def epoch_exec_acc(model, batch_size, sql_data, table_data, db_path):
engine = DBEngine(db_path)
model.eval()
perm = list(range(len(sql_data)))
tot_acc_num = 0.0
for st in tqdm(range(len(sql_data) // batch_size + 1)):
ed = (st + 1) * batch_size if (st + 1) * batch_size < len(
perm) else len(perm)
st = st * batch_size
q_seq, gt_sel_num, col_seq, col_num, ans_seq, gt_cond_seq, raw_data = \
to_batch_seq(sql_data, table_data, perm, st, ed, ret_vis_data=True)
raw_q_seq = [x[0] for x in raw_data]
raw_col_seq = [x[1] for x in raw_data]
query_gt, table_ids = to_batch_query(sql_data, perm, st, ed)
gt_sel_seq = [x[2] for x in ans_seq]
score = model.forward(q_seq, col_seq, col_num, gt_sel=gt_sel_seq)
pred_queries = model.gen_query(score, q_seq, col_seq, raw_q_seq,
raw_col_seq)
for idx, (sql_gt, sql_pred,
tid) in enumerate(zip(query_gt, pred_queries, table_ids)):
ret_gt = engine.execute(tid, sql_gt['sel'], sql_gt['agg'],
sql_gt['conds'])
try:
ret_pred = engine.execute(tid, sql_pred['sel'],
sql_pred['agg'], sql_pred['conds'])
except:
ret_pred = None
tot_acc_num += (ret_gt == ret_pred)
return tot_acc_num / len(sql_data)
def eval_one_qelos(db_file, pred_file, source_file):
engine = DBEngine(db_file)
exact_match = []
with open(source_file) as fs, open(pred_file) as fp:
grades = []
for ls, lp in tqdm(zip(fs, fp), total=count_lines(source_file)):
eg = json.loads(ls)
ep = json.loads(lp)
qg = Query.from_dict(eg['sql'])
gold = engine.execute_query(eg['table_id'], qg, lower=True)
qp = None
try:
qp = Query.from_dict(ep)
pred = engine.execute_query(eg['table_id'], qp, lower=True)
except Exception as e:
pred = repr(e)
correct = pred == gold
match = qp == qg
grades.append(correct)
exact_match.append(match)
result = {
'ex_accuracy': sum(grades) / len(grades),
'lf_accuracy': sum(exact_match) / len(exact_match),
}
return result
def hello():
pred_json = json.loads(request.args.get('pred'))
gold_json = json.loads(request.args.get('gold'))
dataset = request.args.get('dataset')
engine = DBEngine(os.path.join(DATABASE_PATH, "{}.db".format(dataset)))
exact_match = []
grades = []
for lp, ls in tqdm(zip(pred_json, gold_json), total=len(gold_json)):
eg = ls
ep = lp
qg = Query.from_dict(eg['sql'])
gold = engine.execute_query(eg['table_id'], qg, lower=True)
pred = ep['error']
qp = None
if not ep['error']:
try:
qp = Query.from_dict(ep['query'])
pred = engine.execute_query(eg['table_id'], qp, lower=True)
except Exception as e:
pred = repr(e)
correct = pred == gold
match = qp == qg
grades.append(correct)
exact_match.append(match)
ex_accuracy = sum(grades) / len(grades)
lf_accuracy = sum(exact_match) / len(exact_match)
return json.dumps({"ex_accuracy": ex_accuracy, "lf_accuracy": lf_accuracy})
def epoch_reinforce_train(model, optimizer, batch_size, sql_data, table_data,
db_path):
engine = DBEngine(db_path)
model.train()
perm = np.random.permutation(len(sql_data))
cum_reward = 0.0
st = 0
while st < len(sql_data):
ed = st + batch_size if st + batch_size < len(perm) else len(perm)
q_seq, col_seq, col_num, ans_seq, query_seq, gt_cond_seq, raw_data = \
to_batch_seq(sql_data, table_data, perm, st, ed, ret_vis_data=True)
gt_where_seq = model.generate_gt_where_seq(q_seq, col_seq, query_seq)
raw_q_seq = [x[0] for x in raw_data]
raw_col_seq = [x[1] for x in raw_data]
query_gt, table_ids = to_batch_query(sql_data, perm, st, ed)
gt_sel_seq = [x[1] for x in ans_seq]
score = model.forward(q_seq,
col_seq,
col_num, (True, True, True),
reinforce=True,
gt_sel=gt_sel_seq)
pred_queries = model.gen_query(score,
q_seq,
col_seq,
raw_q_seq,
raw_col_seq, (True, True, True),
reinforce=True)
query_gt, table_ids = to_batch_query(sql_data, perm, st, ed)
rewards = []
for idx, (sql_gt, sql_pred,
tid) in enumerate(zip(query_gt, pred_queries, table_ids)):
ret_gt = engine.execute(tid, sql_gt['sel'], sql_gt['agg'],
sql_gt['conds'])
try:
ret_pred = engine.execute(tid, sql_pred['sel'],
sql_pred['agg'], sql_pred['conds'])
except:
ret_pred = None
if ret_pred is None:
rewards.append(-2)
elif ret_pred != ret_gt:
rewards.append(-1)
else:
rewards.append(1)
cum_reward += (sum(rewards))
optimizer.zero_grad()
model.reinforce_backward(score, rewards)
optimizer.step()
st = ed
return cum_reward / len(sql_data)
def main(anno_file_name, col_headers, raw_args=None, verbose=True):
