def batch_export():
from Experiment import config
dss = __DATASOURCE__.getSelectedDatasets()
if dss is None or len(dss) == 0:
print 'Please select one or more files to export.'
return
path = selectSaveFolder()
if path == None:
return
fi = File(path)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + path
return
eid = int(experiment_id.value)
exp_folder = path + '/exp' + str(eid)
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + exp_folder
return
ILL_folder = exp_folder + '/ILLfiles'
exp_folder += '/Datafiles'
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + exp_folder
return
fi = File(ILL_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + ILL_folder
return
count = 0
for dinfo in dss:
loc = dinfo.getLocation()
f = File(loc)
fsn = f.getName()
# count = int(fsn[3:10])
# new_fname = 'TAIPAN_exp' + ('%(value)04d' % {'value':eid}) + '_scan' + ('%(value)04d' % {'value':count}) + '.dat'
df.datasets.clear()
try:
export.graffiti_export(df, loc, exp_folder, eid, get_prof_value)
except:
traceback.print_exc()
traceback.print_exc(file = __buffer_logger__)
df.datasets.clear()
try:
export.ILL_export(df, loc, ILL_folder, eid, get_prof_value)
except:
traceback.print_exc()
traceback.print_exc(file = __buffer_logger__)
# export.graffiti_export(df, loc, exp_folder, eid, get_prof_value)
# df.datasets.clear()
# export.ILL_export(df, loc, ILL_folder, eid, get_prof_value)
print 'done'
def batch_export():
from Experiment import config
dss = __get_selected_files__()
if dss is None or len(dss) == 0:
print 'Please select one or more files to export.'
return
path = selectSaveFolder()
if path == None:
return
fi = File(path)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + path
return
eid = int(experiment_id.value)
exp_folder = path + '/exp' + str(eid)
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + exp_folder
return
HMM_folder = exp_folder + '/HMMfiles'
fi = File(HMM_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + HMM_folder
return
count = 0
for loc in dss:
ds = df[str(loc)]
if len(__exc_masks__) > 0:
res = copy(ds.get_reduced())
for mask in __exc_masks__:
res[:, mask[2]:mask[3], mask[0]:mask[1]] = 0
else :
res = ds.get_reduced(1)
if len(__inc_masks__) > 0:
r = dataset.instance(res.shape, dtype=int)
for mask in __inc_masks__:
r[:, mask[2]:mask[3], mask[0]:mask[1]] = res[:, mask[2]:mask[3], mask[0]:mask[1]]
else :
r = res
data = r.sum(0)
if not ds.axes is None and len(ds.axes) > 0:
if not axis_lock.value:
axis_name.value = ds.axes[0].name
if len(data == 1) :
ds2 = Dataset(data, axes=[[ds[str(axis_name.value)]]])
else :
axis = ds[str(axis_name.value)]
ds2 = Dataset(data, axes=[axis])
ds2.title = ds.title
# count = int(fsn[3:10])
# new_fname = 'TAIPAN_exp' + ('%(value)04d' % {'value':eid}) + '_scan' + ('%(value)04d' % {'value':count}) + '.dat'
export.HMM_intensity_export(ds2, ds.bm1_counts, HMM_folder, eid, get_pref_value, reg_list.value)
print 'done'
def batch_export():
from Experiment import config
dss = __DATASOURCE__.getSelectedDatasets()
if dss is None or len(dss) == 0:
print "Please select one or more files to export."
return
path = selectSaveFolder()
if path == None:
return
fi = File(path)
if not fi.exists():
if not fi.mkdir():
print "Error: failed to make directory: " + path
return
eid = int(get_pref_value(EXPERIMENT_ID_PNAME))
exp_folder = path + "/exp" + str(eid)
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print "Error: failed to make directory: " + exp_folder
return
HMM_folder = exp_folder + "/HMMfiles"
fi = File(HMM_folder)
if not fi.exists():
if not fi.mkdir():
print "Error: failed to make directory: " + HMM_folder
return
count = 0
for dinfo in dss:
loc = dinfo.getLocation()
ds = df[str(loc)]
if len(__exc_masks__) > 0:
res = copy(ds.get_reduced())
for mask in __exc_masks__:
res[:, mask[2] : mask[3], mask[0] : mask[1]] = 0
else:
res = ds.get_reduced()
if len(__inc_masks__) > 0:
r = dataset.instance(res.shape, dtype=int)
for mask in __inc_masks__:
r[:, mask[2] : mask[3], mask[0] : mask[1]] = res[:, mask[2] : mask[3], mask[0] : mask[1]]
else:
r = res
data = r.sum(0)
if not ds.axes is None and len(ds.axes) > 0:
if not axis_lock.value:
axis_name.value = ds.axes[0].name
axis = ds[str(axis_name.value)]
ds2 = Dataset(data, axes=[axis])
ds2.title = ds.title
# count = int(fsn[3:10])
# new_fname = 'TAIPAN_exp' + ('%(value)04d' % {'value':eid}) + '_scan' + ('%(value)04d' % {'value':count}) + '.dat'
export.HMM_intensity_export(ds2, ds.bm1_counts, HMM_folder, eid, get_prof_value, reg_list.value)
print "done"
def checkDiscoveryResources(mapingFilesListFileName, userExtDir, localFramework, intermediatesDir):
try:
initialMappingFileNameList = []
mappingFileNameList = []
## Get mapping file list
mappingFilesListFile = File(mapingFilesListFileName)
if mappingFilesListFile.exists() and mappingFilesListFile.canRead():
initialMappingFileNameList = getMappingFileNames(mapingFilesListFileName)
if initialMappingFileNameList == None or len(initialMappingFileNameList) < 1:
excInfo = ('No mapping files found in <%s>' % mapingFilesListFileName)
localFramework.reportError(excInfo)
logger.error(excInfo)
return None
else:
excInfo = ('Error reading file <%s>' % mapingFilesListFileName)
localFramework.reportError(excInfo)
logger.error(excInfo)
return None
## Make sure that at least one of the mapping files in the list above
## exists and is readable
mappingFileExists = 'false'
for mappingFileName in initialMappingFileNameList:
mappingFileAbsolutePath = userExtDir + 'data\\' + mappingFileName + '.xml'
mappingFile = File(mappingFileAbsolutePath)
if mappingFile.exists() and mappingFile.canRead():
debugPrint(4, '[' + SCRIPT_NAME + ':checkDiscoveryResources] Mapping file <%s> found!' % mappingFileAbsolutePath)
mappingFileExists = 'true'
## Add file with path to mappingFileNameList
#mappingFileNameList.append(mappingFileAbsolutePath)
mappingFileNameList.append(mappingFileName)
else:
logger.info('Mapping file <%s> NOT found!' % mappingFileAbsolutePath)
if mappingFileExists == 'false':
excInfo = 'Error reading mapping file(s)!'
