def test_get(self):
self.mock_login_admin()
# check that error is raised for unknown barcode
response = self.get("/ag_edit_barcode/", {"barcode": "unknown"})
self.assertEqual(response.code, 500)
# make sure return code 400 is returned, if barcode is not given
response = self.get("/ag_edit_barcode/", {})
self.assertEqual(response.code, 400)
# check if page is rendered properly
barcode = db.get_barcodes_with_results()[0]
response = self.get("/ag_edit_barcode/", {"barcode": barcode})
self.assertEqual(response.code, 200)
details = db.getAGBarcodeDetails(barcode)
l = db.search_kits(details["ag_kit_id"])[0]
self.assertIn('name="barcode" id="barcode" value="%s"' % barcode, response.body)
for s in db.human_sites:
if details["site_sampled"] == str(s):
self.assertIn('<option value="%s" selected>%s</option>' % (str(s), str(s)), response.body)
else:
self.assertIn('<option value="%s">%s</option>' % (str(s), str(s)), response.body)
for e in db.general_sites:
if details["environment_sampled"] == str(e):
self.assertIn('<option value="%s" selected>%s</option>' % (str(e), str(e)), response.body)
else:
self.assertIn('<option value="%s">%s</option>' % (str(e), str(e)), response.body)
for p in db.getHumanParticipants(l) + db.getAnimalParticipants(l):
if details["participant_name"] == str(p):
self.assertIn('<option value="%s" selected>%s</option>' % (str(p), str(p)), response.body)
else:
self.assertIn('<option value="%s" >%s</option>' % (str(p), str(p)), response.body)
def post(self):
barcodes = db.get_barcodes_with_results()
if len(barcodes) == 0:
self.write('ERROR: No barcode results available')
return
msg = 'Sucessfully updated barcodes to results ready status.'
try:
db.mark_results_ready(barcodes)
except Exception as e:
msg = 'ERROR: ' + str(e)
self.write(msg)
def post(self):
barcodes = db.get_barcodes_with_results()
if len(barcodes) == 0:
self.write('ERROR: No barcode results available')
return
msg = 'Successfully updated barcodes to results ready status.'
try:
db.mark_results_ready(barcodes)
except Exception as e:
# TODO: refactor for clear message to the user, see issue: #126
msg = 'ERROR: ' + str(e)
self.write(msg)
def test_get_barcodes_with_results(self):
obs = db.get_barcodes_with_results()
exp = ['000023299']
self.assertEqual(obs, exp)
def test_get_barcodes_with_results(self):
obs = db.get_barcodes_with_results()
exp = ["000023299"]
self.assertEqual(obs, exp)