def main():
"""Main entry point"""
args = basic_parser().parse_args()
if VERBOSE:
print(args.instances)
for instance in args.instances:
graph = None
with open(instance, 'r') as instance_file:
graph = Graph(instance_file)
graph.name = os.path.splitext(os.path.basename(instance))[0]
if VERBOSE:
print('-' * 100)
print('File: {name}.txt'.format(name=graph.name))
start = time.time()
S = iterated_local_search(graph, args.max_iter, args.time_limit,
args.exclude_ls)
elapsed = time.time() - start
if VERBOSE:
if S is None:
print('! NO SOLUTION FOUND: NO SATISFYING INITIAL !')
else:
print('O* = {o}'.format(o=IlsObjective()(graph, S, None)))
print('All served?', S.all_served(graph.customer_number))
print('Everything satisfied?',
satisfies_all_constraints(graph, S))
print('----- PERFORMANCE -----')
print('ILS took {some} seconds'.format(some=elapsed))
# visualize(S)
print('-' * 100)
if S is not None and not args.no_sol:
filedir = os.path.dirname(os.path.abspath(__file__))
generate_sol(graph, S, cwd=filedir, prefix='_ils_')
return 0
def test():
uno = Node("uno")
dos = Node("dos")
tres = Node("tres")
quatro = Node("quatro")
r = Relation("R", directed = True)
s = Relation("S", directed = True)
t = Relation("T", directed = True)
r.add_node(uno)
r.add_node(dos)
r.add_node(quatro)
r.add_edge((uno, dos))
r.add_edge((quatro, dos))
s.add_node(dos)
s.add_node(tres)
s.add_edge((dos, tres))
t.add_node(tres)
t.add_node(quatro)
t.add_node(uno)
t.add_edge((tres, quatro))
t.add_edge((quatro, uno))
g = Graph("graph", [uno, dos, tres, quatro], [r, s, t])
g.print_all()
pr_0 = Rule("pr_0", ["x", "y"], [(r, ("x", "y"))])
pr_1 = Rule("pr_1", ["x", "y"], [(s, ("x", "y"))])
pr_2 = Rule("pr_2", ["x", "y"], [(t, ("x", "y"))])
goal = Rule("Goal", ["x", "y"], [(pr_0, ("x","w")), (pr_1, ("w","z")), (pr_2, ("z","y"))], goal=True)
rules = [pr_0, pr_1, pr_2, goal]
print("Rules:")
for r in rules:
print("\t* {}".format(r))
print("")
solutions = g.resolve(rules)
if len(solutions) != 0:
print("Solutions:")
for s in solutions:
print("\t* ({0} - {1})".format(s[0].id, s[1].id))
else:
print("No solution!")
class TestExample1(unittest.TestCase):
a, b, c, d = [Vertex(l) for l in 'ABCD']
edges = [
Edge(a, b, 1),
Edge(a, c, 1),
Edge(c, a, 1),
Edge(b, c, 1),
Edge(d, c, 1),
]
g = Graph([a,b,c,d], edges)
def test_graph_connection_cache(self):
self.assertEqual(self.g.inV[self.a], set([(self.c, 1)]))
self.assertEqual(self.g.inV[self.b], set([(self.a, 1)]))
self.assertEqual(self.g.inV[self.c], set([(self.a, 1), (self.b, 1), (self.d, 1)]))
self.assertEqual(self.g.inV[self.d], set())
self.assertEqual(self.g.outV[self.a], set([(self.b, 1), (self.c, 1)]))
self.assertEqual(self.g.outV[self.b], set([(self.c, 1)]))
self.assertEqual(self.g.outV[self.c], set([(self.a, 1)]))
self.assertEqual(self.g.outV[self.d], set([(self.c, 1)]))
def test_pagerank(self):
pr_result = self.g.pagerank()
self.assertAlmostEqual(pr_result[self.a], 1.49, places=2)
self.assertAlmostEqual(pr_result[self.b], 0.78, places=2)
self.assertAlmostEqual(pr_result[self.c], 1.58, places=2)
self.assertAlmostEqual(pr_result[self.d], 0.15, places=2)
class TestExample2(unittest.TestCase):
home = Vertex('Home')
about = Vertex('About')
product = Vertex('Product')
links = Vertex('Links')
a = Vertex('External Site A')
b = Vertex('External Site B')
c = Vertex('External Site C')
d = Vertex('External Site D')
edges = [
Edge(home, about, 1), Edge(about, home, 1),
Edge(home, product, 1), Edge(product, home, 1),
Edge(home, links, 1), Edge(links, home, 1),
Edge(links, a, 1),
Edge(links, b, 1),
Edge(links, c, 1),
Edge(links, d, 1),
]
g = Graph([home, about, product, links, a, b, c, d], edges)
def test_pagerank(self):
pr_result = self.g.pagerank()
self.assertAlmostEqual(pr_result[self.home], 0.92, places=2)
self.assertAlmostEqual(pr_result[self.about], 0.41, places=2)
self.assertAlmostEqual(pr_result[self.product], 0.41, places=2)
self.assertAlmostEqual(pr_result[self.links], 0.41, places=2)
self.assertAlmostEqual(pr_result[self.a], 0.22, places=2)
self.assertAlmostEqual(pr_result[self.b], 0.22, places=2)
self.assertAlmostEqual(pr_result[self.c], 0.22, places=2)
self.assertAlmostEqual(pr_result[self.d], 0.22, places=2)
def testFloyds(self):
expected = {
0: {0: 0, 1: 6, 2: 4, 3: 13, 4: 5, 5: 10, 6: 7 },
1: {0: float('inf'), 1: 0, 2: 3,
3: 12, 4: 4, 5: 7, 6: 6
},
2: {0: float('inf'), 1: float('inf'),
2: 0, 3: 9, 4: 1, 5: 6, 6: 3
},
3: {0: float('inf'), 1: float('inf'), 2: float('inf'),
3: 0, 4: 1, 5: 6, 6: 3
},
4: {0: float('inf'), 1: float('inf'), 2: float('inf'),
3: float('inf'), 4: 0, 5: 5, 6: 2
},
5: {0: float('inf'), 1: float('inf'), 2: float('inf'),
3: float('inf'), 4: float('inf'), 5: 0, 6: float('inf')
},
6: {0: float('inf'), 1: float('inf'), 2: float('inf'),
3: float('inf'), 4: float('inf'), 5: float('inf'), 6: 0
}
}
actual = self.g.floyds()
self.assertDictEqual(expected, actual) # handy
self.assertTrue(p==q for p, q in zip(expected.items(), actual.items())) #does the same
self.assertTrue(expected.items() == actual.items()) #does the same
"""
grph = {0: {0: 0, 1: 1, 2: 4},
1: {0: inf, 1: 0, 2: 2},
2: {0: inf, 1: inf, 2: 0}
}
"""
grph = Graph()
for v in range(3):
grph.addVertex(v)
grph.addEdge(0, 1, 1)
grph.addEdge(0, 2, 4)
grph.addEdge(1, 2, 2)
"""
{0: {0: 0, 1: 1, 2: 3},
1: {0: inf, 1: 0, 2: 2},
2: {0: inf, 1: inf, 2: 0}}
"""
expected = {0: {0: 0, 1: 1, 2: 3},
1: {0: float('inf'), 1: 0, 2: 2},
2: {0: float('inf'), 1: float('inf'), 2: 0}
}
actual = grph.floyds()
self.assertDictEqual(expected, actual) # handy
self.assertTrue(p==q for p, q in zip(expected.items(), actual.items())) #does the same
self.assertTrue(expected.items() == actual.items()) #does the same
def summarize(text):
print("Creating graph...")
