def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.log = context.pipeline_logger
self.cfg = self.context.config.instrument
master_dir = self.cfg['Calibrations'].get('DirectoryForMasters', None)
self.master_dark_file = find_master(master_dir, 'Dark',
action.args.meta)
def __init__(self, action, context):
"""
Constructor
"""
BasePrimitive.__init__(self, action, context)
# to use the pipeline logger instead of the framework logger, use this:
self.logger = context.pipeline_logger
def __init__(self, action, context):
"""
Initializes the superclass and retrieves the configuration parameters or sets defaults.
"""
BasePrimitive.__init__(self, action, context)
cfg = self.config.fits2png
self.sigmas = eval(cfg.get("DEFAULT", "denoise_sigmas"))
self.sizes = cfg.get("DEFAULT", "denoise_sizes")
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.logger = context.pipeline_logger
self.action.args.atminrow = None
self.action.args.atmaxrow = None
self.action.args.atminwave = None
self.action.args.atmaxwave = None
self.action.args.at_wave = None
self.action.args.at_flux = None
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.logger = context.pipeline_logger
self.action.args.fincoeff = []
self.action.args.xsvals = None
self.action.args.av_bar_sig = []
self.action.args.st_bar_sig = []
self.action.args.av_bar_nls = []
self.action.args.st_bar_nls = []
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.logger = context.pipeline_logger
try:
import _lacosmicx
except ImportError:
self.logger.error(
"Please install lacosmicx from github.com/cmccully/lacosmicx.")
quit()
def __init__(self, action, context):
"""
Initializes the superclass and retrieves the configuration parameters or sets defaults.
"""
BasePrimitive.__init__(self, action, context)
cfg = self.config.fits2png
self.n_hist = eval(cfg.get("DEFAULT", "hist_equal_length", fallback="256 * 256"))
cut_width = cfg.getint("DEFAULT", "hist_equal_cut_width", fallback=3)
self.cut_low = cfg.getfloat("DEFAULT", "hist_equal_cut_low", fallback=cut_width)
self.cut_high = cfg.getfloat("DEFAULT", "hist_equal_cut_high", fallback=cut_width)
self.t_factor = cfg.getfloat("DEFAULT", "hist_equal_t_factor", fallback=5)
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.logger = context.pipeline_logger
self.action.args.reference_bar_separation = None
self.action.args.contbar_image_number = None
self.action.args.contbar_image = None
self.action.args.arc_number = None
self.action.args.arc_image = None
self.action.args.source_control_points = None
self.action.args.destination_control_points = None
self.action.args.bar_id = None
self.action.args.slice_id = None
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.action.args.geometry_file = None
self.action.args.x0out = None
self.action.args.wave0out = None
self.action.args.wave1out = None
self.action.args.wavegood0 = None
self.action.args.wavegood1 = None
self.action.args.waveall0 = None
self.action.args.waveall1 = None
self.action.args.wavemid = None
self.logger = context.pipeline_logger
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.log = context.pipeline_logger
self.log.info("")
self.cfg = self.context.config.instrument
# initialize values in the args for general use
self.action.args.db_entry = None
self.action.args.kd = None
self.action.args.skip = False
self.action.args.fitsfilepath = Path(
self.action.args.name).expanduser().absolute()
# initialize values in the args for use with science frames
self.action.args.background = None
self.action.args.objects = None
self.action.args.header_pointing = None
self.action.args.wcs_pointing = None
self.action.args.perr = np.nan
self.action.args.wcs = None
self.action.args.calibration_catalog = None
self.action.args.target_catalog = None
self.action.args.fwhm = None
self.action.args.ellipticity = None
self.action.args.zero_point = None
self.action.args.associated_calibrators = None
self.action.args.measured = None
self.action.args.zero_point_fit = None
self.action.args.f0 = None
# If we are reading a compressed file, use the uncompressed version of
# the name for the database
if self.action.args.fitsfilepath.suffix == '.fz':
self.action.args.fitsfile = '.'.join(
self.action.args.fitsfilepath.name.split('.')[:-1])
else:
self.action.args.fitsfile = self.action.args.fitsfilepath.name
## Connect to mongo
try:
import pymongo
self.log.debug('Connecting to mongo db')
self.action.args.mongoclient = pymongo.MongoClient(
'localhost', 27017)
self.action.args.images = self.action.args.mongoclient.vysos[
'images']
except:
self.log.error('Could not connect to mongo db')
self.action.args.mongoclient = None
self.action.args.images = None
def __init__(self, action, context):
"""
Initializes super class.