localFramework.reportError(excInfo)
logger.warn(excInfo)
return None
## Make sure intermediates directory exists and is writable
intermediatesDirectory = File(intermediatesDir)
if intermediatesDirectory.exists() and intermediatesDirectory.canRead() and intermediatesDirectory.canWrite():
debugPrint(5, '[' + SCRIPT_NAME + ':checkDiscoveryResources] Intermediates directory <%s> present and writable!' % intermediatesDir)
## Clean up intermediate XML directory
## TODO remove cleanUpDirectory(intermediatesDir)
else:
excInfo = ('Intermediates directory <%s> not found or is read-only' % intermediatesDir)
localFramework.reportError(excInfo)
logger.warn(excInfo)
return None
## If we made it this far, all resources are good
return mappingFileNameList
except:
excInfo = logger.prepareJythonStackTrace('')
debugPrint('[' + SCRIPT_NAME + ':checkDiscoveryResources] Exception: <%s>' % excInfo)
pass
def batch_export():
from Experiment import config
dss = __get_selected_files__()
if dss is None or len(dss) == 0:
print 'Please select one or more files to export.'
return
path = selectSaveFolder()
if path == None:
return
fi = File(path)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + path
return
eid = int(experiment_id.value)
exp_folder = path + '/exp' + str(eid)
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + exp_folder
return
ILL_folder = exp_folder + '/ILLfiles'
exp_folder += '/Datafiles'
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + exp_folder
return
fi = File(ILL_folder)
if not fi.exists():
if not fi.mkdir():
print 'Error: failed to make directory: ' + ILL_folder
return
count = 0
flist = []
for loc in dss:
f = File(loc)
fsn = f.getName()
# count = int(fsn[3:10])
# new_fname = 'TAIPAN_exp' + ('%(value)04d' % {'value':eid}) + '_scan' + ('%(value)04d' % {'value':count}) + '.dat'
df.datasets.clear()
fn = export.graffiti_export(df, loc, exp_folder, eid, get_pref_value)
flist.append(fn)
df.datasets.clear()
fn = export.ILL_export(df, loc, ILL_folder, eid, get_pref_value)
flist.append(fn)
if len(flist) > 0:
zip_files(flist, 'TAIPAN_rd_' + str(int(time.time()))[2:] + '.zip')
print 'done'
def updateSimsRunning(self):
simsFinished = []
for sim in self.simsRunning:
timeFile = File(self.myProject.getProjectMainDirectory(), "simulations/"+sim+"/time.dat")
finishedFile = File(self.myProject.getProjectMainDirectory(), "simulations/"+sim+"/finished")
#print "Checking file: "+timeFile.getAbsolutePath() +", exists: "+ str(timeFile.exists())
if (((self.simulator == "NEURON") and timeFile.exists()) or
((self.simulator == "GENESIS") and finishedFile.exists())):
simsFinished.append(sim)
if(len(simsFinished)>0):
for sim in simsFinished:
self.simsRunning.remove(sim)
def __export__(fn):
if fn.__contains__('/'):
items = fn.split('/')
fn = items[-1]
input_path = __data_folder__ + '/' + fn
exp_id = get_prof_value('taipan.experiment.id')
exp_folder = __export_folder__ + '/exp' + exp_id
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdirs():
print 'Error: failed to make directory: ' + exp_folder
return
ILL_folder = exp_folder + '/ILLfiles'
exp_folder += '/Datafiles'
fi = File(exp_folder)
if not fi.exists():
if not fi.mkdirs():
print 'Error: failed to make directory: ' + exp_folder
return
fi = File(ILL_folder)
if not fi.exists():
if not fi.mkdirs():
print 'Error: failed to make directory: ' + ILL_folder
return
# df.datasets.clear()
# export.graffiti_export(df, input_path, exp_folder, int(exp_id), get_prof_value)
# df.datasets.clear()
# export.ILL_export(df, input_path, ILL_folder, int(exp_id), get_prof_value)
df.datasets.clear()
try:
export.graffiti_export(df, input_path, exp_folder, int(exp_id), get_prof_value)
except:
try:
export.graffiti_export(df, input_path, exp_folder, int(exp_id), get_prof_value)
except:
traceback.print_exc()
traceback.print_exc(file = __buffer_logger__)
df.datasets.clear()
try:
export.ILL_export(df, input_path, ILL_folder, int(exp_id), get_prof_value)
except:
try:
export.ILL_export(df, input_path, ILL_folder, int(exp_id), get_prof_value)
except:
traceback.print_exc()
traceback.print_exc(file = __buffer_logger__)
def createFileChooserDialog(filters, filename, prefs, prefkey, multiselect):
"""
Creates a file chooser dialog that remembers its last directory.
"""
fileChooser = JFileChooser()
# Add filters
if not hasattr(filters, '__iter__'):
filters = (filters,)
if filters:
for filter in filters:
fileChooser.addChoosableFileFilter(filter)
fileChooser.fileFilter = filters[0]
# Enable/disable multiple file select
fileChooser.setMultiSelectionEnabled(multiselect)
# Restore the last directory
if prefs and prefkey:
defaultDirName = prefs.get(prefkey, None)
if defaultDirName:
defaultDirectory = File(defaultDirName)
if defaultDirectory.exists():
fileChooser.currentDirectory = defaultDirectory
# Preset the file name
if filename:
fileChooser.selectedFile = File(fileChooser.currentDirectory, filename)
return fileChooser
def updateCmdForDeltaScanning(commandLine, Framework):
originalScanFileFolderPath = CollectorsParameters.PROBE_MGR_INVENTORY_XMLENRICHER_FILES_FOLDER + XmlEnricherConstants.ORIGINAL_FOLDER_NAME
originalScanFile = File(originalScanFileFolderPath, InventoryUtils.generateScanFileName(Framework))
if originalScanFile.exists():
scan = None
try:
try:
buffer = jarray.zeros(0x24, 'b')
fileSize = originalScanFile.length()
if fileSize > 0x24:
scan = RandomAccessFile(originalScanFile, "r")
scan.readFully(buffer)
if (buffer[0] == 0x1F) and ((buffer[1] & 0xFF) == 0x8B) and (buffer[2] == 0x08):
scan.seek(fileSize - 8)
scan.readFully(buffer, 0, 8)
crc32 = getInt(buffer, 0)
size = getInt(buffer, 4)
deltaParams = ' -oldscanid:' + str(crc32) + ' -oldscansize:' + str(size) + ' '
index = String(commandLine).indexOf(ENTERPRISE_MODE) + String(ENTERPRISE_MODE).length()
commandLine = commandLine[0:index] + deltaParams + commandLine[index + 1:]
logger.debug('Scanner execution command updated to ', commandLine)
except:
logger.debugException("Failed to calculate CRC32 and size of zipped scan file " + originalScanFile.getAbsolutePath())
finally:
if scan is not None:
try:
scan.close()
except:
pass
return commandLine
def validateDirectory(Framework):
exportDirectory = Framework.getTriggerCIData("Export Directory")
if exportDirectory != None and exportDirectory != "":
dir = File(exportDirectory)
if dir.exists() and dir.isDirectory():
return 1
return 0
def load_from_file(file_package,expected_class):
print("loading %s from %s" % (expected_class,file_package))
compiled_file = File(file_package.replace(".", "/") + "/" + expected_class + "$py.class")
source_file = File(file_package.replace(".", "/") + "/" + expected_class + ".py")
print("get request for controller %s. Compiled file outdated."%expected_class)
if compiled_file.exists():
if compiled_file.lastModified()<source_file.lastModified():
print("get request for controller %s. Compiled file outdated."%expected_class)
compiled_file.delete()
else:
print("get request for controller %s. Compiled file is up-to-date."%expected_class)
else:
print("get request for controller %s. Compiled file does not exists."%expected_class)
py_mod = imp.load_source("module_"+expected_class, source_file.getAbsolutePath())
if hasattr(py_mod, expected_class):
class_inst = getattr(py_mod,expected_class)
else:
class_inst =None
print(class_inst.__doc__)
print(class_inst.__name__)
return class_inst
def access(path, mode):
"""access(path, mode) -> True if granted, False otherwise
Use the real uid/gid to test for access to a path. Note that most
operations will use the effective uid/gid, therefore this routine can
be used in a suid/sgid environment to test if the invoking user has the
specified access to the path. The mode argument can be F_OK to test
existence, or the inclusive-OR of R_OK, W_OK, and X_OK.