vertices = [Vertex(s) for s in text_to_sentences(text)]
edges = []
for sentence_a, sentence_b in combinations(vertices, 2):
score = similarity(sentence_a.data, sentence_b.data)
edges.append(Edge(sentence_a, sentence_b, score))
edges.append(Edge(sentence_b, sentence_a, score))
# drop the memoized entries
sentence_to_words.cache_clear()
g = Graph(vertices, edges)
print("Graph initialized: |V|=%d, |E|=%d" % (len(vertices), len(edges)))
print("Running pagerank...")
return g.sort_pagerank()
def main():
structures = pd.read_csv('../../../input/structures.csv')
strs_gp = structures.groupby('molecule_name')
bonds = pd.read_csv('../../../input/bonds.csv')
bonds_gp = bonds.groupby('molecule_name')
train = pd.merge(
pd.read_csv('../../../dataset/train.csv'),
pd.read_csv('../../../dataset/scalar_coupling_contributions.csv'))
train_gp = train.groupby('molecule_name')
list_atoms = list(set(structures['atom']))
print(list_atoms)
model = TripletUpdateNet(num_layer=4,
node_dim=512,
edge_dim=256,
triplet_dim=128)
model.to_gpu()
train_charges = pd.read_csv('../../../input/train_ob_charges.csv')
train_charges_gp = train_charges.groupby('molecule_name')
target1 = 'dsgdb9nsd_000008'
g1 = Graph(strs_gp.get_group(target1), bonds_gp.get_group(target1),
list_atoms, train_charges_gp.get_group(target1))
y1 = train_gp.get_group(target1)
out = model([g1], [y1])
print(out)
target2 = 'dsgdb9nsd_000010'
g2 = Graph(strs_gp.get_group(target2), bonds_gp.get_group(target2),
list_atoms, train_charges_gp.get_group(target2))
y2 = train_gp.get_group(target2)
out = model([g2], [y2])
print(out)
out = model([g1, g2], [y1, y2])
print(out)
def test_remove_node(self):
g = Graph()
g.add_edge(0, 1)
g.add_edge(1, 2)
g.add_edge(2, 3)
g.remove_vertex(1)
self.assertTrue((0, 1) not in g)
self.assertTrue((1, 2) not in g)
self.assertTrue((1, 2) not in g)
self.assertTrue((2, 3) in g)
def testHavelHakimiAlgorithm(self):
self.assertTrue(Graph.isGraphicSequenceIterative([2, 2, 2, 2, 1, 1]))
self.assertTrue(Graph.isGraphicSequenceIterative([3, 3, 3, 3, 3, 3]))
self.assertTrue(Graph.isGraphicSequenceIterative([3, 3, 2, 1, 1]))
self.assertFalse(Graph.isGraphicSequenceIterative([4, 3, 2, 2, 2, 1, 1]))
self.assertFalse(Graph.isGraphicSequenceIterative([6, 6, 5, 4, 4, 2, 1]))
self.assertFalse(Graph.isGraphicSequenceIterative([3, 3, 3, 1]))
def testErdosGallaiTheorem(self):
self.assertTrue(Graph.isGraphicSequence([2, 2, 2, 2, 1, 1]))
self.assertTrue(Graph.isGraphicSequence([3, 3, 3, 3, 3, 3]))
self.assertTrue(Graph.isGraphicSequence([3, 3, 2, 1, 1]))
self.assertFalse(Graph.isGraphicSequence([4, 3, 2, 2, 2, 1, 1]))
self.assertFalse(Graph.isGraphicSequence([6, 6, 5, 4, 4, 2, 1]))
self.assertFalse(Graph.isGraphicSequence([3, 3, 3, 1]))
def main():
structures = pd.read_csv('../../../input/structures.csv')
strs_gp = structures.groupby('molecule_name')
bonds = pd.read_csv('../../../input/bonds.csv')
bonds_gp = bonds.groupby('molecule_name')
train = pd.read_csv('../../../input/train2.csv')
train_gp = train.groupby('molecule_name')
train_charges = pd.read_csv('../../../input/train_ob_charges.csv')
train_charges_gp = train_charges.groupby('molecule_name')
list_atoms = list(set(structures['atom']))
print(list_atoms)
model = EdgeUpdateNet(num_layer=10, node_dim=512, edge_dim=512)
model.to_gpu()
target1 = 'dsgdb9nsd_000008'
g1 = Graph(strs_gp.get_group(target1), bonds_gp.get_group(target1),
list_atoms, train_charges_gp.get_group(target1))
y1 = train_gp.get_group(target1)
out = model([g1], [y1])
print(out)
target2 = 'dsgdb9nsd_000010'
g2 = Graph(strs_gp.get_group(target2), bonds_gp.get_group(target2),
list_atoms, train_charges_gp.get_group(target2))
y2 = train_gp.get_group(target2)
out = model([g2], [y2])
print(out)
out = model([g1, g2], [y1, y2])
print(out)
def __init__(self, builder, changed_method):
gtk.ScrolledWindow.__init__(self)
self.set_policy(gtk.POLICY_AUTOMATIC, gtk.POLICY_AUTOMATIC)
self.builder = builder
self.event_box = EventBox()
self.event_box.add_events(gtk.gdk.BUTTON_PRESS_MASK)
self.event_box.add_events(gtk.gdk.BUTTON_RELEASE_MASK)
self.event_box.add_events(gtk.gdk.MOTION_NOTIFY)
self.event_box.add_events(gtk.gdk.BUTTON1_MOTION_MASK)
self.event_box.add_events(gtk.gdk.KEY_PRESS_MASK)
self.event_box.set_events(gtk.gdk.POINTER_MOTION_MASK | gtk.gdk.POINTER_MOTION_HINT_MASK)
self.event_box.connect('motion-notify-event', self.mouse_motion)
self.event_box.connect('button-press-event', self.mouse_press)
self.event_box.connect('button-release-event', self.mouse_release)
self.event_box.connect('scroll-event', self.mouse_scroll)
self.action = None
self.menu = None
self.box = None
self.last_vertex_clicked = None
self.last_position_clicked = None
self.box_selecting = None
self.changed = False
self.changed_method = changed_method
self.graph = GraphController()
self.area = GraphArea(self.graph)
self.event_box.add(self.area)
self.add_with_viewport(self.event_box)
self.area.show()
self.event_box.show()
self.show()
# To UNDO and REDO actions
self.states = []
self.state_index = None
self.add_state()
# Algorithm stuff
self.algorithm_runner = None
self.algorithm_playing = None
self.algorithm_paused = None
self.algorithm_states = []
def extract_func(self, addr):
curr = self.code[addr]
gph = Graph(self, addr)
rest = []
while 1:
if not gph.exists(curr):
if is_uncond_jump(curr) and len(curr.operands) > 0:
if curr.operands[0].type == X86_OP_IMM:
addr = curr.operands[0].value.imm
nxt = self.code[addr]
gph.set_next(curr, nxt)
rest.append(nxt.address)
elif is_cond_jump(curr) and len(curr.operands) > 0:
if curr.operands[0].type == X86_OP_IMM:
nxt_jump = self.code[curr.operands[0].value.imm]
direct_nxt = self.code[curr.address + curr.size]
gph.set_cond_next(curr, nxt_jump, direct_nxt)
rest.append(nxt_jump.address)
rest.append(direct_nxt.address)
elif is_ret(curr):
gph.add_node(curr)
else:
nxt = self.code[curr.address + curr.size]
gph.set_next(curr, nxt)
rest.append(nxt.address)
try:
curr = self.code[rest.pop()]
except:
break
return gph
def setUp(self):
self.g = Graph()
for v in range(7):
self.g.addVertex(v)
self.g.addEdge(0, 1, 6)
self.g.addEdge(0, 2, 4)
self.g.addEdge(1, 2, 3)
self.g.addEdge(1, 5, 7)
self.g.addEdge(2, 3, 9)
self.g.addEdge(2, 4, 1)
self.g.addEdge(3, 4, 1)
self.g.addEdge(4, 5, 5)
self.g.addEdge(4, 6, 2)
def setUp(self):
from io import StringIO
self.graph = Graph(StringIO(SearchUtilsTests.BASIC_VRP))
super(SearchUtilsTests, self).setUp()
def distance(graph, solution, md):
"""Calculate overall distance"""
del md
s = 0
for route in solution:
s += sum(graph.costs[(route[i], route[i + 1])]
for i in range(len(route) - 1))
return s
self.obj = distance
def setUp(self):