parser = argparse.ArgumentParser(description='evaluate.py')
opts.translate_opts(parser)
opt = parser.parse_args(raw_args)
torch.cuda.set_device(opt.gpu)
opt.db_file = os.path.join(opt.data_path, '{}.db'.format(opt.split))
opt.pre_word_vecs = os.path.join(opt.data_path, 'embedding')
dummy_parser = argparse.ArgumentParser(description='train.py')
opts.model_opts(dummy_parser)
opts.train_opts(dummy_parser)
dummy_opt = dummy_parser.parse_known_args([])[0]
opt.anno = anno_file_name
engine = DBEngine(opt.db_file)
js_list = table.IO.read_anno_json(opt.anno)
prev_best = (None, None)
sql_query = []
for fn_model in glob.glob(opt.model_path):
opt.model = fn_model
translator = Translator(opt, dummy_opt.__dict__)
data = table.IO.TableDataset(js_list, translator.fields, None, False)
test_data = table.IO.OrderedIterator(dataset=data,
device=opt.gpu,
batch_size=opt.batch_size,
train=False,
sort=True,
sort_within_batch=False)
# inference
r_list = []
for batch in test_data:
r_list += translator.translate(batch)
r_list.sort(key=lambda x: x.idx)
pred = r_list[-1]
sql_pred = {
'agg': pred.agg,
'sel': pred.sel,
'conds': pred.recover_cond_to_gloss(js_list[-1])
}
if verbose:
print('\n sql_pred: ', sql_pred, '\n')
print('\n col_headers: ', col_headers, '\n')
sql_query = Query(sql_pred['sel'], sql_pred['agg'], sql_pred['conds'])
try:
ans_pred = engine.execute_query(js_list[-1]['table_id'],
Query.from_dict(sql_pred),
lower=True,
verbose=verbose)
except Exception as e:
ans_pred = None
return sql_query.get_complete_query(col_headers), ans_pred
def epoch_acc(model, batch_size, sql_data, table_data, db_path):
engine = DBEngine(db_path)
model.eval()
perm = list(range(len(sql_data)))
badcase = 0
one_acc_num, tot_acc_num, ex_acc_num = 0.0, 0.0, 0.0
for st in tqdm(range(len(sql_data) // batch_size + 1)):
ed = (st + 1) * batch_size if (st + 1) * batch_size < len(
perm) else len(perm)
st = st * batch_size
q_seq, gt_sel_num, col_seq, col_num, ans_seq, gt_cond_seq, raw_data = \
to_batch_seq(sql_data, table_data, perm, st, ed, ret_vis_data=True)
# q_seq: char-based sequence of question
# gt_sel_num: number of selected columns and aggregation functions, new added field
# col_seq: char-based column name
# col_num: number of headers in one table
# ans_seq: (sel, number of conds, sel list in conds, op list in conds)
# gt_cond_seq: ground truth of conditions
# raw_data: ori question, headers, sql
query_gt, table_ids = to_batch_query(sql_data, perm, st, ed)
# query_gt: ground truth of sql, data['sql'], containing sel, agg, conds:{sel, op, value}
raw_q_seq = [x[0] for x in raw_data] # original question
try:
score = model.forward(q_seq, col_seq, col_num)
pred_queries = model.gen_query(score, q_seq, col_seq, raw_q_seq)
# generate predicted format
one_err, tot_err = model.check_acc(raw_data, pred_queries,
query_gt)
except:
badcase += 1
print('badcase', badcase)
continue
one_acc_num += (ed - st - one_err)
tot_acc_num += (ed - st - tot_err)
# Execution Accuracy
for sql_gt, sql_pred, tid in zip(query_gt, pred_queries, table_ids):
ret_gt = engine.execute(tid, sql_gt['sel'], sql_gt['agg'],
sql_gt['conds'], sql_gt['cond_conn_op'])
try:
ret_pred = engine.execute(tid, sql_pred['sel'],
sql_pred['agg'], sql_pred['conds'],
sql_pred['cond_conn_op'])
except:
ret_pred = None
ex_acc_num += (ret_gt == ret_pred)
return one_acc_num / len(sql_data), tot_acc_num / len(
sql_data), ex_acc_num / len(sql_data)
def main():
dummy_parser = argparse.ArgumentParser(description='train.py')
opts.model_opts(dummy_parser)
opts.train_opts(dummy_parser)
dummy_opt = dummy_parser.parse_known_args([])[0]
engine = DBEngine(opt.db_file)
with codecs.open(opt.source_file, "r", "utf-8") as corpus_file:
sql_list = [json.loads(line)['sql'] for line in corpus_file]
js_list = table.IO.read_anno_json(opt.anno)
prev_best = (None, None)
for fn_model in glob.glob(opt.model_path):
opt.model = fn_model
translator = Translator(opt, dummy_opt.__dict__)
data = table.IO.TableDataset(js_list, translator.fields, None, False)
test_data = table.IO.OrderedIterator(dataset=data,
device=opt.gpu,
batch_size=opt.batch_size,
train=False,
sort=True,
sort_within_batch=False)
# inference
if opt.beam_search:
print('Using execution guidance for inference.')
