def run(self, module_info, pre=None, post=None, **kwargs):
'''Run a module
module_info - the module_info of the module to run
pre - list of PreprocessorPlugins to run before running module
post - list of PostprocessorPlugins to run after running module
*kwargs - names and values for input parameters
'''
input_map = J.make_map(kwargs)
if pre is not None:
pre = J.static_call("java/util/Arrays", "asList",
"([Ljava/lang/Object;)Ljava/util/List;",
pre)
if post is not None:
post = J.static_call("java/util/Arrays", "asList",
"([Ljava/lang/Object;)Ljava/util/List;",
post)
future = J.call(
self.o, "run", "(Lorg/scijava/module/ModuleInfo;"
"Ljava/util/List;"
"Ljava/util/List;"
"Ljava/util/Map;)"
"Ljava/util/concurrent/Future;", module_info, pre, post,
input_map)
return J.call(
self.o, "waitFor",
"(Ljava/util/concurrent/Future;)Lorg/scijava/module/Module;",
future)
def run(self, module_info,
pre = None,
post = None,
**kwargs):
'''Run a module
module_info - the module_info of the module to run
pre - list of PreprocessorPlugins to run before running module
post - list of PostprocessorPlugins to run after running module
*kwargs - names and values for input parameters
'''
input_map = J.make_map(kwargs)
if pre is not None:
pre = J.static_call("java/util/Arrays", "asList",
"([Ljava/lang/Object;)Ljava/util/List;",
pre)
if post is not None:
post = J.static_call("java/util/Arrays", "asList",
"([Ljava/lang/Object;)Ljava/util/List;",
post)
future = J.call(
self.o, "run",
"(Lorg/scijava/module/ModuleInfo;"
"Ljava/util/List;"
"Ljava/util/List;"
"Ljava/util/Map;)"
"Ljava/util/concurrent/Future;",
module_info, pre, post, input_map)
return J.call(
self.o, "waitFor",
"(Ljava/util/concurrent/Future;)Lorg/scijava/module/Module;",
future)
def run_command(self, command_class, inputs, outputs):
'''Run an imageJ command
command_class - the command's dotted class name
inputs - a dictionary of key/value pairs for the command's inputs
outputs - a dictionary of keys to be filled with the command's outputs
'''
module_index = ij2.get_module_service(self.context).getIndex()
module_infos = module_index.getS('org.scijava.command.CommandInfo')
module_info = filter(lambda x:x.getClassName() == command_class,
module_infos)[0]
svc = ij2.get_command_service(self.context)
input_map = J.make_map(**inputs)
future = svc.run(module_info.o, True, input_map.o)
module = future.get()
for key in list(outputs):
module_item = module_info.getOutput(key)
outputs[key] = module_item.getValue(module)
def run_command(self, command_class, inputs, outputs):
'''Run an imageJ command
command_class - the command's dotted class name
inputs - a dictionary of key/value pairs for the command's inputs
outputs - a dictionary of keys to be filled with the command's outputs
'''
module_index = ij2.get_module_service(self.context).getIndex()
module_infos = module_index.getS('org.scijava.command.CommandInfo')
module_info = filter(lambda x: x.getClassName() == command_class,
module_infos)[0]
svc = ij2.get_command_service(self.context)
input_map = J.make_map(**inputs)
future = svc.run(module_info.o, True, input_map.o)
module = future.get()
for key in list(outputs):
module_item = module_info.getOutput(key)
outputs[key] = module_item.getValue(module)