# A brand new graph.
self.new = Graph()
# A disconnected graph
self.disconnected = Graph()
self.disconnected.add_edge(1, 2)
self.disconnected.add_edge(3, 4)
# A complete graph
self.complete = Graph()
self.complete.add_edge(1, 2, 3)
self.complete.add_edge(2, 3, 5)
self.complete.add_edge(3, 4, 7)
self.complete.add_edge(4, 1, 5)
self.complete.add_edge(1, 3, 4)
self.complete.add_edge(2, 4, 6)
visited = set()
def path_between(start, end):
if start == end:
return True
for node in start.adjacent:
if node in visited:
next
visited.add(node)
if path_between(node, end):
return True
return False
graph = Graph((
(1, (2, 6)),
(2, (3,)),
(3, (5,)),
(5, ()),
(6, (3,)),
(7, (2,))
))
assert path_between(graph.find(1), graph.find(1))
assert path_between(graph.find(1), graph.find(5))
assert not path_between(graph.find(5), graph.find(7))
else:
for v in graph.adj[u]:
if v not in visited:
visited.append(v)
queue.append(v)
return bfs_len, visited
if __name__ == '__main__':
filename = "../tests/DiameterGraph.txt"
with open(filename) as fd:
V = int(fd.readline())
E = int(fd.readline())
g = Graph(V)
for lines in range(E):
u, v = tuple(map(int, fd.readline().split()))
g.add_edge(u, v)
maxd = 0
for u in g.adj.iterkeys():
d, vertices = find_diameter(g, u)
maxd = max(d, maxd)
print "Max diameter {} vertices {}".format(maxd, vertices)
def test():
# Création des noeuds
uno = Node("uno")
dos = Node("dos")
tres = Node("tres")
quatro = Node("quatro")
# Création des relations
r = Relation("R", directed = True)
s = Relation("S", directed = True)
t = Relation("T", directed = True)
# Ajout des noeuds dans les relations, et création des arêtes
r.add_node(uno)
r.add_node(dos)
r.add_node(quatro)
r.add_edge((uno, dos))
r.add_edge((quatro, dos))
s.add_node(dos)
s.add_node(tres)
s.add_edge((dos, tres))
t.add_node(tres)
t.add_node(quatro)
t.add_node(uno)
t.add_edge((tres, quatro))
t.add_edge((quatro, uno))
# Création du graph, qui contient la liste des noeuds créés et la liste des relations utilisant les noeuds
g = Graph("graph", [uno, dos, tres, quatro], [r, s, t])
# Méthode permettant de sortir toutes les caractéristiques du graphe
g.print_all()
# Création des règles!
# Définition d'une règle!
pr_0 = Rule("pr_0", ["x", "y"], [(r, ("x", "z")), (s, ("z", "y"))])
# Définition du goal, utilisant la règle pr_0!
goal = Rule("Goal", ["x", "y"], [(pr_0, ("x","y"))], goal=True)
# Ajout des règles dans une liste, afin de pouvoir la passer au graphe pour la résolution
rules = [pr_0, goal]
# Impression des règles
print("Rules:")
for r in rules:
print("\t* {}".format(r))
print("")
# Résolution du problème
solutions = g.resolve(rules)
# Impression des solutions
if len(solutions) != 0:
print("Solutions:")
for s in solutions:
print("\t* ({0} - {1})".format(s[0].id, s[1].id))
else:
print("No solution!")
from lib.graph import Graph
# Predict expected return for each time step
agent = Agent(STATES, ACTIONS, REWARDS, HORIZON, DISCOUNT_FACTOR, POLICY,
TRANSITIONS)
expected_return_under_policy = agent.expected_return_under_policy()
# Get expected rewards at end of episode
expected_rewards = {}
for state in STATES:
expected_rewards[state] = round(expected_return_under_policy[state,
HORIZON - 1])
# Simulate an episode to get actual rewards
actual_rewards = {}
for state in STATES:
episode = Episode(ACTIONS, STATES, REWARDS, HORIZON, POLICY, TRANSITIONS,
state)
actual_rewards[state] = 0
for _ in range(EPISODES):
actual_rewards[state] += episode.play()
actual_rewards[state] /= EPISODES
# Compare predicted vs. actual rewards
print('Expected rewards:', expected_rewards)
print('Actual rewards: ', actual_rewards)
# Draw state-action diagram
graph = Graph(STATES, ACTIONS, LABELS)
graph.draw()
def testPrims(self):
expectedMST = [(0, 2, 4), (2, 4, 1), (4, 3, 1), (4, 6, 2), (2, 1, 3), (4, 5, 5)]
actualMST = self.g.mspPrims()
for edge in expectedMST:
self.assertTrue(edge in actualMST)
# second example
grph = Graph()
for v in range(8):
grph.addVertex(v)
grph.addEdge(0, 1, 4)
grph.addEdge(0, 2, 6)
grph.addEdge(0, 3, 16)
grph.addEdge(1, 5, 24)
grph.addEdge(2, 5, 23)
grph.addEdge(2, 4, 5)
grph.addEdge(2, 3, 8)
grph.addEdge(3, 4, 10)
grph.addEdge(3, 7, 21)
grph.addEdge(4, 5, 18)
grph.addEdge(4, 6, 11)
grph.addEdge(4, 7, 14)
grph.addEdge(5, 6, 9)
grph.addEdge(6, 7, 7)
expMST = [(0, 1, 4), (0, 2, 6), (2, 4, 5), (2, 3, 8), (4, 6, 11), (6, 7, 7), (6, 5, 9)]
actualMST = grph.mspPrims()
for edge in expMST:
self.assertTrue(edge in actualMST)
# third example
grph = Graph()
for v in range(7):
grph.addVertex(v)
grph.addEdge(0, 1, 4)
grph.addEdge(0, 2, 8)
grph.addEdge(1, 2, 9)
grph.addEdge(1, 3, 8)
grph.addEdge(1, 4, 10)
grph.addEdge(2, 3, 2)
grph.addEdge(2, 5, 1)
grph.addEdge(3, 4, 7)
grph.addEdge(3, 5, 9)
grph.addEdge(4, 5, 5)
grph.addEdge(4, 6, 6)
grph.addEdge(5, 6, 2)
expMST = [(0, 1, 4), (0, 2, 8), (2, 5, 1), (2, 3, 2), (5, 6, 2), (5, 4, 5)]
actualMST = grph.mspPrims()
for edge in expMST:
self.assertTrue(edge in actualMST)
# fourth example
grph = Graph()
for v in range(6):
grph.addVertex(v)
grph.addEdge(0, 1, 2)
grph.addEdge(0, 2, 3)
grph.addEdge(1, 2, 6)
grph.addEdge(1, 3, 5)
grph.addEdge(1, 4, 3)
