def validate_input(input_spec: InputSpec):
"""Make sure required input directories exist
Args:
input_spec (InputSpec): input file specification
"""
assert input_spec.validate()
def test_validate_fails_missing():
df = pd.DataFrame([{
"filepath":
Path("tests/test_files/full_scan_nat_rep1.mzml"),
}])
inp = InputSpec(df)
assert inp.validate() == False
def test_validate_fails_missing():
df = pd.DataFrame([{
"filepath": Path("missing"),
"organism": "org1",
"type": "f",
"element": "c",
"isotope": 13,
"condition": "cond1",
"replicate": 1,
}])
inp = InputSpec(df)
assert inp.validate() == False
def test_validate_fails_duplicated():
df = pd.DataFrame([
{
"filepath": Path("tests/test_files/full_scan_nat_rep1.mzml"),
"organism": "org1",
"type": "f",
"element": "c",
"isotope": 13,
"condition": "cond1",
"replicate": 1,
},
{
"filepath": Path("tests/test_files/full_scan_nat_rep1.mzml"),
"organism": "org1",
"type": "f",
"element": "c",
"isotope": 13,
"condition": "cond1",
"replicate": 2,
},
])
inp = InputSpec(df)
assert inp.validate() == False