r_list = []
for batch in test_data:
r_list += translator.translate(batch, js_list, sql_list)
r_list.sort(key=lambda x: x.idx)
assert len(r_list) == len(
js_list), 'len(r_list) != len(js_list): {} != {}'.format(
len(r_list), len(js_list))
# evaluation
for pred, gold, sql_gold in zip(r_list, js_list, sql_list):
pred.eval(gold, sql_gold, engine)
print('Results:')
for metric_name in ('all', 'exe'):
c_correct = sum((x.correct[metric_name] for x in r_list))
print('{}: {} / {} = {:.2%}'.format(metric_name, c_correct,
len(r_list),
c_correct / len(r_list)))
if metric_name == 'all' and (prev_best[0] is None
or c_correct > prev_best[1]):
prev_best = (fn_model, c_correct)
if (opt.split == 'dev') and (prev_best[0] is not None):
with codecs.open(os.path.join(opt.data_path, 'dev_best.txt'),
'w',
encoding='utf-8') as f_out:
f_out.write('{}\n'.format(prev_best[0]))
def main(argv):
del argv # Unused.
db_file = join(FLAGS.data_root, FLAGS.db_file)
parsed_std_sql_file = join(FLAGS.data_root, FLAGS.parsed_std_sql_file)
parsed_pred_sql_file = join(FLAGS.data_root, FLAGS.parsed_pred_sql_file)
engine = DBEngine(db_file)
exact_match = []
with open(parsed_std_sql_file) as fs, open(parsed_pred_sql_file) as fp:
grades = []
for ls, lp in tqdm(zip(fs, fp),
total=count_lines(parsed_std_sql_file)):
eg = json.loads(ls)
ep = json.loads(lp)
try:
qg = Query.from_dict(eg['sql'])
gold = engine.execute_query(eg['table_id'], qg, lower=True)
except Exception as e:
gold = repr(e)
#pred = ep['error']
qp = None
#if not ep['error']:
if True:
try:
qp = Query.from_dict(ep['sql'])
pred = engine.execute_query(eg['table_id'], qp, lower=True)
except Exception as e:
pred = repr(e)
correct = pred == gold
match = qp == qg
if pred == gold and qp != qg:
print(qp)
print(qg)
grades.append(correct)
exact_match.append(match)
print(
json.dumps(
{
'ex_accuracy': sum(grades) / len(grades),
'lf_accuracy': sum(exact_match) / len(exact_match),
},
indent=2))
def epoch_acc(model, batch_size, sql_data, table_data, db_path, db_content):
engine = DBEngine(db_path)
model.eval()
perm = list(range(len(sql_data)))
badcase = 0
one_acc_num, tot_acc_num, ex_acc_num = 0.0, 0.0, 0.0
for st in tqdm(range(len(sql_data) // batch_size + 1)):
ed = (st + 1) * batch_size if (st + 1) * batch_size < len(
perm) else len(perm)
st = st * batch_size
q_seq, gt_sel_num, col_seq, col_num, ans_seq, gt_cond_seq, q_type, col_type,\
raw_data = to_batch_seq(sql_data, table_data, perm, st, ed, db_content, ret_vis_data=True)
print("q_seq:{}".format(len(q_seq)))
raw_q_seq = [x[0] for x in raw_data]
#raw_col_seq = [x[1] for x in raw_data]
query_gt, table_ids = to_batch_query(sql_data, perm, st, ed)
#gt_sel_seq = [x[1] for x in ans_seq]
#try:
score = model.forward(q_seq, col_seq, col_num, q_type, col_type)
pred_queries = model.gen_query(score, q_seq, col_seq, raw_q_seq)
one_err, tot_err = model.check_acc(raw_data, pred_queries, query_gt)
#except:
# badcase += 1
# print 'badcase', badcase
# continue
one_acc_num += (ed - st - one_err)
tot_acc_num += (ed - st - tot_err)
# Execution Accuracy
for sql_gt, sql_pred, tid in zip(query_gt, pred_queries, table_ids):
ret_gt = engine.execute(tid, sql_gt['sel'], sql_gt['agg'],
sql_gt['conds'], sql_gt['cond_conn_op'])
try:
ret_pred = engine.execute(tid, sql_pred['sel'],
sql_pred['agg'], sql_pred['conds'],
sql_pred['cond_conn_op'])
except:
ret_pred = None
ex_acc_num += (ret_gt == ret_pred)
return one_acc_num / len(sql_data), tot_acc_num / len(
sql_data), ex_acc_num / len(sql_data)
def epoch_exec_acc(model, batch_size, sql_data, table_data, db_path):
engine = DBEngine(db_path)
print 'exec acc'
model.eval()
perm = list(range(len(sql_data)))
tot_acc_num = 0.0
acc_of_log = 0.0
st = 0
while st < len(sql_data):
ed = st+batch_size if st+batch_size < len(perm) else len(perm)
q_seq, col_seq, col_num, ans_seq, query_seq, gt_cond_seq, raw_data = \
to_batch_seq(sql_data, table_data, perm, st, ed, ret_vis_data=True)
raw_q_seq = [x[0] for x in raw_data]
raw_col_seq = [x[1] for x in raw_data]
model.generate_gt_sel_seq(q_seq, col_seq, query_seq)
gt_where_seq = model.generate_gt_where_seq(q_seq, col_seq, query_seq)
