def test_list_softlink_dependencies():
"""Test if finding model dependencies works
"""
component_dir = kipoi.get_source("kipoi").local_path
deps = list_softlink_dependencies(os.path.join(component_dir, 'HAL'),
component_dir)
# one of these two, depending on the model source
assert (deps == {'MaxEntScan'}) or (deps == {'MaxEntScan/template',
'MaxEntScan/template/example_files',
'labranchor/example_files'})
assert list_softlink_dependencies(os.path.join(component_dir, 'deepTarget'),
component_dir) == set()
def test_list_softlink_dependencies():
"""Test if finding model dependencies works
"""
component_dir = kipoi.get_source("kipoi").local_path
assert list_softlink_dependencies(
os.path.join(component_dir, 'rbp_eclip/UPF1'),
component_dir) == {'rbp_eclip/template'}
assert list_softlink_dependencies(os.path.join(component_dir, 'HAL'),
component_dir) == {
'MaxEntScan/template',
'MaxEntScan/template/example_files',
'labranchor/example_files'
}
assert list_softlink_dependencies(
os.path.join(component_dir, 'deepTarget'), component_dir) == set()
def dependency_modified(model_name, modified_files):
"""Test if the dependency was modified
"""
def contains_any(x, file_list):
"""Test if the directory x contains any files from file_list
"""
for y in file_list:
if y.startswith(x + os.sep) or x == y:
return True
return False
# if model is from a model group, test if any of the files were modified
group_name = source.get_group_name(model_name, which='model')
if group_name is not None:
# Test if any files required by the group were modified
if contains_any(group_name, modified_files):
return True
# get all the dependency directories
dep_dirs = list_softlink_dependencies(
os.path.join(source.local_path, model_name), source.local_path)
for model_dir in [model_name] + list(dep_dirs):
if contains_any(model_dir, modified_files):
return True
return False
def dependency_modified(model_name, modified_files):
"""Test if the dependency was modified
"""
def contains_any(x, file_list):
"""Test if the directory x contains any files from file_list
"""
for y in file_list:
if y.startswith(x + os.sep) or x == y:
return True
return False
# get all the dependency directories
dep_dirs = list_softlink_dependencies(os.path.join(source.local_path,
model_name),
source.local_path)
for model_dir in [model_name] + list(dep_dirs):
if contains_any(model_dir, modified_files):
return True
return False
