def get_callbacks(CONF, use_lr_decay=True):
"""
Get a callback list to feed fit_generator.
#TODO Use_remote callback needs proper configuration
#TODO Add ReduceLROnPlateau callback?
Parameters
----------
CONF: dict
Returns
-------
List of callbacks
"""
calls = []
# Add mandatory callbacks
calls.append(callbacks.TerminateOnNaN())
calls.append(LRHistory())
# Add optional callbacks
if use_lr_decay:
milestones = np.array(CONF['training']['lr_step_schedule']) * CONF['training']['epochs']
milestones = milestones.astype(np.int)
calls.append(LR_scheduler(lr_decay=CONF['training']['lr_step_decay'],
epoch_milestones=milestones.tolist()))
if CONF['monitor']['use_tensorboard']:
calls.append(callbacks.TensorBoard(log_dir=paths.get_logs_dir(), write_graph=False))
# # Let the user launch Tensorboard
# print('Monitor your training in Tensorboard by executing the following comand on your console:')
# print(' tensorboard --logdir={}'.format(paths.get_logs_dir()))
# Run Tensorboard on a separate Thread/Process on behalf of the user
port = os.getenv('monitorPORT', 6006)
port = int(port) if len(str(port)) >= 4 else 6006
subprocess.run(['fuser', '-k', '{}/tcp'.format(port)]) # kill any previous process in that port
p = Process(target=launch_tensorboard, args=(port,), daemon=True)
p.start()
if CONF['monitor']['use_remote']:
calls.append(callbacks.RemoteMonitor())
if CONF['training']['use_validation'] and CONF['training']['use_early_stopping']:
calls.append(callbacks.EarlyStopping(patience=int(0.1 * CONF['training']['epochs'])))
if CONF['training']['ckpt_freq'] is not None:
calls.append(callbacks.ModelCheckpoint(
os.path.join(paths.get_checkpoints_dir(), 'epoch-{epoch:02d}.hdf5'),
verbose=1,
period=max(1, int(CONF['training']['ckpt_freq'] * CONF['training']['epochs']))))
if not calls:
calls = None
return calls
def save_default_imagenet_model():
"""
Create a model in models_dir with default ImageNet training
"""
CONF = config.get_conf_dict()
TIMESTAMP = 'default_imagenet'
# Clear default conf and create custom conf
for k, v in CONF.items():
if k in ['general', 'augmentation']:
continue
for i, j in v.items():
CONF[k][i] = None
CONF['augmentation']['train_mode'] = None
CONF['model']['modelname'] = 'Xception'
CONF['model']['image_size'] = 224
CONF['model']['preprocess_mode'] = model_modes[CONF['model']['modelname']]
CONF['model']['num_classes'] = 1000
CONF['dataset']['mean_RGB'] = [123.675, 116.28, 103.53]
CONF['dataset']['std_RGB'] = [58.395, 57.12, 57.375]
paths.timestamp = TIMESTAMP
paths.CONF = CONF
# Create classes.txt for ImageNet
fpath = keras.utils.get_file(
'imagenet_class_index.json',
'https://s3.amazonaws.com/deep-learning-models/image-models/imagenet_class_index.json',
cache_subdir='models',
file_hash='c2c37ea517e94d9795004a39431a14cb')
with open(fpath) as f:
classes = json.load(f)
classes = np.array(list(classes.values()))[:, 1]
# Create the model
architecture = getattr(applications, CONF['model']['modelname'])
img_width, img_height = CONF['model']['image_size'], CONF['model']['image_size']
model = architecture(weights='imagenet', include_top=True, input_shape=(img_width, img_height, 3))
model.compile(optimizer='adam', loss='categorical_crossentropy', metrics=['accuracy'])
# Save everything
utils.create_dir_tree()
np.savetxt(os.path.join(paths.get_ts_splits_dir(), 'classes.txt'), classes, fmt='%s', delimiter='/n')
save_conf(CONF)
model.save(fpath=os.path.join(paths.get_checkpoints_dir(), 'final_model.h5'),
include_optimizer=False)
def load_inference_model(timestamp=None, ckpt_name=None):
"""
Load a model for prediction.