query_gt, table_ids = to_batch_query(sql_data, perm, st, ed)
gt_sel_seq = [x[1] for x in ans_seq]
# print 'gt_sel_seq', gt_sel_seq
score = model.forward(q_seq, col_seq, col_num,
(True, True, True), gt_sel=gt_sel_seq)
pred_queries = model.gen_query(score, q_seq, col_seq,
raw_q_seq, raw_col_seq, (True, True, True))
for idx, (sql_gt, sql_pred, tid) in enumerate(
zip(query_gt, pred_queries, table_ids)):
ret_gt = engine.execute(tid,
sql_gt['sel'], sql_gt['agg'], sql_gt['conds'])
try:
ret_pred = engine.execute(tid,
sql_pred['sel'], sql_pred['agg'], sql_pred['conds'])
except:
ret_pred = None
tot_acc_num += (ret_gt == ret_pred)
st = ed
return tot_acc_num / len(sql_data)
def predict_test(model, batch_size, sql_data, table_data, db_path,
output_path):
engine = DBEngine(db_path)
model.eval()
perm = list(range(len(sql_data)))
fw = open(output_path, 'w')
for st in tqdm(range(len(sql_data) // batch_size + 1)):
ed = (st + 1) * batch_size if (st + 1) * batch_size < len(
perm) else len(perm)
st = st * batch_size
q_seq, col_seq, col_num, raw_q_seq, table_ids = to_batch_seq_test(
sql_data, table_data, perm, st, ed)
score = model.forward(q_seq, col_seq, col_num)
sql_preds = model.gen_query(score, q_seq, col_seq, raw_q_seq)
for sql_pred in sql_preds:
fw.writelines(
json.dumps(sql_pred, ensure_ascii=False).encode('utf-8') +
'\n')
fw.close()
import json
from tqdm import tqdm
import os
import sys
sys.path.append(os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
from lib.query import Query
from lib.dbengine import DBEngine
import pytorch
if __name__ == '__main__':
for split in ['train', 'dev', 'test']:
print('checking {}'.format(split))
engine = DBEngine('data/{}.db'.format(split))
n_lines = 0
with open('data/{}.jsonl'.format(split)) as f:
for l in f:
n_lines += 1
with open('data/{}.jsonl'.format(split)) as f:
for l in tqdm(f, total=n_lines):
d = json.loads(l)
query = Query.from_dict(d['sql'])
# make sure it's executable
result = engine.execute_query(d['table_id'], query)
if result:
for a, b, c in d['sql']['conds']:
if str(c).lower() not in d['question'].lower():
raise Exception(
'Could not find condition {} in question {} for query {}'
.format(c, d['question'], query))
else:
import pickle
import json
if __name__ == '__main__':
parser = ArgumentParser()
parser.add_argument('source_file', help='source file for the prediction')
parser.add_argument('db_file', help='source database for the prediction')
parser.add_argument('pred_file', help='predictions by the model')
parser.add_argument('--ordered', action='store_true', help='whether the exact match should consider the order of conditions')
parser.add_argument('--topk', type=int, default=3, help='k of top_k')
args = parser.parse_args()
engine = DBEngine(args.db_file)
temp = []
with open(args.source_file) as fs, open(args.pred_file) as fp:
grades = []
exact_match = []
for ls, lp in tqdm(zip(fs, fp), total=count_lines(args.source_file)):
eg = json.loads(ls)
qg = Query.from_dict(eg['sql'], ordered=args.ordered)
gold = engine.execute_query(eg['table_id'], qg, lower=True)
pred_topk = []
qp_topk = []
def translate(self, batch, js_list=[], sql_list=[]):
q, q_len = batch.src
tbl, tbl_len = batch.tbl
ent, tbl_split, tbl_mask = batch.ent, batch.tbl_split, batch.tbl_mask
# encoding
q_enc, q_all, tbl_enc, q_ht, batch_size = self.model.enc(
q, q_len, ent, tbl, tbl_len, tbl_split, tbl_mask)
# (1) decoding
agg_pred = cpu_vector(argmax(self.model.agg_classifier(q_ht).data))
sel_pred = cpu_vector(
argmax(self.model.sel_match(q_ht, tbl_enc, tbl_mask).data))
lay_pred = argmax(self.model.lay_classifier(q_ht).data)
engine = DBEngine(self.opt.db_file)
indices = cpu_vector(batch.indices.data)
# get layout op tokens
op_batch_list = []
op_idx_batch_list = []
if self.opt.gold_layout:
lay_pred = batch.lay.data
cond_op, cond_op_len = batch.cond_op
cond_op_len_list = cond_op_len.view(-1).tolist()
for i, len_it in enumerate(cond_op_len_list):
if len_it == 0:
op_idx_batch_list.append([])
op_batch_list.append([])
else:
idx_list = cond_op.data[0:len_it,
i].contiguous().view(-1).tolist()