Gets paramenters from configuration.
"""
BasePrimitive.__init__(self, action, context)
fcfg = self.config.fits2png
self.output_dir = self.config.output_directory
self.extension = fcfg.get("DEFAULT",
"output_extension",
fallback=".png").strip('"').strip("'")
self.output_format = fcfg.get("DEFAULT",
"output_format",
fallback="png").strip('"').strip("'")
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.log = context.pipeline_logger
self.cfg = self.context.config.instrument
## Connect to mongo
try:
self.log.debug('Connecting to mongo db')
mongo_host = self.cfg['mongo'].get('host')
mongo_port = self.cfg['mongo'].getint('port')
mongo_db = self.cfg['mongo'].get('db')
mongo_collection = 'iqmon'
self.mongoclient = pymongo.MongoClient(mongo_host, mongo_port)
self.mongo_iqmon = self.mongoclient[mongo_db][mongo_collection]
except Exception as e:
self.log.error('Could not connect to mongo db')
self.log.error(e)
self.mongoclient = None
self.mongo_iqmon = None
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.log = context.pipeline_logger
self.log.info("")
self.cfg = self.context.config.instrument
# initialize values in the args for general use
self.action.args.fitsfilepath = Path(self.action.args.name).expanduser().absolute()
self.action.args.skip = False
self.action.args.ccddata = None
self.action.args.destination_dir = None
self.action.args.destination_file = None
# initialize values in the args for use with science frames
self.action.args.meta = {'telescope': self.cfg['Telescope'].get('name')}
self.action.args.imtype = None
self.action.args.header_pointing = None
self.action.args.background = None
self.action.args.wcs = None
self.action.args.wcs_pointing = None
self.action.args.objects = None
self.action.args.calibration_catalog = None
self.action.args.associated_calibrators = None
# If we are reading a compressed file, use the uncompressed version of
# the name for the database
if self.action.args.fitsfilepath.suffix == '.fz':
self.action.args.meta['fitsfile'] = '.'.join(self.action.args.fitsfilepath.name.split('.')[:-1])
else:
self.action.args.meta['fitsfile'] = self.action.args.fitsfilepath.name
## Connect to mongo
try:
self.log.debug('Connecting to mongo db')
mongo_host = self.cfg['mongo'].get('host')
mongo_port = self.cfg['mongo'].getint('port')
mongo_db = self.cfg['mongo'].get('db')
mongo_collection = 'iqmon'
self.mongoclient = pymongo.MongoClient(mongo_host, mongo_port)
self.mongo_iqmon = self.mongoclient[mongo_db][mongo_collection]
except Exception as e:
self.log.error('Could not connect to mongo db')
self.log.error(e)
self.mongoclient = None
self.mongo_iqmon = None
def __init__(self, action, context):
"""
Constructor
"""
BasePrimitive.__init__(self, action, context)
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.logger = context.pipeline_logger
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.logger = context.pipeline_logger
self.action.args.twkcoeff = []
def __init__(self, action, context):
"""
Initializes the super class.
"""
BasePrimitive.__init__(self, action, context)
def __init__(self, action, context):
"""
Constructor
"""
BasePrimitive.__init__(self, action, context)
self.logger = context.pipeline_logger
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.log = context.pipeline_logger
self.cfg = self.context.config.instrument
self.context = context
date_string = self.action.args.meta['UT date string']
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.log = context.pipeline_logger
self.cfg = self.context.config.instrument
def __init__(self, action, context):
"""
Constructor for BaseImg.
Invokes the super class's initialization.
"""
BasePrimitive.__init__(self, action, context)
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.logger = context.pipeline_logger
basicConfig(level=logging.ERROR)
def __init__(self, action, context):
BasePrimitive.__init__(self, action, context)
self.log = context.pipeline_logger
self.cfg = self.context.config.instrument
self.darks = context.darks
self.exptime = int(self.action.args.kd.exptime())