def set_image_options(self, args=None, figsize="6x6", dpi=300,
format="pdf", theme="helvetica"):
"""
Add image format options for given command line programs.
"""
from jcvi.graphics.base import ImageOptions, setup_theme
allowed_format = ("emf", "eps", "pdf", "png", "ps", \
"raw", "rgba", "svg", "svgz")
allowed_themes = ("helvetica", "palatino", "schoolbook", "mpl")
group = OptionGroup(self, "Image options")
self.add_option_group(group)
group.add_option("--figsize", default=figsize,
help="Figure size `width`x`height` in inches [default: %default]")
group.add_option("--dpi", default=dpi, type="int",
help="Physical dot density (dots per inch) [default: %default]")
group.add_option("--format", default=format, choices=allowed_format,
help="Generate image of format [default: %default]")
group.add_option("--theme", default=theme, choices=allowed_themes,
help="Font theme [default: %default]")
if args is None:
args = sys.argv[1:]
opts, args = self.parse_args(args)
assert opts.dpi > 0
assert "x" in opts.figsize
setup_theme(opts.theme)
return opts, args, ImageOptions(opts)
def set_image_options(self, args=None, figsize="6x6", dpi=300,
format="pdf", font="Helvetica", palette="deep",
style="darkgrid"):
"""
Add image format options for given command line programs.
"""
from jcvi.graphics.base import ImageOptions, setup_theme
allowed_format = ("emf", "eps", "pdf", "png", "ps", \
"raw", "rgba", "svg", "svgz")
allowed_fonts = ("Helvetica", "Palatino", "Schoolbook", "Arial")
allowed_styles = ("darkgrid", "whitegrid", "dark", "white", "ticks")
allowed_diverge = ("BrBG", "PiYG", "PRGn", "PuOr", "RdBu", \
"RdGy", "RdYlBu", "RdYlGn", "Spectral")
group = OptionGroup(self, "Image options")
self.add_option_group(group)
group.add_option("--figsize", default=figsize,
help="Figure size `width`x`height` in inches [default: %default]")
group.add_option("--dpi", default=dpi, type="int",
help="Physical dot density (dots per inch) [default: %default]")
group.add_option("--format", default=format, choices=allowed_format,
help="Generate image of format [default: %default]")
group.add_option("--font", default=font, choices=allowed_fonts,
help="Font name")
group.add_option("--style", default=style, choices=allowed_styles,
help="Axes background")
group.add_option("--diverge", default="PiYG", choices=allowed_diverge,
help="Contrasting color scheme")
group.add_option("--cmap", default="jet", help="Use this color map")
if args is None:
args = sys.argv[1:]
opts, args = self.parse_args(args)
assert opts.dpi > 0
assert "x" in opts.figsize
setup_theme(style=opts.style, font=opts.font)
return opts, args, ImageOptions(opts)
def set_image_options(self,
args=None,
figsize="6x6",
dpi=300,
format="pdf",
font="Helvetica",
palette="deep",
style="darkgrid"):
"""
Add image format options for given command line programs.
"""
from jcvi.graphics.base import ImageOptions, setup_theme
allowed_format = ("emf", "eps", "pdf", "png", "ps", \
"raw", "rgba", "svg", "svgz")
allowed_fonts = ("Helvetica", "Palatino", "Schoolbook", "Arial")
allowed_styles = ("darkgrid", "whitegrid", "dark", "white", "ticks")
allowed_diverge = ("BrBG", "PiYG", "PRGn", "PuOr", "RdBu", \
"RdGy", "RdYlBu", "RdYlGn", "Spectral")
group = OptionGroup(self, "Image options")
self.add_option_group(group)
group.add_option(
"--figsize",
default=figsize,
help="Figure size `width`x`height` in inches [default: %default]")
group.add_option(
"--dpi",
default=dpi,
type="int",
help="Physical dot density (dots per inch) [default: %default]")
group.add_option("--format",
default=format,
choices=allowed_format,
help="Generate image of format [default: %default]")
group.add_option("--font",
default=font,
choices=allowed_fonts,
help="Font name")
group.add_option("--style",
default=style,
choices=allowed_styles,
help="Axes background")
group.add_option("--diverge",
default="PiYG",
choices=allowed_diverge,
help="Contrasting color scheme")
group.add_option("--cmap", default="jet", help="Use this color map")
if args is None:
args = sys.argv[1:]
opts, args = self.parse_args(args)
assert opts.dpi > 0
assert "x" in opts.figsize
setup_theme(style=opts.style, font=opts.font)
return opts, args, ImageOptions(opts)