op_idx_batch_list.append([
int(self.fields['cond_op'].vocab.itos[it])
for it in idx_list
])
op_batch_list.append(idx_list)
else:
lay_batch_list = lay_pred.view(-1).tolist()
for lay_it in lay_batch_list:
tk_list = self.fields['lay'].vocab.itos[lay_it].split(' ')
if (len(tk_list) == 0) or (tk_list[0] == ''):
op_idx_batch_list.append([])
op_batch_list.append([])
else:
op_idx_batch_list.append(
[int(op_str) for op_str in tk_list])
op_batch_list.append([
self.fields['cond_op'].vocab.stoi[op_str]
for op_str in tk_list
])
# -> (num_cond, batch)
cond_op = v_eval(
add_pad(
op_batch_list,
self.fields['cond_op'].vocab.stoi[table.IO.PAD_WORD]).t())
cond_op_len = torch.LongTensor([len(it) for it in op_batch_list])
# emb_op -> (num_cond, batch, emb_size)
if self.model.opt.layout_encode == 'rnn':
emb_op = table.Models.encode_unsorted_batch(
self.model.lay_encoder, cond_op, cond_op_len.clamp(min=1))
else:
emb_op = self.model.cond_embedding(cond_op)
# (2) decoding
self.model.cond_decoder.attn.applyMaskBySeqBatch(q)
cond_state = self.model.cond_decoder.init_decoder_state(q_all, q_enc)
cond_col_list, cond_span_l_list, cond_span_r_list = [], [], []
t = 0
need_back_track = [False] * batch_size
for emb_op_t in emb_op:
t += 1
emb_op_t = emb_op_t.unsqueeze(0)
cond_context, cond_state, _ = self.model.cond_decoder(
emb_op_t, q_all, cond_state)
# cond col -> (1, batch)
cond_col_all = self.model.cond_col_match(cond_context, tbl_enc,
tbl_mask).data
cond_col = argmax(cond_col_all)
# add to this after beam search: cond_col_list.append(cpu_vector(cond_col))
# emb_col
batch_index = torch.LongTensor(
range(batch_size)).unsqueeze_(0).cuda().expand(
cond_col.size(0), cond_col.size(1))
emb_col = tbl_enc[cond_col, batch_index, :]
cond_context, cond_state, _ = self.model.cond_decoder(
emb_col, q_all, cond_state)
# cond span
q_mask = v_eval(
q.data.eq(self.model.pad_word_index).transpose(0, 1))
cond_span_l_batch_all = self.model.cond_span_l_match(
cond_context, q_all, q_mask).data
cond_span_l_batch = argmax(cond_span_l_batch_all)
# add to this after beam search: cond_span_l_list.append(cpu_vector(cond_span_l))
# emb_span_l: (1, batch, hidden_size)
emb_span_l = q_all[cond_span_l_batch, batch_index, :]
cond_span_r_batch = argmax(
self.model.cond_span_r_match(cond_context, q_all, q_mask,
emb_span_l).data)
# add to this after beam search: cond_span_r_list.append(cpu_vector(cond_span_r))
if self.opt.beam_search:
# for now just go through the next col in cond
k = min(self.opt.beam_size, cond_col_all.size()[2])
top_col_idx = cond_col_all.topk(k)[1]
for b in range(batch_size):
if t > len(op_idx_batch_list[b]) or need_back_track[b]:
continue
idx = indices[b]
agg = agg_pred[b]
sel = sel_pred[b]
cond = []
for i in range(t):
op = op_idx_batch_list[b][i]
if i < t - 1:
col = cond_col_list[i][b]
span_l = cond_span_l_list[i][b]
span_r = cond_span_r_list[i][b]
else:
col = cond_col[0, b]
span_l = cond_span_l_batch[0, b]
span_r = cond_span_r_batch[0, b]
cond.append((col, op, (span_l, span_r)))
pred = ParseResult(idx, agg, sel, cond)
pred.eval(js_list[idx], sql_list[idx], engine)
n_test = 0
while pred.exception_raised and n_test < top_col_idx.size(
)[2] - 1:
n_test += 1
if n_test > self.opt.beam_size:
need_back_track[b] = True
break
cond_col[0, b] = top_col_idx[0, b, n_test]
emb_col = tbl_enc[cond_col, batch_index, :]
cond_context, cond_state, _ = self.model.cond_decoder(
emb_col, q_all, cond_state)
# cond span
q_mask = v_eval(
q.data.eq(self.model.pad_word_index).transpose(
0, 1))
cond_span_l_batch_all = self.model.cond_span_l_match(
cond_context, q_all, q_mask).data
cond_span_l_batch = argmax(cond_span_l_batch_all)
# emb_span_l: (1, batch, hidden_size)
emb_span_l = q_all[cond_span_l_batch, batch_index, :]
cond_span_r_batch = argmax(
self.model.cond_span_r_match(
cond_context, q_all, q_mask, emb_span_l).data)
# run the new query over database
col = cond_col[0, b]
span_l = cond_span_l_batch[0, b]
span_r = cond_span_r_batch[0, b]
cond.pop()
cond.append((col, op, (span_l, span_r)))
pred = ParseResult(idx, agg, sel, cond)
pred.eval(js_list[idx], sql_list[idx], engine)
