def test_search_barcodes(self):
obs = db.search_barcodes('000001124')
self.assertEqual(obs, ['d8592c74-7c27-2135-e040-8a80115d6401'])
ag_login_id = "d8592c74-9491-2135-e040-8a80115d6401"
names = db.ut_get_participant_names_from_ag_login_id(ag_login_id)
obs = []
for name in names:
obs.extend(db.search_barcodes(name))
self.assertTrue(ag_login_id in obs)
def test_search_barcodes(self):
obs = db.search_barcodes('000001124')
self.assertEqual(obs, ['d8592c74-7c27-2135-e040-8a80115d6401'])
ag_login_id = "d8592c74-9491-2135-e040-8a80115d6401"
names = db.ut_get_participant_names_from_ag_login_id(ag_login_id)
obs = []
for name in names:
obs.extend(db.search_barcodes(name))
self.assertTrue(ag_login_id in obs)
def test_search_barcodes(self):
obs = db.search_barcodes('000001124')
self.assertEqual(obs, ['d8592c74-7c27-2135-e040-8a80115d6401'])
obs = db.search_barcodes('REMOVED-8')
exp = ['d8592c74-7da1-2135-e040-8a80115d6401',
'00711b0a-67d6-0fed-e050-8a800c5d7570',
'd8592c74-9491-2135-e040-8a80115d6401',
'f37dc99e-2241-3a4f-e040-8a80115d1694',
'e025e238-4529-77a9-e040-8a80115d503f',
'e76468db-82ca-bf84-e040-8a80115d55dc',
'fa66366c-12f2-50aa-e040-8a800c5d6584',
'df703c65-b700-401c-e040-8a80115d46ed',
'e02a84fb-8db9-1e6a-e040-8a80115d6e16']
self.assertEqual(obs, exp)
def test_search_barcodes(self):
obs = db.search_barcodes("000001124")
self.assertEqual(obs, ["d8592c74-7c27-2135-e040-8a80115d6401"])
obs = db.search_barcodes("REMOVED-8")
exp = [
"d8592c74-7da1-2135-e040-8a80115d6401",
"00711b0a-67d6-0fed-e050-8a800c5d7570",
"d8592c74-9491-2135-e040-8a80115d6401",
"f37dc99e-2241-3a4f-e040-8a80115d1694",
"e025e238-4529-77a9-e040-8a80115d503f",
"e76468db-82ca-bf84-e040-8a80115d55dc",
"fa66366c-12f2-50aa-e040-8a800c5d6584",
"df703c65-b700-401c-e040-8a80115d46ed",
"e02a84fb-8db9-1e6a-e040-8a80115d6e16",
]
self.assertEqual(obs, exp)
def test_search_barcodes(self):
obs = db.search_barcodes('000001124')
self.assertEqual(obs, ['d8592c74-7c27-2135-e040-8a80115d6401'])
obs = db.search_barcodes('REMOVED-8')
exp = [
'd8592c74-7da1-2135-e040-8a80115d6401',
'00711b0a-67d6-0fed-e050-8a800c5d7570',
'd8592c74-9491-2135-e040-8a80115d6401',
'f37dc99e-2241-3a4f-e040-8a80115d1694',
'e025e238-4529-77a9-e040-8a80115d503f',
'e76468db-82ca-bf84-e040-8a80115d55dc',
'fa66366c-12f2-50aa-e040-8a800c5d6584',
'df703c65-b700-401c-e040-8a80115d46ed',
'e02a84fb-8db9-1e6a-e040-8a80115d6e16'
]
self.assertEqual(obs, exp)
def post(self):
term = self.get_argument('search_term')
results = {}
# search participant info
logins = db.search_participant_info(term)
results = set(logins)
# search kit info and add to resluts
logins = db.search_kits(term)
results = results | set(logins)
# search barcode and add to results
logins = db.search_barcodes(term)
results = results | set(logins)
# search handout kits
handouts = db.search_handout_kits(term)
# now take the ag_login_ids and collect the information to display
display_results = [] # list of dictionatries
for login in results:
login_display = {}
login_display['login_info'] = db.get_login_info(login)
login_display['humans'] = db.getHumanParticipants(
login)
login_display['animals'] = db.getAnimalParticipants(
login)
login_display['kit'] = db.get_kit_info_by_login(login)
for kit in login_display['kit']:
barcode_info = {}
ag_barcodes = db.get_barcode_info_by_kit_id(
