def test_7(self):
testArgs = [
'None', '-F', self.fasta, '-k', '2', '-w', '10', '-s', '10', '-M',
'max'
]
answer1 = \
'''test1 0 10 2
test1 10 18 2
test2 0 10 2
test2 10 13 1
'''
with patch('sys.argv', testArgs):
with patch('sys.stdout', StringIO()):
komplexity.main()
self.assertMultiLineEqual(answer1, sys.stdout.getvalue())
def test_2(self):
testArgs = ['None', '-F', self.fasta, '-k', '3', '-w', '6', '-s', '5']
answer1 = \
'''test1 0 5 4
test1 5 10 4
test1 10 15 4
test1 15 18 2.50
test2 0 5 4
test2 5 10 4
test2 10 13 2.50
'''
with patch('sys.argv', testArgs):
with patch('sys.stdout', StringIO()):
komplexity.main()
self.assertMultiLineEqual(answer1, sys.stdout.getvalue())
def test_6(self):
testArgs = [
'None', '-F', self.fasta, '-k', '3', '-w', '6', '-s', '5', '-A',
'sum', '-M', 'duplicate'
]
answer1 = \
'''test1 0 5 0
test1 5 10 0
test1 10 15 0
test1 15 18 0
test2 0 5 0
test2 5 10 0
test2 10 13 0
'''
with patch('sys.argv', testArgs):
with patch('sys.stdout', StringIO()):
komplexity.main()
self.assertMultiLineEqual(answer1, sys.stdout.getvalue())