grph.addEdge(2, 4, 2)
grph.addEdge(3, 4, 1)
grph.addEdge(3, 5, 2)
grph.addEdge(4, 5, 4)
expMST = [(0, 1, 2), (0, 2, 3), (2, 4, 2), (4, 3, 1), (3, 5, 2)]
actualMST = grph.mspPrims()
for edge in expMST:
self.assertTrue(edge in actualMST)
def testDensity(self):
g = Graph()
vertices = ['a', 'b', 'c', 'd', 'e', 'f']
for v in vertices:
g.addVertex(v)
"""
g = { "a" : ["d","f"],
"b" : ["c","b"],
"c" : ["b", "c", "d", "e"],
"d" : ["a", "c"],
"e" : ["c"],
"f" : ["a"]
}
"""
g.addEdge('a', 'd')
g.addEdge('a', 'f')
g.addEdge('b', 'c')
g.addEdge('b', 'b')
g.addEdge('c', 'c')
g.addEdge('c', 'd')
g.addEdge('c', 'e')
self.assertAlmostEqual(0.466666666667, g.density(), places=7)
"""
complete_graph = {
"a" : ["b","c"],
"b" : ["a","c"],
"c" : ["a","b"]
}
"""
complete_graph = Graph()
vertices = ['a', 'b', 'c']
for v in vertices:
complete_graph.addVertex(v)
complete_graph.addEdge('a', 'b')
complete_graph.addEdge('a', 'c')
complete_graph.addEdge('b', 'c')
self.assertEqual(1.0, complete_graph.density())
"""
isolated_graph = {
"a" : [],
"b" : [],
"c" : []
}
"""
isolated_graph = Graph()
vertices = ['a', 'b', 'c']
for v in vertices:
isolated_graph.addVertex(v)
self.assertEqual(0.0, isolated_graph.density())
def testFindAllPaths(self):
g = Graph()
g.addVertex('s')
g.addVertex('u')
g.addVertex('v')
g.addVertex('t')
g.addEdge('s', 'u', 20)
g.addEdge('s', 'v', 10)
g.addEdge('u', 'v', 30)
g.addEdge('u', 't', 10)
g.addEdge('v', 't', 20)
paths = g.find_all_paths('s', 't', [])
expectedPaths = [
['s', 'u', 't'],
['s', 'u', 'v', 't'],
['s', 'v', 't']
]
for path in expectedPaths:
self.assertTrue(path in paths)
def testFindShortestPath(self):
g = Graph()
g.addVertex('s')
g.addVertex('u')
g.addVertex('v')
g.addVertex('t')
g.addEdge('s', 'u', 20)
g.addEdge('s', 'v', 10)
g.addEdge('u', 'v', 30)
g.addEdge('u', 't', 10)
g.addEdge('v', 't', 20)
expectedPath = ['s', 'u', 't']
actualPath = g.find_shortest_path('s', 't', [])
for v in expectedPath:
self.assertTrue(v in actualPath)
def testFindPath(self):
g = Graph()
g.addVertex('s')
g.addVertex('u')
g.addVertex('v')
g.addVertex('t')
g.addEdge('s', 'u', 20)
g.addEdge('s', 'v', 10)
g.addEdge('u', 'v', 30)
g.addEdge('u', 't', 10)
g.addEdge('v', 't', 20)
p = g.find_path('s', 't', [])
self.assertTrue(all(x in p for x in ['s', 'u', 't']))
def test_BFS(self):
ss_g = Graph()
for v in range(6):
ss_g.addVertex(v)
ss_g.addEdge(0, 1)
ss_g.addEdge(0, 4)
ss_g.addEdge(0, 5)
ss_g.addEdge(1, 2)
ss_g.addEdge(2, 3)
ss_g.addEdge(3, 4)
(discovered, parents) = ss_g.BFS(0)
expectePath = [0, 1, 2, 3]
vPath = []
ss_g.findPath(0, 3, parents, vPath)
for (x, y) in zip(expectePath, vPath):
self.assertEqual(x, y)
# add an edge between 4 and 3 to short cut for testing new path
ss_g.addEdge(4, 3)
(discovered, parents) = ss_g.BFS(0)
expectePath = [0, 4, 3]
vPath = []
ss_g.findPath(0, 3, parents, vPath)
for (x, y) in zip(expectePath, vPath):
self.assertEqual(x, y)
def testIsConnected(self):
self.assertTrue(self.g.isConnected())
self.g.addVertex(10)
self.assertFalse(self.g.isConnected())
"""
g = { "a" : ["d"],
"b" : ["c"],
"c" : ["b", "c", "d", "e"],
"d" : ["a", "c"],
"e" : ["c"],
"f" : []
}
"""
g = Graph()
vertices = ['a', 'b', 'c', 'd', 'e', 'f']
for v in vertices:
g.addVertex(v)
g.addEdge('a', 'd')
g.addEdge('b', 'c')
g.addEdge('c', 'd')
g.addEdge('c', 'e')
self.assertFalse(g.isConnected('a'))
"""
g2 = {
"a" : ["d","f"],
"b" : ["c"],
"c" : ["b", "c", "d", "e"],
"d" : ["a", "c"],
"e" : ["c"],
"f" : ["a"]
}
"""
g2 = Graph()
vertices = ['a', 'b', 'c', 'd', 'e', 'f']
for v in vertices:
g2.addVertex(v)
g2.addEdge('a', 'd')
g2.addEdge('a', 'f')
g2.addEdge('b', 'c')
g2.addEdge('c', 'b')
g2.addEdge('c', 'd')
g2.addEdge('d', 'a')
g2.addEdge('d', 'c')
g2.addEdge('c', 'e')
g2.addEdge('e', 'c')
g2.addEdge('f', 'a')
self.assertTrue(g2.isConnected('a'))
"""
g3 = {
"a" : ["d","f"],
"b" : ["c","b"],
"c" : ["b", "c", "d", "e"],
"d" : ["a", "c"],
"e" : ["c"],
"f" : ["a"]
}
"""
g3 = Graph()
vertices = ['a', 'b', 'c', 'd', 'e', 'f']
for v in vertices:
g3.addVertex(v)
g3.addEdge('a', 'd')
g3.addEdge('a', 'f')
g3.addEdge('b', 'c')
g3.addEdge('b', 'b')
g3.addEdge('c', 'b')
g3.addEdge('c', 'c')
g3.addEdge('c', 'd')
g3.addEdge('c', 'e')
g3.addEdge('d', 'a')
g3.addEdge('d', 'c')
g3.addEdge('e', 'c')
g3.addEdge('f', 'a')
self.assertTrue(g3.isConnected('a'))
class Graph(gtk.ScrolledWindow):
def __init__(self, builder, changed_method):
gtk.ScrolledWindow.__init__(self)
self.set_policy(gtk.POLICY_AUTOMATIC, gtk.POLICY_AUTOMATIC)
self.builder = builder
self.event_box = EventBox()
self.event_box.add_events(gtk.gdk.BUTTON_PRESS_MASK)
self.event_box.add_events(gtk.gdk.BUTTON_RELEASE_MASK)
self.event_box.add_events(gtk.gdk.MOTION_NOTIFY)
self.event_box.add_events(gtk.gdk.BUTTON1_MOTION_MASK)
self.event_box.add_events(gtk.gdk.KEY_PRESS_MASK)
self.event_box.set_events(gtk.gdk.POINTER_MOTION_MASK | gtk.gdk.POINTER_MOTION_HINT_MASK)
self.event_box.connect('motion-notify-event', self.mouse_motion)
self.event_box.connect('button-press-event', self.mouse_press)
self.event_box.connect('button-release-event', self.mouse_release)
self.event_box.connect('scroll-event', self.mouse_scroll)