"""
if not isinstance(mode, (int, long)):
raise TypeError('an integer is required')
f = File(sys.getPath(path))
result = True
if not f.exists():
result = False
if mode & R_OK and not f.canRead():
result = False
if mode & W_OK and not f.canWrite():
result = False
if mode & X_OK:
# NOTE: always False without jna-posix stat
try:
result = (stat(path).st_mode & _stat.S_IEXEC) != 0
except OSError:
result = False
return result
def registerExtenderCallbacks(self, callbacks):
self.autosave = None
self.callbacks = callbacks
if len(self.args) > 1 and not self.args[-1].startswith('-'):
fname = self.args[1].strip("'")
f = File(fname)
if f.exists():
callbacks.issueAlert('Loading %s..' % fname)
callbacks.restoreState(f)
conf = callbacks.saveConfig()
self.autosave = True if conf['suite.doAutoSave'] else False
conf['suite.doAutoSave'] = 'false'
active_type = conf['scanner.activecustomscopetype']
conf['scanner.activecustomscopetype'] = '0'
callbacks.loadConfig(conf)
print "Deactivate doAutoSave (%s -> false)" % (self.autosave,)
print "Deactivate active scanner (%s -> 0)" % (active_type,)
if self.autosave is None:
conf = callbacks.saveConfig()
print "Activate doAutoSave (%s -> true)" % (conf['suite.doAutoSave'],)
conf['suite.doAutoSave'] = 'true'
active_type = conf['scanner.activecustomscopetype']
conf['scanner.activecustomscopetype'] = '0'
print "Deactivate active scanner (%s -> 0)" % (active_type,)
callbacks.loadConfig(conf)
def setup_wls_cp():
home_dir=rb_config.getProperty('wls.oracle.home')
wls_name=rb_config.getProperty('wls.name')
if home_dir and wls_name:
weblogic_loc=File(home_dir + '/' + wls_name)
if weblogic_loc.exists():
return create_setenv(home_dir)
def stat(path):
"""stat(path) -> stat result
Perform a stat system call on the given path.
The Java stat implementation only returns a small subset of
the standard fields: size, modification time and change time.
"""
abs_path = sys.getPath(path)
try:
return stat_result.from_jnastat(_posix.stat(abs_path))
except NotImplementedError:
pass
except:
raise
f = File(abs_path)
if not f.exists():
raise OSError(errno.ENOENT, strerror(errno.ENOENT), path)
size = f.length()
mtime = f.lastModified() / 1000.0
mode = 0
if f.isDirectory():
mode = _stat.S_IFDIR
elif f.isFile():
mode = _stat.S_IFREG
if f.canRead():
mode = mode | _stat.S_IREAD
if f.canWrite():
mode = mode | _stat.S_IWRITE
return stat_result((mode, 0, 0, 0, 0, 0, size, mtime, mtime, 0))
def __getFile(self, packageDir, filename):
file = File(packageDir, filename)
if not file.exists():
out = FileOutputStream(file)
IOUtils.copy(Services.getClass().getResourceAsStream("/workflows/" + filename), out)
out.close()
return file
def check(fn='test.txt'):
f = File(fn)
if not f.exists():
raise support.TestError('"%s" should exist' % fn)
if not f.length():
raise support.TestError('"%s" should have contents' % fn)
os.remove(fn)
def getWatcherConfig(self):
json = JsonConfig()
watcherPath = json.get("watcher/path", "${fascinator.home}/watcher)")
configFile = File("%s/app/config.json" % watcherPath)
if configFile.exists():
return JsonConfigHelper(configFile)
return None
def __activate__(self, context):
self.log = context["log"]
self.request = context["request"]
self.sessionState = context["sessionState"]
self.sessionState.set("username","admin")
processingSet = self.request.getParameter("processingSet")
self.procMsg = None
# read configuration and trigger processing stream sets
# storing the return object on the map
configFilePath = FascinatorHome.getPath("process")+"/processConfig.json"
procConfigFile = File(configFilePath)
if procConfigFile.exists() == True:
self.dataMap = HashMap()
self.dataMap.put("indexer", context['Services'].getIndexer())
self.procConfigJson = JsonSimple(procConfigFile)
for configObj in self.procConfigJson.getJsonArray():
configJson = JsonSimple(configObj)
procId = configJson.getString("", "id")
if processingSet is not None:
if procId == processingSet:
self.execProcSet(procId, configJson)
else:
self.execProcSet(procId, configJson)
if self.procMsg is None:
self.procMsg = "Processing complete!"
else:
self.procMsg = "Configuration file does not exist: " + configFilePath
def DiscoveryMain(Framework):
logger.info('Start Phase 1 ... Pull from ARIS')
# Set global framework
global theFramework
theFramework = Framework
## Make sure we have an input data file from ARIS
ARISfileName = Framework.getParameter('ARIS_XML_file') or None
ARISfile = File(ARISfileName)
if not (ARISfile and ARISfile.exists() and ARISfile.canRead()):
excInfo = ('ARIS XML input file is not specified or is invalid!')