cond_col_list.append(cpu_vector(cond_col))
cond_span_l_list.append(cpu_vector(cond_span_l_batch))
cond_span_r_list.append(cpu_vector(cond_span_r_batch))
# emb_span_r: (1, batch, hidden_size)
emb_span_r = q_all[cond_span_r_batch, batch_index, :]
emb_span = self.model.span_merge(
torch.cat([emb_span_l, emb_span_r], 2))
cond_context, cond_state, _ = self.model.cond_decoder(
emb_span, q_all, cond_state)
# (3) recover output
r_list = []
for b in range(batch_size):
idx = indices[b]
agg = agg_pred[b]
sel = sel_pred[b]
cond = []
for i in range(len(op_batch_list[b])):
col = cond_col_list[i][b]
op = op_idx_batch_list[b][i]
span_l = cond_span_l_list[i][b]
span_r = cond_span_r_list[i][b]
cond.append((col, op, (span_l, span_r)))
r_list.append(ParseResult(idx, agg, sel, cond))
return r_list
def infer_exec(model, batch_size, sql_data, table_data, db_path):
engine = DBEngine(db_path)
model.eval()
perm = list(range(len(sql_data)))
tot_acc_num = 0.0
acc_of_log = 0.0
st = 0
while st < len(sql_data):
ed = st + batch_size if st + batch_size < len(perm) else len(perm)
q_seq, col_seq, col_num, ans_seq, query_seq, gt_cond_seq, raw_data = \
to_batch_seq(sql_data, table_data, perm, st, ed, ret_vis_data=True)
raw_q_seq = [x[0] for x in raw_data]
raw_col_seq = [x[1] for x in raw_data]
query_gt, table_ids = to_batch_query(sql_data, perm, st, ed)
gt_sel_seq = [x[1] for x in ans_seq]
score = model.forward(q_seq,
col_seq,
col_num, (True, True, True),
gt_sel=gt_sel_seq)
pred_queries = model.gen_query(score, q_seq, col_seq, raw_q_seq,
raw_col_seq, (True, True, True))
for idx, (sql_gt, sql_pred,
tid) in enumerate(zip(query_gt, pred_queries, table_ids)):
print_table(table_data, tid)
raw_query = engine.get_query_raw(tid, sql_pred['sel'],
sql_pred['agg'],
sql_pred['conds'], table_data)
# ret_gt = engine.execute(tid, sql_gt['sel'], sql_gt['agg'], sql_gt['conds'])
# try:
# ret_pred = engine.execute(tid, sql_pred['sel'], sql_pred['agg'], sql_pred['conds'])
# except:
# ret_pred = None
# isCorrect = (ret_gt == ret_pred)
print "==> Here's an example"
print 'English: ', raw_q_seq[0]
print 'SQL: ', raw_query
# print 'Execution: ', str(ret_pred[0]).encode('utf-8') if ret_pred else 'null'
# print 'Correct: ', isCorrect
print '\n'
break
# INFERENCE TIME!
print '==> Your turn, type a question about this table'
raw_q_seq, q_seq = input_tokenize_wrapper()
raw_q_seq = raw_q_seq.decode('utf-8')
q_seq = [w.decode('utf-8') for w in q_seq]
raw_q_seq, q_seq = [raw_q_seq, raw_q_seq], [q_seq, q_seq]
score = model.forward(q_seq,
col_seq,
col_num, (True, True, True),
gt_sel=gt_sel_seq)
pred_queries = model.gen_query(score, q_seq, col_seq, raw_q_seq,
raw_col_seq, (True, True, True))
for idx, (sql_pred, tid) in enumerate(zip(pred_queries, table_ids)):
raw_query = engine.get_query_raw(tid,
sql_pred['sel'],
sql_pred['agg'],
sql_pred['conds'],
table_data,
lower=True)
# try:
# ret_pred = engine.execute(tid, sql_pred['sel'], sql_pred['agg'], sql_pred['conds'])
# except:
# ret_pred = '<Failed>'
print 'ENGLISH: ', raw_q_seq[0]
print 'SQL: ', raw_query
# print 'Execution: ', str(ret_pred[0]).encode('utf-8') if ret_pred else 'null'
print '\n\n'
break
st += 1
sleep(5)
def main():
dummy_parser = argparse.ArgumentParser(description='train.py')
opts.model_opts(dummy_parser)
opts.train_opts(dummy_parser)
dummy_opt = dummy_parser.parse_known_args([])[0]
engine = DBEngine(opt.db_file)
with codecs.open(opt.source_file, "r", "utf-8") as corpus_file:
sql_list = [json.loads(line)['sql'] for line in corpus_file]
js_list = table.IO.read_anno_json(opt.anno)
prev_best = (None, None)
print(opt.split, opt.model_path)
num_models = 0
f_out = open('Two-stream-' + opt.unseen_table + '-out-case', 'w')
for fn_model in glob.glob(opt.model_path):
num_models += 1
sys.stdout.flush()
print(fn_model)
print(opt.anno)
opt.model = fn_model
translator = table.Translator(opt, dummy_opt.__dict__)
data = table.IO.TableDataset(js_list, translator.fields, None, False)
#torch.save(data, open( 'data.pt', 'wb'))
test_data = table.IO.OrderedIterator(dataset=data,
device=opt.gpu,
batch_size=opt.batch_size,
train=False,