self.action = None
self.menu = None
self.box = None
self.last_vertex_clicked = None
self.last_position_clicked = None
self.box_selecting = None
self.changed = False
self.changed_method = changed_method
self.graph = GraphController()
self.area = GraphArea(self.graph)
self.event_box.add(self.area)
self.add_with_viewport(self.event_box)
self.area.show()
self.event_box.show()
self.show()
# To UNDO and REDO actions
self.states = []
self.state_index = None
self.add_state()
# Algorithm stuff
self.algorithm_runner = None
self.algorithm_playing = None
self.algorithm_paused = None
self.algorithm_states = []
def centralize_scroll(self, position=None):
"""Put both scrolls in center"""
vadj = self.get_vadjustment()
hadj = self.get_hadjustment()
if not position:
position = [(vadj.upper / 2), (hadj.upper / 2)]
print([int(x) for x in position])
hadj.set_value(position[0] - (hadj.page_size / 2))
vadj.set_value(position[1] - (vadj.page_size / 2))
def zoom_in(self, center=None):
if self.area.zoom < 1.7:
self.area.zoom *= 1.1
self.do_zoom(lambda v: v * 1.1, center)
def zoom_out(self, center=None):
if self.area.zoom > 0.2:
self.area.zoom /= 1.1
self.do_zoom(lambda v: v / 1.1, center)
def zoom_default(self):
old = self.area.zoom
self.area.zoom = 1
self.do_zoom(lambda v: v / old)
def do_zoom(self, op, center=None):
width, height = self.area.get_size_request()
vadj = self.get_vadjustment()
hadj = self.get_hadjustment()
width *= self.area.zoom
height *= self.area.zoom
if not center:
offsetx, offsety = self.event_box.get_size_request()
x = (hadj.get_value() + offsetx / 2) * self.area.zoom
y = (vadj.get_value() + offsety / 2) * self.area.zoom
center = [x, y]
hadj.set_upper(width)
vadj.set_upper(height)
# self.centralize_scroll(center)
hadj.set_value(op(hadj.get_value()))
vadj.set_value(op(vadj.get_value()))
self.area.queue_draw()
def mouse_scroll(self, widget, event):
width, height = self.area.get_size_request()
vadj = self.get_vadjustment()
hadj = self.get_hadjustment()
if not (event.state & gtk.gdk.CONTROL_MASK):
return
center = [v / self.area.zoom for v in event.get_coords()]
if event.direction == gtk.gdk.SCROLL_UP:
self.zoom_in(center)
elif event.direction == gtk.gdk.SCROLL_DOWN:
self.zoom_out(center)
width, height = self.area.get_size_request()
vadj = self.get_vadjustment()
hadj = self.get_hadjustment()
def set_changed(self, value):
if self.changed != value:
self.changed = value
self.changed_method(self)
def add_vertex(self):
self.graph.add_vertex(self.last_position_clicked)
self.add_state()
self.action = None
self.area.queue_draw()
def remove_vertex(self):
to_be_removed = list(self.graph.selected_vertices())
list(map(lambda vertex: self.graph.remove_vertex(vertex), to_be_removed))
self.add_state()
self.action = None
self.area.queue_draw()
def edit_vertex(self):
if len(self.graph.selected_vertices()) == 1:
vertex = self.graph.selected_vertices()[0]
self.graph.deselect_vertex(vertex)
vertex_edit = Vertex(self, vertex)
def add_edge(self):
if len(self.graph.selected_vertices()) == 1:
vertex = self.graph.find_by_position(self.last_position_clicked)
if vertex != None and vertex != self.graph.selected_vertices()[0]:
self.graph.add_edge(self.graph.selected_vertices()[0], vertex)
self.graph.deselect_vertex(self.graph.selected_vertices()[0])
self.add_state()
self.action = None
self.area.queue_draw()
return True
if len(self.graph.selected_vertices()) > 1:
for i in range(len(self.graph.selected_vertices())):
for j in range(i, len(self.graph.selected_vertices())):
vertex1 = self.graph.selected_vertices()[i]
vertex2 = self.graph.selected_vertices()[j]
if vertex1 != vertex2:
self.graph.add_edge(vertex1, vertex2)
if self.graph.directed:
self.graph.add_edge(vertex2, vertex1)
selected_vertices = list(self.graph.selected_vertices())
if len(selected_vertices):
self.graph.deselect_all()
self.add_state()
for vertex in selected_vertices:
self.graph.select_vertex(vertex)
self.action = None
self.area.queue_draw()
return True
self.action = "add_edge"
return False
def remove_edge(self):
# TODO - Handle multiple edges
if len(self.graph.selected_vertices()) == 1:
vertex = self.graph.find_by_position(self.last_position_clicked)
if vertex != None:
edge = self.graph.find_edge(self.graph.selected_vertices()[0], vertex)
if len(edge) > 0:
self.graph.remove_edge(edge[0])
self.graph.deselect_vertex(self.graph.selected_vertices()[0])
self.add_state()
self.action = None
self.area.queue_draw()
return True
elif len(self.graph.selected_vertices()) > 1:
for vertex1 in self.graph.selected_vertices():
for vertex2 in self.graph.selected_vertices():
if vertex1 != vertex2:
edge = self.graph.find_edge(vertex1, vertex2)
if len(edge) > 0:
self.graph.remove_edge(edge[0])
self.graph.deselect_all()
self.add_state()
self.action = None
self.area.queue_draw()
return True
return False
def edit_edge(self):
# TODO - Handle multiple edges
if len(self.graph.selected_vertices()) == 2:
v1 = self.graph.selected_vertices()[0]
v2 = self.graph.selected_vertices()[1]
edge = self.graph.find_edge(v1, v2)
self.graph.deselect_vertex(v1)
self.graph.deselect_vertex(v2)
