def test_load_md_good():
# This uses an actual file for testing
md_path = Path('./jax_omeroutils/tests/data/OMERO_submission_form.xlsx')
md = intake.load_md_from_file(md_path, sheet_name="Example Form")
assert md['omero_user'] == 'djme'
assert md['omero_group'] == 'Research IT'
assert md['file_metadata'][0]['filename'] == 'my_image.tif'
def test_load_md_good(tmp_path):
md_path = _tmp_builder(tmp_path, 5) / 'md.tsv'
md = intake.load_md_from_file(md_path)
assert md.filename[0] == 'image0.tif'
assert md.project[0] == 'testproject'
assert md.genotype[1] == 'C57Bl6'
def test_load_md_fp_isNone():
assert intake.load_md_from_file(None) is None
def test_load_md_invalid_ftypes():
with pytest.raises(ValueError):
intake.load_md_from_file('/path/to/junk.xls.5')
def test_load_md_nofile(tmp_path):
with pytest.raises(FileNotFoundError):
intake.load_md_from_file(tmp_path / 'md.xlsx')
def test_load_md_invalid_ftypes(tmp_path):
open(tmp_path / 'md2.xls.5', 'a').close()
with pytest.raises(ValueError):
intake.load_md_from_file(tmp_path / 'md2.xls.5')