Framework.reportError(excInfo)
logger.error(excInfo)
return None
## Check that the language parameter is set - default to US English
requestedLocaleID = Framework.getParameter('ARISLocaleId') or '&LocaleId.USen;'
if not requestedLocaleID:
logger.warn('ARIS LocaleID parameter is not set...defaulting to US English')
requestedLocaleID = '&LocaleId.USen;'
# File and directory names
userExtDir = CollectorsParameters.BASE_PROBE_MGR_DIR + CollectorsParameters.getDiscoveryResourceFolder() + '\\TQLExport\\ARIS\\'
intermediatesDir = userExtDir + 'inter\\'
mapingFilesListFileName = userExtDir + 'tqls.txt'
mappingFileNameList = checkDiscoveryResources(mapingFilesListFileName, userExtDir, Framework, intermediatesDir)
if not mappingFileNameList:
return None
## Get attribute names from mapping file(s)
## This is a list of extended attributes to be retrieved from ARIS
for mappingFileName in mappingFileNameList:
(requestedSourceObjectTypeList, requestedSourceRelationshipTypeList) = getMapping(userExtDir + 'data\\' + mappingFileName + '.xml')
if requestedSourceObjectTypeList and requestedSourceRelationshipTypeList:
arisObjectMap = processARISXML(ARISfile, requestedSourceObjectTypeList, requestedSourceRelationshipTypeList, requestedLocaleID)
intermediateXmlDoc = None
if arisObjectMap:
intermediateXmlDoc = buildIntermediateXML(arisObjectMap)
intermediateXmlLocation = intermediatesDir + mappingFileName + '.xml'
else:
Framework.reportWarning('No CIs found in the ARIS XML file')
if intermediateXmlDoc:
try:
xmlOutputter = XMLOutputter()
xmlOutputter.output(intermediateXmlDoc, FileOutputStream(intermediateXmlLocation))
except:
excInfo = logger.prepareJythonStackTrace('')
Framework.reportError('Error writing intermediate file: <%s>' % intermediateXmlLocation)
logger.warn('[' + SCRIPT_NAME + ':DiscoveryMain] Exception: <%s>' % excInfo)
pass
else:
Framework.reportWarning('Error creating intermediate XML')
else:
logger.warn('[' + SCRIPT_NAME + ':DiscoveryMain] Unable to process mapping file: <%s>' % mappingFileName)
Framework.reportError(' Unable to process mapping file: <%s>' % mappingFileName)
logger.info('End Phase 1.... Pull from ARIS')
def getsize(path):
f = File(path)
size = f.length()
# Sadly, if the returned length is zero, we don't really know if the file
# is zero sized or does not exist.
if size == 0 and not f.exists():
raise OSError(0, 'No such file or directory', path)
return size
def __checkIfScriptFileIsValid(self, scriptFile):
if scriptFile == "":
result = "Invalid script file"
self.throw_error("Invalid script file")
script = File(scriptFile)
if not script.exists():
result = "Script file is not exist"
self.throw_error("Script file is not exist")
def canOpenFile(self):
#HACK check if mimetypes match between index and real file
#dcFormat = self.__json.get("response/docs/dc_format", "")
#if dcFormat is not None:
# dcFormat = dcFormat[1:-1]
#return dcFormat == self.__mimeType
f = File(self.getObject().getId())
return f.exists();
def getatime(path):
# We can't detect access time so we return modification time. This
# matches the behaviour in os.stat().
path = _tostr(path, "getatime")
f = File(path)
if not f.exists():
raise OSError(0, 'No such file or directory', path)
return f.lastModified() / 1000.0
def getsize(path):
path = _tostr(path, "getsize")
f = File(path)
size = f.length()
# Sadly, if the returned length is zero, we don't really know if the file
# is zero sized or does not exist.
if size == 0 and not f.exists():
raise OSError(0, 'No such file or directory', path)
return size
def mkjar():
jarfile = File(jardir, jarfn)
# create a .jar file containing a .class file
if not jarfile.exists():
support.compileJava("%s/%s/%s.java" % (jardir, package, clazz))
jarPacker = support.JarPacker(jarfile, bufsize=128)
jarPacker.addFile(clazzfile, parentDirName=package)
jarPacker.close()
return jardir + '/' + jarfn, package, clazz
def getsize(path):
path = _tostr(path, "getsize")
f = File(sys.getPath(path))
size = f.length()
# Sadly, if the returned length is zero, we don't really know if the file
# is zero sized or does not exist.
if size == 0 and not f.exists():
raise OSError(0, "No such file or directory", path)
return size
def savePreviousArguments(managedServerName):
from java.io import File
from java.io import FileOutputStream
from java.util import Properties
from java.util import Date
from java.text import SimpleDateFormat
import string
startToEdit()
# parameter on the wsdl ant task call
fileLocation = sys.argv[1].replace("\\", "/")
print "The backup file location is"
print fileLocation
try:
dateFormat = SimpleDateFormat('_d_MMM_yyyy_HH_mm_ss')
date = Date()
formattedDate = dateFormat.format(date)
print formattedDate
except:
print "The date cannot be created/formatted"
try:
propsFile = File(fileLocation + managedServerName + formattedDate +
"_config.bkp")
print propsFile.exists()
if (propsFile.exists() == 0):
propsFile.createNewFile()
except:
print "The file cannot be created on:"
print propsFile.getAbsoluteFile()
dumpStack()
previousProperties = Properties()
print '===> Saving the previous arguments - ' + managedServerName
cd('/Servers/' + managedServerName)
print "Getting the Classpath"
classPath = cmo.getServerStart().getClassPath()
print classPath
if classPath == None:
classPath = ""
previousProperties.setProperty("classPath", classPath)
print "Saving Arguments to file"
previousProperties.store(FileOutputStream(propsFile), None)
print '===> Saved arguments! Please verify the file on:' + fileLocation + "in" + managedServerName
def recordDataReqForToMatrixScript(min, inc, max, exciterList, outputPath):
outputFolder = File(outputPath)
if not outputFolder.exists():
outputFolder.mkdir() # ensure folder for .txt file exists
varFile = open(outputPath + "toMatrixVariables.txt", "w")
varFile.write(str(min) + "\n")
varFile.write(str(inc) + "\n")
varFile.write(str(max) + "\n")
varFile.write(str(exciterList.size()))
varFile.close()
def updateSimsRunning(self):
simsFinished = []
for sim in self.simsRunning:
timeFile = File(self.myProject.getProjectMainDirectory(), "simulations/" + sim + "/time.dat")
if (timeFile.exists()):
simsFinished.append(sim)
if(len(simsFinished) > 0):
for sim in simsFinished:
self.simsRunning.remove(sim)
def checkPullsims(simList, projectFileName):
slashparts = projectFileName.split('/')
basefolder = '/'.join(slashparts[:-1]) + '/'
for sim in simList:
projectFullDir = basefolder + "/simulations/" + sim
pullFileName = projectFullDir + "/pullsim.sh"
pullFile = File(basefolder, "simulations/" + sim + "/pullsim.sh")
# and not self.tempSimConfig.getMpiConf().isRemotelyExecuted()
if (pullFile.exists()):
print "Warning, found file from a previous parallel execution - please delete:" + pullFileName
def updateSimsRunning():
for sim in allRunningSims:
timeFile = File(project.getProjectMainDirectory(), "simulations/"+sim+"/time.dat")
timeFile2 = File(project.getProjectMainDirectory(), "simulations/"+sim+"/time.txt") # for PSICS...