# TODO: This only works for 1 edge. 0 or more than 1 edges: fail.
edge_edit = Edge(self, edge[0])
def select_area(self, event, area):
if not area: return
x, y, w, h = area
vertices = self.graph.find_in_area(x, y, w, h)
from gtk.gdk import CONTROL_MASK, SHIFT_MASK
if not (event.state & CONTROL_MASK or event.state & SHIFT_MASK):
self.graph.deselect_all()
method = self.graph.select_vertex
if (event.state & CONTROL_MASK):
method = self.graph.toggle_vertex_selection
list(map(lambda vertex: method(vertex), vertices))
def select_vertex(self, event):
vertex = self.graph.find_by_position(self.last_position_clicked)
from gtk.gdk import CONTROL_MASK, SHIFT_MASK
if not (event.state & CONTROL_MASK or event.state & SHIFT_MASK) and (len(self.graph.selected_vertices()) > 0):
if not vertex or not vertex.selected:
self.graph.deselect_all()
if vertex:
if vertex.selected and (event.state & CONTROL_MASK or event.state & SHIFT_MASK):
self.graph.deselect_vertex(vertex)
else:
self.graph.select_vertex(vertex)
self.last_vertex_clicked = vertex
else:
self.box_selecting = self.last_position_clicked
self.action = None
def __block_event_box(self):
if self.algorithm_runner:
self.event_box.handler_block_by_func(self.mouse_motion)
self.event_box.handler_block_by_func(self.mouse_press)
self.event_box.handler_block_by_func(self.mouse_release)
self.event_box.handler_block_by_func(self.mouse_scroll)
else:
self.event_box.handler_unblock_by_func(self.mouse_motion)
self.event_box.handler_unblock_by_func(self.mouse_press)
self.event_box.handler_unblock_by_func(self.mouse_release)
self.event_box.handler_unblock_by_func(self.mouse_scroll)
def algorithm_play(self):
if self.algorithm_runner:
self.graph.deselect_all()
self.algorithm_playing = True
if self.algorithm_paused:
self.algorithm_paused = False
else:
self.algorithm_runner.play()
self.queue_draw()
gobject.timeout_add(500, self.algorithm_next, True)
def algorithm_pause(self):
if self.algorithm_runner:
if self.algorithm_playing:
self.algorithm_runner.pause()
self.algorithm_playing = False
self.algorithm_paused = True
def algorithm_load(self, Algorithm):
if self.algorithm_runner:
self.algorithm_runner.stop()
self.algorithm_runner = Algorithm(self)
self.__block_event_box()
def algorithm_next(self, auto=False):
if self.algorithm_runner:
if auto and not self.algorithm_paused:
next(self.algorithm_runner)
self.queue_draw()
if self.algorithm_playing and self.algorithm_runner.is_alive():
return True
else:
if not self.algorithm_playing or not self.algorithm_runner.is_alive():
next(self.algorithm_runner)
self.queue_draw()
self.algorithm_playing = False
return False
def algorithm_prev(self):
if self.algorithm_runner:
self.algorithm_runner.prev()
self.queue_draw()
if self.algorithm_playing:
self.algorithm_playing = False
self.algorithm_prev()
def algorithm_stop(self):
if self.algorithm_runner:
self.algorithm_runner.stop()
self.algorithm_runner = None
self.queue_draw()
self.__block_event_box()
def algorithm_layout(self):
self.graph.layout_graph(50)
self.queue_draw()
def add_state(self):
state = pickle.dumps(self.graph)
if not self.state_index:
self.state_index = 0
for place in ["menu_edit_", "toolbutton_"]:
self.builder.get_object(place + "undo").set_sensitive(True)
if (self.state_index < len(self.states) - 1):
self.states = self.states[:self.state_index + 1]
for place in ["menu_edit_", "toolbutton_"]:
self.builder.get_object(place + "redo").set_sensitive(False)
self.states.append(state)
if len(self.states) == 1:
self.state_index = 0
else:
self.state_index += 1
def prev_state(self):
if (self.state_index > 0 and len(self.states) > 0):
self.state_index -= 1
graph = self.states[self.state_index]
state = pickle.loads(graph)
if self.state_index == 0:
for place in ["menu_edit_", "toolbutton_"]:
self.builder.get_object(place + "undo").set_sensitive(False)
if len(self.states) > 1:
for place in ["menu_edit_", "toolbutton_"]:
self.builder.get_object(place + "redo").set_sensitive(True)
return state
return None
def next_state(self):
if (self.state_index < len(self.states) - 1):
self.state_index += 1
graph = self.states[self.state_index]
state = pickle.loads(graph)
if self.state_index == len(self.states) - 1:
for place in ["menu_edit_", "toolbutton_"]:
self.builder.get_object(place + "redo").set_sensitive(False)
if len(self.states) > 1:
for place in ["menu_edit_", "toolbutton_"]:
self.builder.get_object(place + "undo").set_sensitive(True)
return state
return None
def undo(self):
graph = self.prev_state()
if graph:
graph.path = self.graph.path
graph.title = self.graph.title
self.area.graph = graph
self.graph = graph
self.set_changed(True)
self.queue_draw()
def redo(self):
graph = self.next_state()
if graph:
self.area.graph = graph
self.graph = graph
self.set_changed(True)
self.queue_draw()
def mouse_press(self, widget, event):
self.last_position_clicked = [v / self.area.zoom for v in event.get_coords()]
if event.button == 1:
if self.action != None:
self.set_changed(True)
if self.action == None:
self.select_vertex(event)
if event.type == gtk.gdk._2BUTTON_PRESS:
self.edit_vertex()
elif self.action == "add_vertex":
self.add_vertex()
elif self.action == "remove_vertex":
self.remove_vertex()
elif self.action == "add_edge":
if not self.add_edge():
self.select_vertex(event)
elif self.action == "remove_edge":
if not self.remove_edge():
self.select_vertex(event)
elif event.button == 2:
if self.action != None:
self.set_changed(True)
if self.action == None:
vertex = self.graph.find_by_position(self.last_position_clicked)
if vertex:
self.select_vertex(event)
self.action = "add_edge"
else:
self.add_vertex()
elif self.action == "add_edge":
if not self.add_edge():
self.select_vertex(event)
elif event.button == 3:
self.right_click_menu(event)
self.area.queue_draw()
self.mouse_motion(widget, event)
def right_click_menu(self, event):
vertex = self.graph.find_by_position(self.last_position_clicked)
if len(self.graph.selected_vertices()) == 0 and vertex:
self.graph.select_vertex(vertex)
def execute_action(event, action):
action()
if not self.menu:
self.menu = gtk.Menu()
self.menu_add_edge = gtk.MenuItem(_("_Add edge"))
self.menu_remove_edge = gtk.MenuItem(_("_Remove edge"))
self.menu_add_vertex = gtk.MenuItem(_("_Add vertex"))
self.menu_remove_vertex = gtk.MenuItem(_("_Remove vertex"))
self.menu_edit_vertex = gtk.MenuItem(_("_Edit vertex settings"))
self.menu_edit_edge = gtk.MenuItem(_("_Edit edge settings"))