Parameters
----------
* timestamp: str
Name of the timestamp to use. The default is the last timestamp in `./models`.
* ckpt_name: str
Name of the checkpoint to use. The default is the last checkpoint in `./models/[timestamp]/ckpts`.
"""
global loaded_ts, loaded_ckpt
global graph, model, conf, class_names, class_info
# Set the timestamp
timestamp_list = next(os.walk(paths.get_models_dir()))[1]
timestamp_list = sorted(timestamp_list)
if not timestamp_list:
raise Exception(
"You have no models in your `./models` folder to be used for inference. "
"Therefore the API can only be used for training.")
elif timestamp is None:
timestamp = timestamp_list[-1]
elif timestamp not in timestamp_list:
raise ValueError(
"Invalid timestamp name: {}. Available timestamp names are: {}".
format(timestamp, timestamp_list))
paths.timestamp = timestamp
print('Using TIMESTAMP={}'.format(timestamp))
# Set the checkpoint model to use to make the prediction
ckpt_list = os.listdir(paths.get_checkpoints_dir())
ckpt_list = sorted([name for name in ckpt_list if name.endswith('.h5')])
if not ckpt_list:
raise Exception(
"You have no checkpoints in your `./models/{}/ckpts` folder to be used for inference. "
.format(timestamp) +
"Therefore the API can only be used for training.")
elif ckpt_name is None:
ckpt_name = ckpt_list[-1]
elif ckpt_name not in ckpt_list:
raise ValueError(
"Invalid checkpoint name: {}. Available checkpoint names are: {}".
format(ckpt_name, ckpt_list))
print('Using CKPT_NAME={}'.format(ckpt_name))
# Clear the previous loaded model
K.clear_session()
# Load the class names and info
splits_dir = paths.get_ts_splits_dir()
class_names = load_class_names(splits_dir=splits_dir)
class_info = None
if 'info.txt' in os.listdir(splits_dir):
class_info = load_class_info(splits_dir=splits_dir)
if len(class_info) != len(class_names):
warnings.warn(
"""The 'classes.txt' file has a different length than the 'info.txt' file.
If a class has no information whatsoever you should leave that classes row empty or put a '-' symbol.
The API will run with no info until this is solved.""")
class_info = None
if class_info is None:
class_info = ['' for _ in range(len(class_names))]
# Load training configuration
conf_path = os.path.join(paths.get_conf_dir(), 'conf.json')
with open(conf_path) as f:
conf = json.load(f)
update_with_saved_conf(conf)
# Load the model
model = load_model(os.path.join(paths.get_checkpoints_dir(), ckpt_name),
custom_objects=utils.get_custom_objects())
graph = tf.get_default_graph()
# Set the model as loaded
loaded_ts = timestamp
loaded_ckpt = ckpt_name
def train_fn(TIMESTAMP, CONF):
paths.timestamp = TIMESTAMP
paths.CONF = CONF
utils.create_dir_tree()
utils.backup_splits()
# Load the training data
X_train, y_train = load_data_splits(splits_dir=paths.get_ts_splits_dir(),
im_dir=paths.get_images_dir(),
split_name='train')
# Load the validation data
if (CONF['training']['use_validation']) and ('val.txt' in os.listdir(paths.get_ts_splits_dir())):
X_val, y_val = load_data_splits(splits_dir=paths.get_ts_splits_dir(),
im_dir=paths.get_images_dir(),
split_name='val')
else:
print('No validation data.')