print "Checking file: "+timeFile.getAbsolutePath() +", exists: "+ str(timeFile.exists())
if (timeFile.exists()):
allFinishedSims.append(sim)
allRunningSims.remove(sim)
else:
print "Checking file: "+timeFile2.getAbsolutePath() +", exists: "+ str(timeFile2.exists())
if (timeFile2.exists()):
allFinishedSims.append(sim)
allRunningSims.remove(sim)
print "allFinishedSims: "+str(allFinishedSims)
print "allRunningSims: "+str(allRunningSims)
def getUniqueValueFileByField(name, path, formatName):
filename = str(name) + "." + formatName.lower()
newpath = os.path.join(path, filename)
f = File(newpath)
i = 0
while f.exists():
nid = str(name) + str(i) + "." + formatName.lower()
f = File(os.path.join(path, nid))
i += 1
return f
def savePreviousArguments(managedServerName):
from java.io import File
from java.io import FileOutputStream
from java.util import Properties
from java.util import Date
from java.text import SimpleDateFormat
import string
startToEdit()
# parameter on the wsdl ant task call
fileLocation = sys.argv[1].replace("\\","/")
print "The backup file location is"
print fileLocation
try:
dateFormat = SimpleDateFormat('_d_MMM_yyyy_HH_mm_ss')
date = Date()
formattedDate = dateFormat.format(date)
print formattedDate
except:
print "The date cannot be created/formatted"
try:
propsFile = File(fileLocation+ managedServerName + formattedDate+"_config.bkp");
print propsFile.exists()
if(propsFile.exists() == 0):
propsFile.createNewFile()
except:
print "The file cannot be created on:"
print propsFile.getAbsoluteFile()
dumpStack()
previousProperties = Properties()
print '===> Saving the previous arguments - ' + managedServerName
cd('/Servers/'+managedServerName)
print "Getting the VMArgs"
vmArgs = cmo.getServerStart().getArguments()
print vmArgs
if vmArgs == None:
vmArgs = ""
previousProperties.setProperty("vmArgs", vmArgs)
print "Saving Arguments to file"
previousProperties.store(FileOutputStream(propsFile),None)
print '===> Saved arguments! Please verify the file on:'+ fileLocation + "in" + managedServerName
def EzDirectoryOpenDialog(initialDirectory, stage=None):
from javafx.stage import DirectoryChooser
from java.io import File
dlg = DirectoryChooser()
if initialDirectory:
f = File(initialDirectory)
if f.exists() and f.isDirectory():
dlg.setInitialDirectory(f);
dlg.setTitle("Select Folder");
return dlg.showDialog(stage)
def updateSimsRunning():
simsFinished = []
for sim in simsRunning:
timeFile = File(myProject.getProjectMainDirectory(), "simulations/"+sim+"/time.dat")
#print "Checking file: "+timeFile.getAbsolutePath() +", exists: "+ str(timeFile.exists())
if (timeFile.exists()):
simsFinished.append(sim)
if(len(simsFinished)>0):
for sim in simsFinished:
simsRunning.remove(sim)
def writeResponseToStatusResponseCache(self, jobId, jobStatus):
curationStatusRespones = File(FascinatorHome.getPath() +
"/curation-status-responses")
if curationStatusRespones.exists():
FileUtils.forceMkdir(curationStatusRespones)
FileUtils.writeStringToFile(
File(curationStatusRespones.getPath() +
"/" + Integer(jobId).toString() + ".json"),
jobStatus.toString(True))
def empty_user(self):
strRootDir = request.getServletContext().getRealPath("/")
strUserHtmlDir = strRootDir + "html" + File.separator + "user" + File.separator
dirFile = File(strUserHtmlDir)
if dirFile.exists() == False or dirFile.isDirectory() == False:
request.setAttribute("errorMessage", u"用户缓存文件夹不存在！")
return
FileUtils.deleteQuietly(dirFile)
request.setAttribute("errorMessage", u"删除所有用户缓存完毕！")
def stat(path):
"""The Java stat implementation only returns a small subset of
the standard fields"""
f = File(path)
size = f.length()
# Sadly, if the returned length is zero, we don't really know if the file
# is zero sized or does not exist.
if size == 0 and not f.exists():
raise OSError(0, 'No such file or directory', path)
mtime = f.lastModified() / 1000.0
return (0, 0, 0, 0, 0, 0, size, mtime, mtime, 0)
def CreateFromSample():
# this is "embedded" (and updated) with each version of Nodel
sampleFile = File(
os.path.join(Nodel.getHostPath(), '.nodel', 'webui_cache',
'index-sample.xml'))
contentDir = File(_node.getRoot(), 'content')
dstFile = File(contentDir, 'index.xml')
if dstFile.exists():
return console.warn('index.xml file already exists!')
if not contentDir.exists() and not contentDir.mkdirs():
return console.error('Could not create directory %s' % contentDir)
Stream.writeFully(dstFile, Stream.readFully(sampleFile))
console.info(
'"content/index.xml" created successfully from sample. Please edit to suit your needs. Restarting node...'
)
_node.restart()
def rmdir(path):
"""rmdir(path)
Remove a directory."""
f = File(sys.getPath(path))
if not f.exists():
raise OSError(errno.ENOENT, errno.strerror(errno.ENOENT), path)
elif not f.isDirectory():
raise OSError(errno.ENOTDIR, errno.strerror(errno.ENOTDIR), path)
elif not f.delete():
raise OSError(0, "couldn't delete directory", path)
def execute(self):
if self.loginUser == None:
return ActionResult.LOGIN
accessControlService = __spring__.getBean("accessControlService")
if accessControlService.isSystemAdmin(self.loginUser) == False:
self.addActionError(u"没有管理站点配置的权限，只有超级管理员才能进行管理。")
return ActionResult.ERROR
strFile = request.getServletContext().getRealPath("/")
strFile = strFile + "html" + File.separator
strFile = URLDecoder.decode(strFile, "utf-8")
file = File(strFile)
if file.exists() == False:
file.mkdirs()
#创建学科导航
strFile = strFile + "updateinfo.htm"
file = File(strFile)
if request.getMethod() == "POST":
params = ParamUtil(request)
html = params.safeGetStringParam("updateInfo")
fw = OutputStreamWriter(FileOutputStream(file), "utf-8")
fw.flush()
fw.write(html)
fw.close()
siteIndexPartService = __spring__.getBean("siteIndexPartService")
if html == "":
siteIndexPart = siteIndexPartService.getSiteIndexPartByModuleName(
u"系统维护通知")
if siteIndexPart != None:
siteIndexPartService.deleteSiteIndexPart(siteIndexPart)
else:
siteIndexPart = siteIndexPartService.getSiteIndexPartByModuleName(
u"系统维护通知")
if siteIndexPart == None:
siteIndexPart = SiteIndexPart()
siteIndexPart.setModuleName(u"系统维护通知")
siteIndexPart.setModuleZone(1)
siteIndexPart.setModuleOrder(0)
siteIndexPart.setModuleDisplay(1)
siteIndexPart.setModuleHeight(0)
siteIndexPart.setContent(html)
siteIndexPart.setPartType(100)
siteIndexPart.setShowType(0)
siteIndexPart.setShowBorder(0)
siteIndexPartService.saveOrUpdateSiteIndexPart(siteIndexPart)
request.setAttribute("deleteCache", "1")
else:
html = CommonUtil.readFile(file.getCanonicalPath(), "UTF-8")
request.setAttribute("deleteCache", "0")
request.setAttribute("updateInfo", html)
return "/WEB-INF/ftl/admin/admin_site_update.ftl"
def test_listdir(self):
# It is hard to avoid Unicode paths on systems like OS X. Use
# relative paths from a temp CWD to work around this
with test_support.temp_cwd() as new_cwd:
unicode_path = os.path.join(".", "unicode")
self.assertIs(type(unicode_path), str)
chinese_path = os.path.join(unicode_path, u"中文")
self.assertIs(type(chinese_path), unicode)
home_path = os.path.join(chinese_path, u"首页")
os.makedirs(home_path)
