def test_find_none(self):
"""
Given a directory with no sequencing run directories in it, make sure an empty list is returned
:return:
"""
directory = os.path.join(path_to_module, "no_dirs")
res = common.find_directory_list(directory)
self.assertEqual(res, [])
def test_find_three(self):
"""
Given a directory with 3 run directories in it, make sure all 3 directories are included in result
:return:
"""
directory = os.path.join(path_to_module, "three_dirs")
dir_1 = os.path.join(directory, "first")
dir_2 = os.path.join(directory, "second")
dir_3 = os.path.join(directory, "third")
res = common.find_directory_list(directory)
self.assertIn(dir_1, res)
self.assertIn(dir_2, res)
self.assertIn(dir_3, res)
def find_runs(self, directory):
"""
find a list of run directories in the directory given
:param directory:
:return: list of DirectoryStatus objects
"""
logging.info("looking for runs in {}".format(directory))
runs = []
directory_list = common.find_directory_list(directory)
for d in directory_list:
runs.append(progress.get_directory_status(d, self.get_required_file_list()))
return runs