def loadOrig_pushButton_slot(self):
"""
Loads the atlas file but does not display it. Coordinate loading of the ARA items defined in the dictionary paths.
araName is a value from the self.paths dictionary. The values will be
combobox item texts and will load a dictionary from self.paths. The keys
of this dictionary have these keys:
'atlas' (full path to atlas volume file)
'labels' (full path to atlas labels file - csv or json)
"""
selectedName = str(self.araName_comboBox.itemText(self.araName_comboBox.currentIndex()))
paths = self.paths[selectedName]
#Load the labels (this associates brain area index values with brain area names)
self.data['labels'] = self.loadLabels(paths['labels'])
#Load the raw image data but do not display it.
self.data['atlas'] = imageStackLoader.loadStack(paths['atlas'])
self.data['currentlyLoadedAtlasName'] = paths['atlas'].split(os.path.sep)[-1]
def loadOrig_pushButton_slot(self):
"""
Loads the atlas file but does not display it. Coordinate loading of the ARA items defined in the dictionary paths.
araName is a value from the self.paths dictionary. The values will be
combobox item texts and will load a dictionary from self.paths. The keys
of this dictionary have these keys:
'atlas' (full path to atlas volume file)
'labels' (full path to atlas labels file - csv or json)
"""
selectedName = str(
self.araName_comboBox.itemText(
self.araName_comboBox.currentIndex()))
paths = self.paths[selectedName]
#Load the labels (this associates brain area index values with brain area names)
self.data['labels'] = self.loadLabels(paths['labels'])
#Load the raw image data but do not display it.
self.data['atlas'] = imageStackLoader.loadStack(paths['atlas'])
self.data['currentlyLoadedAtlasName'] = paths['atlas'].split(
os.path.sep)[-1]
def loadOther_pushButton_slot(self, fnameToLoad=False):
"""
Load a user-selected atlas file but use the labels from the ARA in the drop-down box.
Can optionally load a specific file name (used for de-bugging)
"""
if fnameToLoad == False:
fileFilter = "Images (*.mhd *.mha *.tiff *.tif *.nrrd)"
fnameToLoad = QtGui.QFileDialog.getOpenFileName(
self, 'Open file', lasHelp.readPreference('lastLoadDir'),
fileFilter)
fnameToLoad = str(fnameToLoad)
#re-load labels
selectedName = str(
self.araName_comboBox.itemText(
self.araName_comboBox.currentIndex()))
paths = self.paths[selectedName]
self.data['labels'] = self.loadLabels(paths['labels'])
#load the selected atlas (without displaying it)
self.data['atlas'] = imageStackLoader.loadStack(fnameToLoad)
self.data['currentlyLoadedAtlasName'] = fnameToLoad.split(
os.path.sep)[-1]