def update_cellular_component_hierarchy():
logger.info('--Updating GO cellular components----')
g = load_latest_go()
component_map, component_part_map = go_client.get_cellular_components(g)
# Save the cellular component ID->name mappings
fname = os.path.join(path, 'cellular_components.tsv')
logger.info('Saving into %s' % fname)
with open(fname, 'wb') as fh:
fh.write('id\tname\n'.encode('utf-8'))
for comp_id, comp_name in sorted(component_map.items(),
key=lambda x: x[0]):
fh.write(('%s\t%s\n' % (comp_id, comp_name)).encode('utf-8'))
# Create the cellular component hierarchy
gg = mcch.make_component_hierarchy(component_map, component_part_map)
mcch.save_hierarchy(gg, mcch.rdf_file)
def update_cellular_component_hierarchy():
logger.info('--Updating GO cellular components----')
g = load_latest_go()
component_map, component_part_map = go_client.get_cellular_components(g)
# Save the cellular component ID->name mappings
fname = os.path.join(path, 'cellular_components.tsv')
logger.info('Saving into %s' % fname)
with open(fname, 'wb') as fh:
fh.write('id\tname\n'.encode('utf-8'))
for comp_id, comp_name in sorted(component_map.items(),
key=lambda x: x[0]):
fh.write(('%s\t%s\n' % (comp_id, comp_name)).encode('utf-8'))
# Create the cellular component hierarchy
gg = mcch.make_component_hierarchy(component_map, component_part_map)
mcch.save_hierarchy(gg, mcch.rdf_file)