sort=True,
sort_within_batch=False)
# inference
r_list = []
for batch in test_data:
r_list += translator.translate(batch)
r_list.sort(key=lambda x: x.idx)
assert len(r_list) == len(
js_list), 'len(r_list) != len(js_list): {} != {}'.format(
len(r_list), len(js_list))
# evaluation
error_cases = []
for pred, gold, sql_gold in zip(r_list, js_list, sql_list):
error_cases.append(pred.eval(opt.split, gold, sql_gold, engine))
# error_cases.append(pred.eval(opt.split, gold, sql_gold))
print('Results:')
for metric_name in ('all', 'exe', 'agg', 'sel', 'where', 'col', 'span',
'lay', 'BIO', 'BIO_col'):
c_correct = sum((x.correct[metric_name] for x in r_list))
print('{}: {} / {} = {:.2%}'.format(metric_name, c_correct,
len(r_list),
c_correct / len(r_list)))
if metric_name == 'all':
all_acc = c_correct
if metric_name == 'exe':
exe_acc = c_correct
if prev_best[
0] is None or all_acc + exe_acc > prev_best[1] + prev_best[2]:
prev_best = (fn_model, all_acc, exe_acc)
# random.shuffle(error_cases)
for error_case in error_cases:
if len(error_case) == 0:
continue
json.dump(error_case, f_out)
f_out.write('\n')
# print('table_id:\t', error_case['table_id'])
# print('question_id:\t',error_case['question_id'])
# print('question:\t', error_case['question'])
# print('table_head:\t', error_case['table_head'])
# print('table_content:\t', error_case['table_content'])
# print()
# print(error_case['BIO'])
# print(error_case['BIO_col'])
# print()
# print('gold:','agg:',error_case['gold']['agg'],'sel:',error_case['predict']['sel'])
# for i in range(len(error_case['gold']['conds'])):
# print(error_case['gold']['conds'][i])
# print('predict:','agg:',error_case['predict']['agg'],'sel:',error_case['predict']['sel'])
# for i in range(len(error_case['predict']['conds'])):
# print(error_case['predict']['conds'][i])
# print('\n\n')
print(prev_best)
if (opt.split == 'dev') and (prev_best[0] is not None) and num_models != 1:
if opt.unseen_table == 'full':
with codecs.open(os.path.join(opt.save_path, 'dev_best.txt'),
'w',
encoding='utf-8') as f_out:
f_out.write('{}\n'.format(prev_best[0]))
else:
with codecs.open(os.path.join(
opt.save_path, 'dev_best_' + opt.unseen_table + '.txt'),
'w',
encoding='utf-8') as f_out:
f_out.write('{}\n'.format(prev_best[0]))
from lib.dbengine import DBEngine
from lib.table import Table
#from lib.query import Query
import json
import jsonlines
#create DataBase Engine
DB=DBEngine("data/train.db")
#load table
tables=[json.loads(x) for x in open("data/train.tables.jsonl")]
print(len(tables))
#Create Table
table=Table(tables[0]['id'], tables[0]['header'], tables[0]['types'], tables[0]['rows'])
print(table)
#sample
print(table.generate_queries(DB.conn,n=5, max_tries=5, lower=True))
queries = table.generate_queries(DB.conn,n=5, max_tries=5, lower=True)
print(str(queries[0][0]))
def augment_data():
new_train_path = "data/augmented_train.jsonl"
error_cnt = 0
with open(new_train_path,'w') as f:
for i in range(len(tables)):
table_new = Table(tables[i]['id'], tables[i]['header'], tables[i]['types'], tables[i]['rows'])
try:
queries = table_new.generate_queries(DB.conn,n=10, max_tries=100, lower=True)
for query in queries:
#print(query[1])
info = {}
def epoch_exec_acc(models,
batch_size,
sql_data,
table_data,
db_path,
db_content,
BERT=False,
POS=False,
ensemble='single'):
engine = DBEngine(db_path)
if len(models) > 1:
models_eval = list()
for nn in models:
nn.eval()
models_eval.append(nn)
else:
model = models[0]
model.eval()
perm = list(range(len(sql_data)))
tot_acc_num = 0.0
acc_of_log = 0.0
st = 0
while st < len(sql_data):
ed = st + batch_size if st + batch_size < len(perm) else len(perm)
if ensemble == 'mixed':
if POS:
q_pos, q_seq_bert, col_seq, col_num, ans_seq, query_seq, gt_cond_seq, q_type, col_type,\
raw_data = to_batch_seq(sql_data, table_data, perm, st, ed, db_content, ret_vis_data=True, BERT=BERT, POS=POS)
q_pos, q_seq, col_seq, col_num, ans_seq, query_seq, gt_cond_seq, q_type, col_type,\
raw_data = to_batch_seq(sql_data, table_data, perm, st, ed, db_content, ret_vis_data=True, BERT=False, POS=POS)
else:
q_seq_bert, col_seq, col_num, ans_seq, query_seq, gt_cond_seq, q_type, col_type,\
raw_data = to_batch_seq(sql_data, table_data, perm, st, ed, db_content, ret_vis_data=True, BERT=BERT, POS=POS)
q_seq, col_seq, col_num, ans_seq, query_seq, gt_cond_seq, q_type, col_type,\
raw_data = to_batch_seq(sql_data, table_data, perm, st, ed, db_content, ret_vis_data=True, BERT=False, POS=POS)
else:
if POS:
q_pos, q_seq, col_seq, col_num, ans_seq, query_seq, gt_cond_seq, q_type, col_type,\
raw_data = to_batch_seq(sql_data, table_data, perm, st, ed, db_content, ret_vis_data=True, BERT=BERT, POS=POS)
else:
q_seq, col_seq, col_num, ans_seq, query_seq, gt_cond_seq, q_type, col_type,\
raw_data = to_batch_seq(sql_data, table_data, perm, st, ed, db_content, ret_vis_data=True, BERT=BERT, POS=POS)
raw_q_seq = [x[0] for x in raw_data]
raw_col_seq = [x[1] for x in raw_data]
query_gt, table_ids = to_batch_query(sql_data, perm, st, ed)
gt_sel_seq = [x[1] for x in ans_seq]
gt_agg_seq = [x[0] for x in ans_seq]
if len(models) > 1:
scores = list()
for i, model in enumerate(models_eval):
if ensemble == 'mixed':
if i == 0:
gt_where_seq = model.generate_gt_where_seq(
q_seq, col_seq, query_seq)
if POS:
score = model.forward(q_seq,
col_seq,
col_num,
q_type,
col_type, (True, True, True),
q_pos=q_pos)
else:
score = model.forward(q_seq, col_seq, col_num,
q_type, col_type,
(True, True, True))
else:
gt_where_seq = model.generate_gt_where_seq(
q_seq_bert, col_seq, query_seq)
if POS:
score = model.forward(q_seq_bert,
col_seq,
col_num,
q_type,
col_type, (True, True, True),
q_pos=q_pos)
else:
score = model.forward(q_seq_bert, col_seq, col_num,
q_type, col_type,
(True, True, True))
else:
gt_where_seq = model.generate_gt_where_seq(
q_seq, col_seq, query_seq)
if POS:
score = model.forward(q_seq,
col_seq,
col_num,
q_type,
col_type, (True, True, True),
q_pos=q_pos)
else:
score = model.forward(q_seq, col_seq, col_num, q_type,
col_type, (True, True, True))
scores.append(score)
model = models_eval[0]
pred_queries = model.gen_query(scores, q_seq, col_seq, raw_q_seq,
raw_col_seq, (True, True, True))
for idx, (sql_gt, sql_pred,
tid) in enumerate(zip(query_gt, pred_queries,
table_ids)):
ret_gt = engine.execute(tid, sql_gt['sel'], sql_gt['agg'],
sql_gt['conds'])
try:
ret_pred = engine.execute(tid, sql_pred['sel'],
sql_pred['agg'],
sql_pred['conds'])
except:
ret_pred = None
tot_acc_num += (ret_gt == ret_pred)
else:
gt_where_seq = model.generate_gt_where_seq(q_seq, col_seq,
query_seq)
if POS:
score = [
model.forward(q_seq,
col_seq,
col_num,
q_type,
col_type, (True, True, True),
q_pos=q_pos)
]
else:
score = [
model.forward(q_seq, col_seq, col_num, q_type, col_type,
(True, True, True))
]
pred_queries = model.gen_query(score, q_seq, col_seq, raw_q_seq,
raw_col_seq, (True, True, True))
for idx, (sql_gt, sql_pred,
tid) in enumerate(zip(query_gt, pred_queries,
table_ids)):
ret_gt = engine.execute(tid, sql_gt['sel'], sql_gt['agg'],
sql_gt['conds'])
try:
ret_pred = engine.execute(tid, sql_pred['sel'],
sql_pred['agg'],
sql_pred['conds'])
except:
ret_pred = None
tot_acc_num += (ret_gt == ret_pred)
st = ed
return tot_acc_num / len(sql_data)
import json
import argparse
from tqdm import tqdm
from lib.query import Query
from lib.dbengine import DBEngine
from lib.common import count_lines
if __name__=="__main__":
parser = argparse.ArgumentParser()
parser.add_argument("--source_file")
parser.add_argument("--db_file")
parser.add_argument("--pred_file")
parser.add_argument("--ordered", action='store_true')
args = parser.parse_args()
engine = DBEngine(args.db_file)
ex_acc_list = []
lf_acc_list = []
with open(args.source_file) as sf, open(args.pred_file) as pf:
for source_line, pred_line in tqdm(zip(sf, pf), total=count_lines(args.source_file)):
# line별 정답과 예측 샘플 가져오기
gold_example = json.loads(source_line)
pred_example = json.loads(pred_line)
# 정답 샘플 lf, ex 구하기
lf_gold_query = Query.from_dict(gold_example['sql'], ordered=args.ordered)
ex_gold = engine.execute_query(gold_example['table_id'], lf_gold_query, lower=True)
# error가 아닌 경우 예측 샘플 lf, ex 구하기
lf_pred_query = None
ex_pred = pred_example.get('error', None)