self.menu_add_edge.connect("activate", execute_action, self.add_edge)
self.menu_remove_edge.connect("activate", execute_action, self.remove_edge)
self.menu_add_vertex.connect("activate", execute_action, self.add_vertex)
self.menu_remove_vertex.connect("activate", execute_action, self.remove_vertex)
self.menu_edit_vertex.connect("activate", execute_action, self.edit_vertex)
self.menu_edit_edge.connect("activate", execute_action, self.edit_edge)
self.menu.append(self.menu_add_vertex)
self.menu.append(self.menu_remove_vertex)
self.menu.append(gtk.SeparatorMenuItem())
self.menu.append(self.menu_add_edge)
self.menu.append(self.menu_remove_edge)
self.menu.append(gtk.SeparatorMenuItem())
self.menu.append(self.menu_edit_vertex)
self.menu.append(self.menu_edit_edge)
if vertex:
self.menu_add_vertex.set_sensitive(False)
self.menu_edit_vertex.set_sensitive(True)
self.menu_remove_vertex.set_sensitive(True)
self.menu_add_edge.set_sensitive(True)
self.menu_remove_edge.set_sensitive(True)
self.menu_edit_edge.set_sensitive(False)
if len(self.graph.selected_vertices()) == 2:
self.menu_edit_edge.set_sensitive(True)
else:
self.menu_add_vertex.set_sensitive(True)
self.menu_edit_vertex.set_sensitive(False)
self.menu_remove_vertex.set_sensitive(False)
self.menu_add_edge.set_sensitive(len(self.graph.selected_vertices()) > 0)
self.menu_remove_edge.set_sensitive(False)
self.menu_edit_edge.set_sensitive(False)
self.menu.show_all()
self.menu.popup(None, None, None, event.button, event.time)
def mouse_release(self, widget, event):
selected_vertices = list(self.graph.selected_vertices())
if len(selected_vertices) > 0 and self.last_vertex_clicked:
self.graph.deselect_all()
self.add_state()
for vertex in selected_vertices:
self.graph.select_vertex(vertex)
self.last_vertex_clicked = None
self.box_selecting = None
self.select_area(event, self.area.selected_area)
self.area.selected_area = None
self.area.queue_draw()
def mouse_motion(self, widget, event):
coords = [v / self.area.zoom for v in event.get_coords()]
if self.box_selecting:
x, y = self.box_selecting
w, h = [e - s for e, s in zip(coords, self.box_selecting)]
self.area.selected_area = (x, y, w, h)
self.area.queue_draw()
return
selected_vertices = self.graph.selected_vertices()
if self.action == "add_edge" and len(selected_vertices) == 1:
start = selected_vertices[0].position
end = coords
self.area.adding_edge = (start, end)
self.area.queue_draw()
else:
self.area.adding_edge = None
if len(selected_vertices) > 0 and self.last_vertex_clicked:
end_position = coords
start_position = self.last_vertex_clicked.position
delta_x = end_position[0] - start_position[0]
delta_y = end_position[1] - start_position[1]
self.set_changed(True)
for vertex in selected_vertices:
new_position = [vertex.position[0] + delta_x, vertex.position[1] + delta_y]
vertex.position = new_position
self.area.queue_draw()
def testKrushkals(self):
expectedMST = [(2, 4, 1), (3, 4, 1), (4, 6, 2), (1, 2, 3), (0, 2, 4), (4, 5, 5)]
actualTree = self.g.mspKrushkals()
for edge in expectedMST:
self.assertTrue(edge in actualTree)
# second example
grph = Graph()
for v in range(7):
grph.addVertex(v)
grph.addEdge(0, 1, 5)
grph.addEdge(0, 2, 7)
grph.addEdge(1, 2, 9)
grph.addEdge(1, 3, 6)
grph.addEdge(1, 5, 15)
grph.addEdge(2, 4, 8)
grph.addEdge(2, 5, 7)
grph.addEdge(3, 5, 8)
grph.addEdge(3, 6, 11)
grph.addEdge(4, 5, 5)
grph.addEdge(5, 6, 9)
expTree = [(0, 1, 5), (4, 5, 5), (1, 3, 6), (0, 2, 7), (2, 5, 7), (5, 6, 9)]
actualTree = grph.mspKrushkals()
for edge in expTree:
self.assertTrue(edge in actualTree)
def get_graph(self, addr):
from capstone import CS_OP_IMM, CS_ARCH_MIPS
ARCH_UTILS = self.load_arch_module().utils
curr = self.lazy_disasm(addr)
if curr == None:
return None
gph = Graph(self, addr)
rest = []
start = time.clock()
prefetch = None
# WARNING: this assume that on every architectures the jump
# address is the last operand (operands[-1])
while 1:
if not gph.exists(curr):
if self.arch == CS_ARCH_MIPS:
prefetch = self.__prefetch_inst(curr)
if ARCH_UTILS.is_uncond_jump(curr) and len(curr.operands) > 0:
if curr.operands[-1].type == CS_OP_IMM:
addr = curr.operands[-1].value.imm
nxt = self.lazy_disasm(addr)
gph.set_next(curr, nxt, prefetch)
rest.append(nxt.address)
else:
# Can't interpret jmp ADDR|reg
gph.add_node(curr, prefetch)
gph.uncond_jumps_set.add(curr.address)
elif ARCH_UTILS.is_cond_jump(curr) and len(curr.operands) > 0:
if curr.operands[-1].type == CS_OP_IMM:
nxt_jump = self.lazy_disasm(curr.operands[-1].value.imm)
if self.arch == CS_ARCH_MIPS:
direct_nxt = \
self.lazy_disasm(prefetch.address + prefetch.size)
else:
direct_nxt = \
self.lazy_disasm(curr.address + curr.size)
gph.set_cond_next(curr, nxt_jump, direct_nxt, prefetch)
rest.append(nxt_jump.address)
rest.append(direct_nxt.address)
else:
# Can't interpret jmp ADDR|reg
gph.add_node(curr, prefetch)
gph.cond_jumps_set.add(curr.address)
elif ARCH_UTILS.is_ret(curr):
gph.add_node(curr, prefetch)
else:
try:
nxt = self.lazy_disasm(curr.address + curr.size)
gph.set_next(curr, nxt)
rest.append(nxt.address)
except:
gph.add_node(curr)
pass
try:
curr = self.lazy_disasm(rest.pop())
except IndexError:
break
if self.binary.type == T_BIN_PE:
self.binary.pe_reverse_stripped_symbols(self)
elapsed = time.clock()
elapsed = elapsed - start
debug__("Graph built in %fs" % elapsed)
return gph
class GraphTests(unittest.TestCase):
def setUp(self):
self.g = Graph()
for v in range(7):
self.g.addVertex(v)
self.g.addEdge(0, 1, 6)
self.g.addEdge(0, 2, 4)
self.g.addEdge(1, 2, 3)
self.g.addEdge(1, 5, 7)
self.g.addEdge(2, 3, 9)
self.g.addEdge(2, 4, 1)
self.g.addEdge(3, 4, 1)
self.g.addEdge(4, 5, 5)
self.g.addEdge(4, 6, 2)
def tearDown(self):
self.g = None
def testBasic(self):
for v in self.g.getVertices():
self.assertTrue(v in range(7))
def testNeighbours(self):
zero_s_nbrs = [1, 2]
for v in zero_s_nbrs:
self.assertTrue(v in self.g.getNeighbours(0))
one_s_nbrs = [2, 5]
for v in one_s_nbrs:
self.assertTrue(v in self.g.getNeighbours(1))
two_s_nbrs = [3, 4]
for v in two_s_nbrs:
self.assertTrue(v in self.g.getNeighbours(2))
three_s_nbrs = [4]
for v in three_s_nbrs:
self.assertTrue(v in self.g.getNeighbours(3))
four_s_nbrs = [5, 6]
for v in four_s_nbrs:
self.assertTrue(v in self.g.getNeighbours(4))
def testEdges(self):
expected_edges = [
(0, 1, 6),
(0, 2, 4),
(1, 2, 3),
(1, 5, 7),
(2, 3, 9),
(2, 4, 1),
(3, 4, 1),
(4, 5, 5),
(4, 6, 2)
]
edges = self.g.getEdges()
for edge in expected_edges:
self.assertTrue(edge in edges)