with open(os.path.join(home_path, "test.txt"), "w") as test_file:
test_file.write("42\n")
# Verify works with str paths, returning Unicode as necessary
entries = os.listdir(unicode_path)
self.assertIn(u"中文", entries)
# Verify works with Unicode paths
entries = os.listdir(chinese_path)
self.assertIn(u"首页", entries)
# glob.glob builds on os.listdir; note that we don't use
# Unicode paths in the arg to glob
self.assertEqual(
glob.glob(os.path.join("unicode", "*")),
[os.path.join(u"unicode", u"中文")])
self.assertEqual(
glob.glob(os.path.join("unicode", "*", "*")),
[os.path.join(u"unicode", u"中文", u"首页")])
self.assertEqual(
glob.glob(os.path.join("unicode", "*", "*", "*")),
[os.path.join(u"unicode", u"中文", u"首页", "test.txt")])
# Now use a Unicode path as well as in the glob arg
self.assertEqual(
glob.glob(os.path.join(u"unicode", "*")),
[os.path.join(u"unicode", u"中文")])
self.assertEqual(
glob.glob(os.path.join(u"unicode", "*", "*")),
[os.path.join(u"unicode", u"中文", u"首页")])
self.assertEqual(
glob.glob(os.path.join(u"unicode", "*", "*", "*")),
[os.path.join(u"unicode", u"中文", u"首页", "test.txt")])
# Verify Java integration. But we will need to construct
# an absolute path since chdir doesn't work with Java
# (except for subprocesses, like below in test_env)
for entry in entries:
entry_path = os.path.join(new_cwd, chinese_path, entry)
f = File(entry_path)
self.assertTrue(f.exists(), "File %r (%r) should be testable for existence" % (
f, entry_path))
def EzFileDialog(initialFile, save, stage=None):
from javafx.stage import FileChooser
from java.io import File
dlg = FileChooser()
if initialFile:
f = File(initialFile)
if f.exists():
if f.isDirectory(): dlg.setInitialDirectory(f)
if f.isFile(): dlg.setInitialFileName(f.getAbsolutePath());
dlg.setTitle("Select File");
if save: return dlg.showSaveDialog(stage);
else: return dlg.showOpenDialog(stage);
def checkEnrichedFileExisted(Framework):
localScanFileName = InventoryUtils.generateScanFileName(Framework)
localScanFileSendingFolderPath = CollectorsParameters.PROBE_MGR_INVENTORY_XMLENRICHER_FILES_FOLDER + XmlEnricherConstants.SENDING_FOLDER_NAME
targetScanFile = File(localScanFileSendingFolderPath, localScanFileName)
if not targetScanFile.exists():
logger.debug('No processed scan file yet. XML-Enricher is still running.')
Framework.reportError(inventoryerrorcodes.INVENTORY_DISCOVERY_ENRICHED_SCANFILE_NOTREADY, [localScanFileName])
Framework.setStepExecutionStatus(WorkflowStepStatus.FAILURE)
else:
logger.debug('find processed scan file, goto next step')
Framework.setStepExecutionStatus(WorkflowStepStatus.SUCCESS)
def getVersions(self, storedObj):
indF = File(storedObj.getPath() + "/Version_Index.json")
versions = []
if indF.exists():
versions = JsonSimple(indF).getJsonArray()
# reverse to the order to from latest to oldest
r = JSONArray()
for s in reversed(versions):
r.add(s)
versions = r
return versions
def sanityCheckInstall(domainProperties):
beahome = domainProperties.getProperty('wls.oracle.home')
helper.printHeader('[VALIDATING] wls.oracle.home property')
if beahome is None or len(beahome)==0:
raise Exception("Required property wls.oracle.home does not exist.")
else:
homeDir = File(beahome)
if not homeDir.exists():
log.error("Property wls.oracle.home refers to an installation directory " + beahome + " that does not exist.")
sys.exit()
else:
log.debug('wls.oracle.home directory [' + str(beahome) + '] exists.')
helper.printHeader('[VALIDATING] WebLogic directory property')
wls = domainProperties.getProperty('wls.name')
wlsDir = File(str(beahome) + File.separator + str(wls))
if not wlsDir.exists():
log.error('WebLogic directory does not exist in wls.oracle.home directory, please verify wls.name and wls.oracle.home property.')
sys.exit()
else:
log.debug('WebLogic directory [' + str(wls) + '] exists in ' + beahome)
helper.printHeader('[VALIDATING] wls.domain.javahome property')
javahome = domainProperties.getProperty('wls.domain.javahome')
javahomeDir = File(str(javahome))
if not javahomeDir.exists():
log.error('JAVA_HOME directory ' + str(javahomeDir) + ' does not exist, please verify wls.domain.javahome property.')
sys.exit()
else:
log.debug('JAVA_HOME directory [' + str(javahome) + '] exists.')
validTemplates=validateTemplates(domainProperties)
if not validTemplates:
sys.exit()
def forAllMuscleExcitmentConfig(exciterList, tongueNodeList, min, cur,
increment, max, excitePath,
asciiOutputStartDir, wpOutputStartDir,
makeAsciiAlso):
if cur == exciterList.size() - 1:
for i in CLessEqualLoop(min, max, increment):
exciterList[cur].setExcitation(i)
lastExciteValueBeforeRun = exciterList[cur].getExcitation()
if not doSimResultsAlreadyExist(makeAsciiAlso, asciiOutputStartDir,
wpOutputStartDir, excitePath,
lastExciteValueBeforeRun):
origExciterLevels = []
for excitIdx in range(0, exciterList.size(
)): # save excitation levels before run() & reset()
origExciterLevels.append(
exciterList[excitIdx].getExcitation())
run(lengthPerSimulation)
waitForStop()
if Main.getRootModel().getMonitors().get(
"RunUntilSettled").isSettled(
) or hasReachedMaxDuration():
System.out.println(
"\nScript :: recording results now because tongue has settled or reached max duration.\n"
)
recordResults(tongueNodeList, asciiOutputStartDir,
wpOutputStartDir, excitePath,
lastExciteValueBeforeRun, makeAsciiAlso)
else:
System.out.println(
"\nScript :: exception detected. Will not record results.\n"
)
reset()
for excitIdx in range(0, exciterList.size(
)): # restore excitation levels after reset()
exciterList[excitIdx].setExcitation(
origExciterLevels[excitIdx])
else:
for i in CLessEqualLoop(
min, max,
increment): # for THIS excitation slider, iterate through
exciterList[cur].setExcitation(i)
if makeAsciiAlso:
asciiNextFolder = File(asciiOutputStartDir + excitePath +
str(exciterList[cur].getExcitation()))
if not asciiNextFolder.exists():
asciiNextFolder.mkdir()
forAllMuscleExcitmentConfig(
exciterList, tongueNodeList, min, cur + 1, increment, max,
excitePath + str(exciterList[cur].getExcitation()) + "/",
asciiOutputStartDir, wpOutputStartDir,
makeAsciiAlso) #recursively handle others
def updateSimsRunning():
simsFinished = []
for sim in simsRunning:
timeFile = File(myProject.getProjectMainDirectory(),
"simulations/" + sim + "/time.dat")
#print "Checking file: "+timeFile.getAbsolutePath() +", exists: "+ str(timeFile.exists())
if (timeFile.exists()):
simsFinished.append(sim)
if (len(simsFinished) > 0):
for sim in simsFinished:
simsRunning.remove(sim)
class HomesData:
def __init__(self):
pass
def __activate__(self, context):
self.velocityContext = context
self.request = context["request"]
self.response = context["response"]
self.sessionState = context["sessionState"]
self.errorMsg = ""
action = self.request.getParameter("action")
homeConfigFilePath = FascinatorHome.getPath(
"process") + "/notification/homeInstitutions.json"
self.homeConfigFile = File(homeConfigFilePath)
if self.homeConfigFile.exists() == False:
self.errorMsg = "Configuration path does not exist: %s" % homeConfigFilePath
return
if action is None or action == "list":
self.listHomes()
else:
self.errorMsg = "Invalid action."