X_val, y_val = None, None
CONF['training']['use_validation'] = False
# Load the class names
class_names = load_class_names(splits_dir=paths.get_ts_splits_dir())
# Update the configuration
CONF['model']['preprocess_mode'] = model_utils.model_modes[CONF['model']['modelname']]
CONF['training']['batch_size'] = min(CONF['training']['batch_size'], len(X_train))
if CONF['model']['num_classes'] is None:
CONF['model']['num_classes'] = len(class_names)
assert CONF['model']['num_classes'] >= np.amax(y_train), "Your train.txt file has more categories than those defined in classes.txt"
if CONF['training']['use_validation']:
assert CONF['model']['num_classes'] >= np.amax(y_val), "Your val.txt file has more categories than those defined in classes.txt"
# Compute the class weights
if CONF['training']['use_class_weights']:
class_weights = compute_classweights(y_train,
max_dim=CONF['model']['num_classes'])
else:
class_weights = None
# Compute the mean and std RGB values
if CONF['dataset']['mean_RGB'] is None:
CONF['dataset']['mean_RGB'], CONF['dataset']['std_RGB'] = compute_meanRGB(X_train)
#Create data generator for train and val sets
train_gen = data_sequence(X_train, y_train,
batch_size=CONF['training']['batch_size'],
num_classes=CONF['model']['num_classes'],
im_size=CONF['model']['image_size'],
mean_RGB=CONF['dataset']['mean_RGB'],
std_RGB=CONF['dataset']['std_RGB'],
preprocess_mode=CONF['model']['preprocess_mode'],
aug_params=CONF['augmentation']['train_mode'])
train_steps = int(np.ceil(len(X_train)/CONF['training']['batch_size']))
if CONF['training']['use_validation']:
val_gen = data_sequence(X_val, y_val,
batch_size=CONF['training']['batch_size'],
num_classes=CONF['model']['num_classes'],
im_size=CONF['model']['image_size'],
mean_RGB=CONF['dataset']['mean_RGB'],
std_RGB=CONF['dataset']['std_RGB'],
preprocess_mode=CONF['model']['preprocess_mode'],
aug_params=CONF['augmentation']['val_mode'])
val_steps = int(np.ceil(len(X_val)/CONF['training']['batch_size']))
else:
val_gen = None
val_steps = None
# Launch the training
t0 = time.time()
# Create the model and compile it
model, base_model = model_utils.create_model(CONF)
# Get a list of the top layer variables that should not be applied a lr_multiplier
base_vars = [var.name for var in base_model.trainable_variables]
all_vars = [var.name for var in model.trainable_variables]
top_vars = set(all_vars) - set(base_vars)
top_vars = list(top_vars)
# Set trainable layers
if CONF['training']['mode'] == 'fast':
for layer in base_model.layers:
layer.trainable = False
model.compile(optimizer=customAdam(lr=CONF['training']['initial_lr'],
amsgrad=True,
lr_mult=0.1,
excluded_vars=top_vars
),
loss='categorical_crossentropy',
metrics=['accuracy'])
history = model.fit_generator(generator=train_gen,
steps_per_epoch=train_steps,
epochs=CONF['training']['epochs'],
class_weight=class_weights,
validation_data=val_gen,
validation_steps=val_steps,
callbacks=utils.get_callbacks(CONF),
verbose=1, max_queue_size=5, workers=4,
use_multiprocessing=True, initial_epoch=0)
# Saving everything
print('Saving data to {} folder.'.format(paths.get_timestamped_dir()))
print('Saving training stats ...')
stats = {'epoch': history.epoch,
'training time (s)': round(time.time()-t0, 2),
'timestamp': TIMESTAMP}
stats.update(history.history)
stats = json_friendly(stats)
stats_dir = paths.get_stats_dir()
with open(os.path.join(stats_dir, 'stats.json'), 'w') as outfile:
json.dump(stats, outfile, sort_keys=True, indent=4)
print('Saving the configuration ...')
model_utils.save_conf(CONF)
print('Saving the model to h5...')
