def validate_inputs(self):
"""Validate inputs."""
validate_bam_file(self.bam, check_exist=True)
validate_bed_file(self.output)
validate_string(self.quant, choices=["cDNA", "reads"])
validate_integer(self.multimax)
validate_string(self.group_by, choices=["start", "middle", "end"])
def test_validate_bed_file(self):
message = "Bed file file.txt should have a valid bed extension."
with self.assertRaisesRegex(ValueError, message):
validate_bed_file("file.txt", check_exist=False)
message = "Bed file file.bed does not exist."
with self.assertRaisesRegex(ValueError, message):
validate_bed_file("file.bed", check_exist=True)
bed = self.make_bed(intervals=[["chr1", 10, 20, ".", 12, "+"]])
validate_bed_file(bed, check_exist=True)
def validate_inputs(self):
"""Validate inputs."""
validate_bed_file(self.sites, check_exist=True)
validate_bed_file(self.outfile)