def getErrorMsg(self):
return self.errorMsg
def listHomes(self):
term = self.request.getParameter("term")
writer = self.response.getPrintWriter(
"application/json; charset=UTF-8")
homeJsonBlock = JsonSimple(self.homeConfigFile)
writer.println("[")
count = 0
for homeObj in homeJsonBlock.getArray("institutions"):
if term is not None:
if homeObj.get("name").lower().find(term.lower()) > -1:
count = count + 1
self.printHome(writer, homeObj, count)
else:
count = count + 1
self.printHome(writer, homeObj, count)
writer.println("]")
writer.close()
def printHome(self, writer, homeObj, count):
if count > 1:
writer.print(",")
writer.println("\"%s\"" % homeObj.get("name"))
def process(self, dataSource, progressBar):
# Set the ogress bar to an Indeterminate state for now
progressBar.switchToIndeterminate()
# Return if we're not running on a windows sytem
if not PlatformUtil.isWindowsOS():
self.log(Level.INFO,
"Ignoring data source. Not running on Windows")
return IngestModule.ProcessResult.OK
# Verify we have a disk image and not a folder of files
if not isinstance(dataSource, Image):
self.log(Level.INFO, "Ignoring data source. Not an image")
return IngestModule.ProcessResult.OK
# Get disk image paths
imagePaths = dataSource.getPaths()
# Save our output to a file in the reports folder
# named based on EXE and data source ID
reportFile = File(Case.getCurrentCase().getCaseDirectory() +
"\\Reports" + "\\img_stat-" +
str(dataSource.getId()) + ".txt")
# Run the EXE, saving output to the report
# Check if the ingest is terminated and
# delete the incomplete report file
self.log(Level.INFO, "Running program on data source")
cmd = ArrayList()
cmd.add(self.pathToEXE.toString())
cmd.add(imagePaths[0])
processBuilder = ProcessBuilder(cmd)
processBuilder.redirectOutput(reportFile)
ExecUtil.execute(processBuilder,
DataSourceIngestModuleProcessTerminator(self.context))
# Add the report to the case, so it shows up in the tree
if not self.context.dataSourceIngestIsCancelled():
Case.getCurrentCase().addReport(reportFile.toString(), "Run EXE",
"img_stat output")
else:
if reportFile.exists():
if not reportFile.delete():
self.log(LEVEL.warning,
"Error deleting the incomplete report file")
return IngestModule.ProcessResult.OK
def shouldInstallScanner(scannerPlatformConfig, Framework, shell):
shouldInstall = 0
#staring to check scanner version on remote machine
isUpgradeAllowed = Boolean.parseBoolean(Framework.getParameter('IsScannerUpgradeAllowed'))
logger.debug('Parameter isUpgradeAllowed:', isUpgradeAllowed)
IsDowngradeAllowed = Boolean.parseBoolean(Framework.getParameter('IsScannerDowngradeAllowed'))
logger.debug('Parameter IsDowngradeAllowed:', IsDowngradeAllowed)
if isUpgradeAllowed and IsDowngradeAllowed:
logger.debug('Upgrade and Downgrade allowed, installing scanner in any case')
shouldInstall = 1
else:
remoteScannerVersion = Framework.getDestinationAttribute('scannerVersion')
if (remoteScannerVersion is None) or (len(str(remoteScannerVersion)) == 0) or (str(remoteScannerVersion) == 'NA'):
logger.debug('Remote scanner version is unavailable, going to execute scanner upgrade')
shouldInstall = 1
else:
logger.debug('Scanner already found on remote machine')
installerFileName = scannerPlatformConfig.getScannerExecutable()
installerVersioninstallerXmlFilePath = CollectorsParameters.PROBE_MGR_RESOURCES_DIR + 'ud_scanners' + str(File.separator) + installerFileName + '-version.xml'
logger.debug('Checking installer version in file ', installerVersioninstallerXmlFilePath)
installerXmlFile = File(installerVersioninstallerXmlFilePath)
if installerXmlFile.exists() and installerXmlFile.isFile():
installerVersion = getInstallerVersion(installerXmlFile, Framework)
logger.debug('Current scanner version ', installerVersion)
m = re.search('([\d\.]+) build ([\d]+)', remoteScannerVersion)
if m:
remoteScannerVersion = m.group(1)+'.'+m.group(2)
logger.debug('Remote scanner version ', remoteScannerVersion)
if compareVersions(installerVersion, remoteScannerVersion) > 0:
if isUpgradeAllowed:
logger.debug('Upgrade should be perfomed')
shouldInstall = 1
else:
logger.debug('Upgrade is not allowed')
elif compareVersions(installerVersion, remoteScannerVersion) < 0:
if IsDowngradeAllowed:
logger.debug('Downgrade should be perfomed')
shouldInstall = 1
else:
logger.debug('Downgrade is not allowed')
else:
logger.debug('Scanner should be installed')
shouldInstall = 1
else:
if isUpgradeAllowed:
logger.debug('Going to upgrade scanner, version file not exists:', installerVersioninstallerXmlFilePath)
shouldInstall = 1
return shouldInstall
def update_buffer_log_folder():
global __buffer_log_file__, __export_folder__, __buffer_logger__, __history_log_file__, __history_logger__
__buffer_log_file__ = __export_folder__
fi = File(__buffer_log_file__)
if not fi.exists():
if not fi.mkdirs():
print 'Error: failed to make directory: ' + __buffer_log_file__
__history_log_file__ = __buffer_log_file__ + '/History.txt'
__buffer_log_file__ += '/LogFile.txt'
if __buffer_logger__:
__buffer_logger__.close()
__buffer_logger__ = open(__buffer_log_file__, 'a')
if __history_logger__:
__history_logger__.close()
__history_logger__ = open(__history_log_file__, 'a')
def process(self, dataSource, progressBar):
# we don't know how much work there will be
progressBar.switchToIndeterminate()
# Example has only a Windows EXE, so bail if we aren't on Windows
if not PlatformUtil.isWindowsOS():
self.log(Level.INFO,
"Ignoring data source. Not running on Windows")
return IngestModule.ProcessResult.OK
# Verify we have a disk image and not a folder of files
if not isinstance(dataSource, Image):
self.log(Level.INFO, "Ignoring data source. Not an image")
return IngestModule.ProcessResult.OK
# Get disk image paths
imagePaths = dataSource.getPaths()
# We'll save our output to a file in the reports folder, named based on EXE and data source ID
reportFile = File(Case.getCurrentCase().getCaseDirectory() +
"\\Reports" + "\\img_stat-" +
str(dataSource.getId()) + ".txt")