fpath = os.path.join(paths.get_checkpoints_dir(), 'final_model.h5')
model.save(fpath,
include_optimizer=False)
# print('Saving the model to protobuf...')
# fpath = os.path.join(paths.get_checkpoints_dir(), 'final_model.proto')
# model_utils.save_to_pb(model, fpath)
print('Finished')
# Set the timestamp
paths.timestamp = TIMESTAMP
# Load the data
print("++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++antes de class names")
class_names = load_class_names(splits_dir=paths.get_ts_splits_dir()) # INCISO: Estas son las clases que había en el modelo
# en el momento en el que estrenaste (dado por el timestamp). No las que tienes en data/dataset_files
print("----------------------------------------------------------------------despues de class names")
# Load training configuration
conf_path = os.path.join(paths.get_conf_dir(), 'conf.json')
with open(conf_path) as f:
conf = json.load(f)
# Load the model
print("--------------------------------------------------------------------------------------------------------------------------------------------------------------------------antes")
model = load_model(os.path.join(paths.get_checkpoints_dir(), MODEL_NAME))
#model = load_model(os.path.join(paths.get_checkpoints_dir(), MODEL_NAME), custom_objects=utils.get_custom_objects())
print("++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++después")
# INCISO: Ahora la parte que continúa está basada en el predicting a datasplit txt file que incluye Ignacio en el notebook
# 3.0 . Esta preparación previa es necesaria para computar la matriz de confusión.
#
# OJO: ahora lo que le vas a dar para testear el modelo dado por el timestamp SÍ se encuentra en data/dataset_files
# Y ES CON LO QUE TÚ QUIERES TESTEAR EL MODELO.
SPLIT_NAME = input("Indica el nombre del split con el que evaluas. Es de data/dataset_files. Ejemplos: val train ...: ")
# Load the data
X, y = load_data_splits(splits_dir=paths.get_ts_splits_dir(),
im_dir=conf['general']['images_directory'],
split_name=SPLIT_NAME)
# Predict
# Añade esto si quieres no usar aumentacion en la validacion:
#
def load_inference_model():
"""
Load a model for prediction.
If several timestamps are available in `./models` it will load `.models/api` or the last timestamp if `api` is not
available.
If several checkpoints are available in `./models/[timestamp]/ckpts` it will load
`.models/[timestamp]/ckpts/final_model.h5` or the last checkpoint if `final_model.h5` is not available.
"""
global loaded, graph, model, conf, class_names, class_info
# Set the timestamp
timestamps = next(os.walk(paths.get_models_dir()))[1]
if not timestamps:
raise BadRequest(
"""You have no models in your `./models` folder to be used for inference.
Therefore the API can only be used for training.""")
else:
if 'api' in timestamps:
TIMESTAMP = 'api'
else:
TIMESTAMP = sorted(timestamps)[-1]
paths.timestamp = TIMESTAMP
print('Using TIMESTAMP={}'.format(TIMESTAMP))
# Set the checkpoint model to use to make the prediction
ckpts = os.listdir(paths.get_checkpoints_dir())
if not ckpts:
raise BadRequest(
"""You have no checkpoints in your `./models/{}/ckpts` folder to be used for inference.
Therefore the API can only be used for training.""".format(
TIMESTAMP))
else:
if 'final_model.h5' in ckpts:
MODEL_NAME = 'final_model.h5'
else:
MODEL_NAME = sorted(
[name for name in ckpts if name.endswith('*.h5')])[-1]
print('Using MODEL_NAME={}'.format(MODEL_NAME))
# Clear the previous loaded model
K.clear_session()
# Load the class names and info
splits_dir = paths.get_ts_splits_dir()
class_names = load_class_names(splits_dir=splits_dir)
class_info = None
if 'info.txt' in os.listdir(splits_dir):
class_info = load_class_info(splits_dir=splits_dir)
if len(class_info) != len(class_names):
warnings.warn(
"""The 'classes.txt' file has a different length than the 'info.txt' file.
If a class has no information whatsoever you should leave that classes row empty or put a '-' symbol.
The API will run with no info until this is solved.""")
class_info = None
if class_info is None:
class_info = ['' for _ in range(len(class_names))]
# Load training configuration
conf_path = os.path.join(paths.get_conf_dir(), 'conf.json')
with open(conf_path) as f:
conf = json.load(f)
# Load the model
model = load_model(os.path.join(paths.get_checkpoints_dir(),
MODEL_NAME),
custom_objects=utils.get_custom_objects())
graph = tf.get_default_graph()
# Set the model as loaded
loaded = True