kit['ag_kit_id'])
barcode_info = {}
for ag_barcode in ag_barcodes:
barcode_info[ag_barcode['barcode']] = {}
barcode_info[ag_barcode['barcode']]['ag_info'] = ag_barcode
lab_barcode_info = db.get_barcode_details(
ag_barcode['barcode'])
plate = db.get_plate_for_barcode(
ag_barcode['barcode'])
barcode_info[ag_barcode['barcode']]['barcode_info'] = \
lab_barcode_info
barcode_info[ag_barcode['barcode']]['plate'] = plate
kit['barcode_info'] = barcode_info
display_results.append(login_display)
# now render the page
self.render("ag_search.html",
results=display_results,
handouts=handouts,
currentuser=self.current_user)
def test_post_barcode(self):
self.mock_login_admin()
search_term = '000028538'
response = self.post('/ag_search/', {'search_term': search_term})
self.assertEqual(response.code, 200)
for barcode in db.search_barcodes(search_term):
kit_id = db.get_kit_info_by_login(barcode)[0]['ag_kit_id']
for sample in db.get_barcode_info_by_kit_id(kit_id):
for field in sample:
if sample[field] is not None:
if (field == 'ag_kit_id') or (
field == 'ag_kit_barcode_id'):
self.assertNotIn(sample[field], response.body)
else:
self.assertIn(sample[field], response.body)
def test_post_barcode(self):
self.mock_login_admin()
search_term = '000028538'
response = self.post('/ag_search/', {'search_term': search_term})
self.assertEqual(response.code, 200)
for barcode in db.search_barcodes(search_term):
kit_id = db.get_kit_info_by_login(barcode)[0]['ag_kit_id']
for sample in db.get_barcode_info_by_kit_id(kit_id):
for field in sample:
if sample[field] is not None:
if (field == 'ag_kit_id') or \
(field == 'ag_kit_barcode_id'):
self.assertNotIn(sample[field], response.body)
else:
exp = xhtml_escape_recursive(sample[field])
self.assertIn(str(exp), response.body)
def post(self):
term = self.get_argument('search_term')
results = {}
# search participant info
logins = db.search_participant_info(term)
results = set(logins)
# search kit info and add to resluts
logins = db.search_kits(term)
results = results | set(logins)
# search barcode and add to results
logins = db.search_barcodes(term)
results = results | set(logins)
# search handout kits
handouts = db.search_handout_kits(term)
# now take the ag_login_ids and collect the information to display
display_results = [] # list of dictionatries
for login in results:
login_display = {}
login_display['login_info'] = db.get_login_info(login)
login_display['humans'] = db.getHumanParticipants(
login)
login_display['animals'] = db.getAnimalParticipants(
login)
login_display['kit'] = db.get_kit_info_by_login(login)
for kit in login_display['kit']:
barcode_info = {}
ag_barcodes = db.get_barcode_info_by_kit_id(
kit['ag_kit_id'])
barcode_info = {}
for ag_barcode in ag_barcodes:
barcode_info[ag_barcode['barcode']] = {}
barcode_info[ag_barcode['barcode']]['ag_info'] = ag_barcode
lab_barcode_info = db.get_barcode_details(
ag_barcode['barcode'])
plate = db.get_plate_for_barcode(
ag_barcode['barcode'])
barcode_info[ag_barcode['barcode']]['barcode_info'] = \
lab_barcode_info
barcode_info[ag_barcode['barcode']]['plate'] = plate
kit['barcode_info'] = barcode_info
display_results.append(login_display)
# now render the page
self.render("ag_search.html", results=display_results,
handouts=handouts, currentuser=self.current_user)
