def test_input_value_memselect_nocodeenv(self):
inp = MemorySelector()
self.assertEqual(
"$(inputs.runtime_memory)",
cwl.get_input_value_from_potential_selector_or_generator(
inp, code_environment=False),
)
def test_input_value_inpselect_nocodeenv(self):
inp = InputSelector("threads")
self.assertEqual(
"$(inputs.threads)",
cwl.get_input_value_from_potential_selector_or_generator(
inp, code_environment=False),
)
def test_string_formatter_one_input_selector_param(self):
b = StringFormatter("an input {arg}",
arg=InputSelector("random_input"))
res = cwl.get_input_value_from_potential_selector_or_generator(
b, code_environment=False)
self.assertEqual(
'$("an input {arg}".replace(/\{arg\}/g, inputs.random_input))',
res)
def test_input_value_cpuselect_codeenv(self):
inp = CpuSelector()
self.assertEqual(
"inputs.runtime_cpu"
"",
cwl.get_input_value_from_potential_selector_or_generator(
inp, code_environment=True),
)
def test_input_value_cwl_callable(self):
class NonCallableCwl:
def cwl(self):
return "unbelievable"
self.assertEqual(
"unbelievable",
cwl.get_input_value_from_potential_selector_or_generator(
NonCallableCwl()),
)
def test_string_formatter_two_param(self):
# vardict input format
b = StringFormatter(
"{tumorName}:{normalName}",
tumorName=InputSelector("tumorInputName"),
normalName=InputSelector("normalInputName"),
)
res = cwl.get_input_value_from_potential_selector_or_generator(b)
self.assertEqual(
'$("{tumorName}:{normalName}".replace(/\{tumorName\}/g, inputs.tumorInputName).replace(/\{normalName\}/g, inputs.normalInputName))',
res,
)
def test_string_formatter_one_string_param(self):
b = StringFormatter("there's {one} arg", one="a string")
res = cwl.get_input_value_from_potential_selector_or_generator(b)
self.assertEqual(
'$("there\'s {one} arg".replace(/\{one\}/g, "a string"))', res)
def test_string_formatter(self):
b = StringFormatter("no format")
res = cwl.get_input_value_from_potential_selector_or_generator(b)
self.assertEqual("no format", res)
def test_input_value_int_nocodeenv(self):
self.assertEqual(
42,
cwl.get_input_value_from_potential_selector_or_generator(
42, code_environment=False),
)
def test_input_value_string_nocodeenv(self):
self.assertEqual(
"TestString",
cwl.get_input_value_from_potential_selector_or_generator(
"TestString", code_environment=False),
)
def test_input_value_none_codeenv(self):
self.assertEqual(
None,
cwl.get_input_value_from_potential_selector_or_generator(
None, code_environment=True),
)
