def test_dna_to_rvd(self):
"""
Translate DNA to RVD pairs.
"""
expected = 'NI NG NI HD HD NN NG HD NG NG NI NG NG NG NG'
rvd = pfusx.dna_to_rvd('ATACCGTCTTATTTT')
self.assertEqual(rvd, expected)
def test_dna_to_rvd_allow_unspecified_purine(self):
"""
Translate DNA to RVD pairs with unspecified purines.
"""
expected = 'NI NG NI HD HD NN NG HD NG NG NI NG NG NG NG'
rvd = pfusx.dna_to_rvd('ATACCRTCTTATTTT')
self.assertEqual(rvd, expected)
def test_dna_to_rvd(self):
"""
Translate DNA to RVD pairs.
"""
expected = 'NI NG NI HD HD NN NG HD NG NG NI NG NG NG NG'
rvd = pfusx.dna_to_rvd('ATACCGTCTTATTTT')
self.assertEqual(rvd, expected)
def test_dna_to_rvd_allow_unspecified_purine(self):
"""
Translate DNA to RVD pairs with unspecified purines.
"""
expected = 'NI NG NI HD HD NN NG HD NG NG NI NG NG NG NG'
rvd = pfusx.dna_to_rvd('ATACCRTCTTATTTT')
self.assertEqual(rvd, expected)
def test_dna_to_rvd_invalid_character(self):
"""
Translate DNA to RCD pairs, minus invalid characters.
"""
with self.assertRaises(ValueError):
pfusx.dna_to_rvd('AXACCGTCTTATTTT')
def test_dna_to_rvd_disallow_unspecified_pyrimidines(self):
"""
Translate DNA to RVD pairs only with specified pyrimidines.
"""
with self.assertRaises(ValueError):
pfusx.dna_to_rvd('AYACCGTCTTATTTT')
def test_dna_to_rvd_invalid_character(self):
"""
Translate DNA to RCD pairs, minus invalid characters.
"""
with self.assertRaises(ValueError):
pfusx.dna_to_rvd('AXACCGTCTTATTTT')
def test_dna_to_rvd_disallow_unspecified_pyrimidines(self):
"""
Translate DNA to RVD pairs only with specified pyrimidines.
"""
with self.assertRaises(ValueError):
pfusx.dna_to_rvd('AYACCGTCTTATTTT')