def get_bands(msi, bands):
"""
TODO SW: document and test
"""
msi.set_image(imgmani.get_bands(msi.get_image(), bands))
if msi.get_wavelengths() is not None:
msi.set_wavelengths(msi.get_wavelengths()[bands])
return msi
def get_bands(msi, bands):
"""
TODO SW: document and test
"""
msi.set_image(imgmani.get_bands(msi.get_image(), bands))
if msi.get_wavelengths() is not None:
msi.set_wavelengths(msi.get_wavelengths()[bands])
return msi
def plot_images(msi):
"""plot the images as a 2d image array, one image for
each wavelength."""
nr_wavelengths = msi.get_image().shape[-1]
f, axarr = plt.subplots(1, nr_wavelengths)
for i, a in enumerate(axarr):
one_band_image = imgmani.get_bands(msi.get_image(), i)
im = a.imshow(np.squeeze(one_band_image))
a.set_title("band nr " + str(i), fontsize=5)
divider_dsp = make_axes_locatable(a)
cax_dsp = divider_dsp.append_axes("right", size="10%", pad=0.1)
cbar = plt.colorbar(im, cax=cax_dsp)
cbar.ax.tick_params(labelsize=5)
a.xaxis.set_visible(False)
a.yaxis.set_visible(False)
def plot_images(msi):
"""plot the images as a 2d image array, one image for
each wavelength."""
nr_wavelengths = msi.get_image().shape[-1]
f, axarr = plt.subplots(1, nr_wavelengths)
for i, a in enumerate(axarr):
one_band_image = imgmani.get_bands(msi.get_image(), i)
im = a.imshow(np.squeeze(one_band_image))
a.set_title("band nr " + str(i), fontsize=5)
divider_dsp = make_axes_locatable(a)
cax_dsp = divider_dsp.append_axes("right", size="10%", pad=0.1)
cbar = plt.colorbar(im, cax=cax_dsp)
cbar.ax.tick_params(labelsize=5)
a.xaxis.set_visible(False)
a.yaxis.set_visible(False)