# Run the EXE, saving output to the report
# Check if the ingest is terminated and delete the incomplete report file
# Do not add report to the case tree if the ingest is cancelled before finish.
# This can be done by using IngestJobContext.dataSourceIngestIsCancelled
# See: http://sleuthkit.org/autopsy/docs/api-docs/4.7.0/_ingest_job_context_8java.html
self.log(Level.INFO, "Running program on data source")
cmd = ArrayList()
cmd.add(self.pathToEXE.toString())
cmd.add(imagePaths[0])
processBuilder = ProcessBuilder(cmd)
processBuilder.redirectOutput(reportFile)
ExecUtil.execute(processBuilder,
DataSourceIngestModuleProcessTerminator(self.context))
# Add the report to the case, so it shows up in the tree
if not self.context.dataSourceIngestIsCancelled():
Case.getCurrentCase().addReport(reportFile.toString(), "Run EXE",
"img_stat output")
else:
if reportFile.exists():
if not reportFile.delete():
self.log(LEVEL.warning,
"Error deleting the incomplete report file")
return IngestModule.ProcessResult.OK
def validateFilestoresProperty(domainProperties):
error = 0
filestores = domainProperties.getProperty('persistent.filestores')
if not filestores is None and len(filestores)>0:
filestoreList = filestores.split(',')
for filestore in filestoreList:
helper.printHeader('[VALIDATING] filestore ' + str(filestore) + ' properties')
filestoreName = domainProperties.getProperty('persistent.filestore.' + str(filestore) + '.Name')
if filestoreName is None or len(filestoreName)==0:
error = 1
log.error('Please verify persistent.filestore.' + str(filestore) + '.Name property if it exists in configuration.')
else:
log.debug('Filestore [' + str(filestore) + '] name property [' + str(filestoreName) + '] is valid.')
filestoreTarget = domainProperties.getProperty('persistent.filestore.' + str(filestore) + '.Target')
if not filestoreTarget is None and len(filestoreTarget)>0:
servers = domainProperties.getProperty('wls.servers')
if not servers is None and len(servers)>0:
serverList = servers.split(',')
exist = 0
for server in serverList:
if server==filestoreTarget:
exist = 1
break
if not exist:
error = 1
log.error('persistent.filestore.' + str(filestore) + '.Target property refers to server that does not exist within wls.servers property.')
else:
log.debug('Filestore [' + str(filestore) + '] target property [' + str(filestoreTarget) + '] is valid.')
filestoreMigratable = domainProperties.getProperty('persistent.filestore.' + str(filestore) + '.Migratable')
if not filestoreMigratable is None and len(filestoreMigratable)>0:
if not filestoreMigratable.upper()=='TRUE' and not filestoreMigratable.upper()=='FALSE':
error = 1
log.error('The persistent.filestore.' + str(filestore) + '.Migratable property supports only [true,false, or leave blank to use default].')
else:
log.debug('Filestore [' + str(filestore) + '] migratable property [' + str(filestoreMigratable) + '] is valid.')
location = domainProperties.getProperty('persistent.filestore.' + str(filestore) + '.Location')
if not location is None and len(location)>0:
file = File(location)
if file.isAbsolute():
if not file.exists():
log.debug('[NOTE] Please make sure the user running this script has permission to create directory and file [' + str(location) + '].')
return error
def stat(path):
"""stat(path) -> stat result
Perform a stat system call on the given path.
The Java stat implementation only returns a small subset of
the standard fields: size, modification time and change time.
"""
f = File(path)
size = f.length()
# Sadly, if the returned length is zero, we don't really know if the file
# is zero sized or does not exist.
if size == 0 and not f.exists():
raise OSError(0, 'No such file or directory', path)
mtime = f.lastModified() / 1000.0
return stat_result((0, 0, 0, 0, 0, 0, size, mtime, mtime, 0))
def __get_manifest(self, source_path, from_archive):
"""
Returns the manifest object for the specified path.
The source path may be a jar, or an exploded path.
:param source_path: the source path to be checked
:param from_archive: if True, use the manifest from the archive, otherwise from the file system
:return: the manifest, or None if it is not present
:raises: IOException: if there are problems reading an existing manifest
"""
manifest = None
if string_utils.is_empty(source_path):
return manifest
source_path = self.model_context.replace_token_string(source_path)
if from_archive and deployer_utils.is_path_into_archive(source_path):
return self.archive_helper.get_manifest(source_path)
else:
if not os.path.isabs(source_path):
# if this was in archive, it has been expanded under domain home.
# or it may be a relative file intentionally placed under domain home.
source_file = File(File(self.model_context.get_domain_home()), source_path)
else:
source_file = File(source_path)
if source_file.isDirectory():
# read the manifest directly from the file system
manifest_file = File(source_file, MANIFEST_NAME)
if manifest_file.exists():
stream = None
try:
stream = FileInputStream(manifest_file)
manifest = Manifest(stream)
finally:
if stream is not None:
try:
stream.close()
except IOException:
# nothing to report
pass
else:
# read the manifest from the deployable ear/jar/war on the file system
archive = JarFile(source_file.getAbsolutePath())
manifest = archive.getManifest()
return manifest
def valueChanged(self, controller, newValue):
global __file_to_add__
newCount = int(newValue.getStringData())
if newCount != self.saveCount:
self.saveCount = newCount
try:
checkFile = File(__file_name_node__.getValue().getStringData())
checkFile = File(__data_folder__ + "/" + checkFile.getName())
__file_to_add__ = checkFile.getAbsolutePath()
if not checkFile.exists():
print "The target file :" + __file_to_add__ + " can not be found"
return
runnable = __Display_Runnable__()
runnable.run = add_dataset
Display.getDefault().asyncExec(runnable)
except:
print 'failed to add dataset ' + __file_to_add__
def _loadFontsFromFileSystem():
gEnv = GraphicsEnvironment.getLocalGraphicsEnvironment()
for fontsDir in _localFontDirectories:
for dirpath, dirnames, filenames in os.walk(fontsDir):
for filename in filenames:
if filename.lower().endswith('.ttf'):
p = os.path.join(dirpath, filename)
# Load the font from a file
fontFile = File(p)
if not fontFile.exists():
raise RuntimeError, 'Could not get font file for {0}'.format(
p)
else:
font = Font.createFont(Font.TRUETYPE_FONT, fontFile)
gEnv.registerFont(font)
def deleteDirectory(self, sPath):
# 如果sPath不以文件分隔符结尾，自动添加文件分隔符
dirFile = File(sPath)
# 如果dir对应的文件不存在，或者不是一个目录，则退出
if dirFile.exists() == False or dirFile.isDirectory() == False:
return
# 删除文件夹下的所有文件(包括子目录)
files = dirFile.listFiles()
for f in files:
# 删除子文件
if f.isFile():
f.delete()
else:
self.deleteDirectory(f.getAbsolutePath())
#/删除当前目录
dirFile.delete()
dirFile = None
