def test_softclip_to_first_match_uncommonMatchOpOk(self):
util = cigar.CigarUtil(0, "1M")
self.assertEquals((45, "SS" "XPNDISH"),
util._softclip_to_first_match(42, "SDNIP" "XPNDISH"))
util = cigar.CigarUtil(0, "1M")
self.assertEquals((45, "SS" "=PNDISH"),
util._softclip_to_first_match(42, "SDNIP" "=PNDISH"))
def test_softclip_to_first_match_uncommonMatchOpOk(self):
util = cigar.CigarUtil(0, "1M")
self.assertEquals((45, "SS"
"XPNDISH"),
util._softclip_to_first_match(42, "SDNIP"
"XPNDISH"))
util = cigar.CigarUtil(0, "1M")
self.assertEquals((45, "SS"
"=PNDISH"),
util._softclip_to_first_match(42, "SDNIP"
"=PNDISH"))
def test_softclip_to_first_match_posIsAdjusted(self):
util = cigar.CigarUtil(0, "1M")
self.assertEquals((45, "SS"
"MPNDISH"),
util._softclip_to_first_match(42, "SDNIP"
"MPNDISH"))
def test_softclip_to_first_noMatchesPassesThrough(self):
util = cigar.CigarUtil(0, "1M")
self.assertEquals((45, "SS"), util._softclip_to_first_match(45, "SS"))
def test_softclip_to_first_match(self):
util = cigar.CigarUtil(0, "1M")
self.assertEquals((45, "MM"), util._softclip_to_first_match(45, "MM"))
def test_softclip_to_first_match_posIsAdjusted(self):
util = cigar.CigarUtil(0, "1M")
self.assertEquals((45, "SS" "MPNDISH"),
util._softclip_to_first_match(42, "SDNIP" "MPNDISH"))
def test_softclip_to_first_noMatchesPassesThrough(self):
util = cigar.CigarUtil(0, "1M")
self.assertEquals((45, "SS"),
util._softclip_to_first_match(45, "SS"))
def test_softclip_to_first_match(self):
util = cigar.CigarUtil(0, "1M")
self.assertEquals((45, "MM"),
util._softclip_to_first_match(45, "MM"))