def testIsolatedVertex(self):
self.g.addVertex(10)
isolated = self.g.findIsolated()
self.assertTrue(10 in isolated)
def testGetPath(self):
path = self.g.getPath(0, 6, [])
self.assertEquals(path, [0, 1, 2, 3, 4, 6])
path = self.g.getPath(0, 10, [])
self.assertEquals(None, path)
def testGetAllPaths(self):
expectedPaths = [[0, 1, 2, 3, 4, 6],
[0, 1, 2, 4, 6],
[0, 2, 3, 4, 6],
[0, 2, 4, 6]
]
paths = self.g.getAllPaths(0, 6, [])
for path in expectedPaths:
self.assertTrue(path in paths)
def testInDegree(self):
self.g.addVertex(10)
expectedDegrees = [(0, 0), # 0 vertex has 0 edges going to it
(1, 1),
(2, 2),
(3, 1),
(4, 2),
(5, 2),
(6, 1),
(10, 0)
]
for (vertex, inDegree) in expectedDegrees:
self.assertEqual(self.g.inDegree(vertex), inDegree)
def testOutDegree(self):
self.g.addVertex(10)
expectedDegrees = [(0, 2), # 0 vertex has 2 edges going from it
(1, 2),
(2, 2),
(3, 1),
(4, 2),
(5, 0),
(6, 0),
(10, 0)
]
for (vertex, outDegree) in expectedDegrees:
self.assertEqual(self.g.outDegree(vertex), outDegree)
def testDegree(self):
self.g.addVertex(10)
expectedDegrees = [(0, 2), # 0 vertex has 2 edges
(1, 3),
(2, 4),
(3, 2),
(4, 4),
(5, 2),
(6, 1),
(10, 0)
]
for (vertex, degree) in expectedDegrees:
self.assertEqual(self.g.getDegree(vertex), degree)
def testDegreeSumFormula(self):
self.assertTrue(self.g.verifyDegreeSumFormula())
def testMinDegreeOfGraphV(self):
self.assertEqual(self.g.delta(), 1)
#add a isolated vertex and check the degree 0
self.g.addVertex(10)
self.assertEqual(self.g.delta(), 0)
def testMaxDegreeOfGraphV(self):
self.assertEqual(self.g.Delta(), 4)
def testDegreeSequence(self):
expected = (4, 4, 3, 2, 2, 2, 1)
self.assertEqual(self.g.degreeSequence(), expected)
def testErdosGallaiTheorem(self):
self.assertTrue(Graph.isGraphicSequence([2, 2, 2, 2, 1, 1]))
self.assertTrue(Graph.isGraphicSequence([3, 3, 3, 3, 3, 3]))
self.assertTrue(Graph.isGraphicSequence([3, 3, 2, 1, 1]))
self.assertFalse(Graph.isGraphicSequence([4, 3, 2, 2, 2, 1, 1]))
self.assertFalse(Graph.isGraphicSequence([6, 6, 5, 4, 4, 2, 1]))
self.assertFalse(Graph.isGraphicSequence([3, 3, 3, 1]))
def testHavelHakimiAlgorithm(self):
self.assertTrue(Graph.isGraphicSequenceIterative([2, 2, 2, 2, 1, 1]))
self.assertTrue(Graph.isGraphicSequenceIterative([3, 3, 3, 3, 3, 3]))
self.assertTrue(Graph.isGraphicSequenceIterative([3, 3, 2, 1, 1]))
self.assertFalse(Graph.isGraphicSequenceIterative([4, 3, 2, 2, 2, 1, 1]))
self.assertFalse(Graph.isGraphicSequenceIterative([6, 6, 5, 4, 4, 2, 1]))
self.assertFalse(Graph.isGraphicSequenceIterative([3, 3, 3, 1]))
def testDensity(self):
g = Graph()
vertices = ['a', 'b', 'c', 'd', 'e', 'f']
for v in vertices:
g.addVertex(v)
"""
g = { "a" : ["d","f"],
"b" : ["c","b"],
"c" : ["b", "c", "d", "e"],
"d" : ["a", "c"],
"e" : ["c"],
"f" : ["a"]
}
"""
g.addEdge('a', 'd')
g.addEdge('a', 'f')
g.addEdge('b', 'c')
g.addEdge('b', 'b')
g.addEdge('c', 'c')
g.addEdge('c', 'd')
g.addEdge('c', 'e')
self.assertAlmostEqual(0.466666666667, g.density(), places=7)
"""
complete_graph = {
"a" : ["b","c"],
"b" : ["a","c"],
"c" : ["a","b"]
}
"""
complete_graph = Graph()
vertices = ['a', 'b', 'c']
for v in vertices:
complete_graph.addVertex(v)
complete_graph.addEdge('a', 'b')
complete_graph.addEdge('a', 'c')
complete_graph.addEdge('b', 'c')
self.assertEqual(1.0, complete_graph.density())
"""
isolated_graph = {
"a" : [],
"b" : [],
"c" : []
}
"""
isolated_graph = Graph()
vertices = ['a', 'b', 'c']
for v in vertices:
isolated_graph.addVertex(v)
self.assertEqual(0.0, isolated_graph.density())
def testIsConnected(self):
self.assertTrue(self.g.isConnected())
self.g.addVertex(10)
self.assertFalse(self.g.isConnected())
"""
g = { "a" : ["d"],
"b" : ["c"],
"c" : ["b", "c", "d", "e"],
"d" : ["a", "c"],
"e" : ["c"],
"f" : []
}
"""
g = Graph()
vertices = ['a', 'b', 'c', 'd', 'e', 'f']
for v in vertices:
g.addVertex(v)
g.addEdge('a', 'd')
g.addEdge('b', 'c')
g.addEdge('c', 'd')
g.addEdge('c', 'e')
self.assertFalse(g.isConnected('a'))
"""
g2 = {
"a" : ["d","f"],
"b" : ["c"],
"c" : ["b", "c", "d", "e"],
"d" : ["a", "c"],
"e" : ["c"],
"f" : ["a"]
}
"""
g2 = Graph()
vertices = ['a', 'b', 'c', 'd', 'e', 'f']
for v in vertices:
g2.addVertex(v)
g2.addEdge('a', 'd')
g2.addEdge('a', 'f')
g2.addEdge('b', 'c')
g2.addEdge('c', 'b')
g2.addEdge('c', 'd')
g2.addEdge('d', 'a')
g2.addEdge('d', 'c')
g2.addEdge('c', 'e')
g2.addEdge('e', 'c')
g2.addEdge('f', 'a')
self.assertTrue(g2.isConnected('a'))
"""
g3 = {
"a" : ["d","f"],
"b" : ["c","b"],
"c" : ["b", "c", "d", "e"],
"d" : ["a", "c"],
"e" : ["c"],
"f" : ["a"]
}
"""
g3 = Graph()
vertices = ['a', 'b', 'c', 'd', 'e', 'f']
for v in vertices:
g3.addVertex(v)
g3.addEdge('a', 'd')
g3.addEdge('a', 'f')
g3.addEdge('b', 'c')
g3.addEdge('b', 'b')
g3.addEdge('c', 'b')
g3.addEdge('c', 'c')
g3.addEdge('c', 'd')
g3.addEdge('c', 'e')
g3.addEdge('d', 'a')
g3.addEdge('d', 'c')
g3.addEdge('e', 'c')
g3.addEdge('f', 'a')
self.assertTrue(g3.isConnected('a'))
def testCLRDfs(self):
paths = self.g.CLR_Dfs()
self.assertEqual(len(paths), 1)
self.g.addEdge(1, 0, 2) # add a edge from 1 to 0 to make possible paths 2
paths = self.g.CLR_Dfs()
self.assertEqual(len(paths), 2)
def test_BFS(self):
ss_g = Graph()
for v in range(6):
ss_g.addVertex(v)
ss_g.addEdge(0, 1)
ss_g.addEdge(0, 4)
ss_g.addEdge(0, 5)
ss_g.addEdge(1, 2)
ss_g.addEdge(2, 3)
ss_g.addEdge(3, 4)
(discovered, parents) = ss_g.BFS(0)
expectePath = [0, 1, 2, 3]
vPath = []
ss_g.findPath(0, 3, parents, vPath)
for (x, y) in zip(expectePath, vPath):
self.assertEqual(x, y)
# add an edge between 4 and 3 to short cut for testing new path
ss_g.addEdge(4, 3)
(discovered, parents) = ss_g.BFS(0)
expectePath = [0, 4, 3]
vPath = []
ss_g.findPath(0, 3, parents, vPath)
for (x, y) in zip(expectePath, vPath):
self.assertEqual(x, y)
def testFindPath(self):
g = Graph()
g.addVertex('s')
g.addVertex('u')
g.addVertex('v')
g.addVertex('t')
g.addEdge('s', 'u', 20)
g.addEdge('s', 'v', 10)
g.addEdge('u', 'v', 30)
g.addEdge('u', 't', 10)
g.addEdge('v', 't', 20)
p = g.find_path('s', 't', [])
self.assertTrue(all(x in p for x in ['s', 'u', 't']))
def testFindAllPaths(self):
g = Graph()
g.addVertex('s')
g.addVertex('u')
g.addVertex('v')
g.addVertex('t')
g.addEdge('s', 'u', 20)
g.addEdge('s', 'v', 10)
g.addEdge('u', 'v', 30)
g.addEdge('u', 't', 10)
g.addEdge('v', 't', 20)
paths = g.find_all_paths('s', 't', [])
expectedPaths = [
['s', 'u', 't'],
['s', 'u', 'v', 't'],
['s', 'v', 't']
]
for path in expectedPaths:
self.assertTrue(path in paths)
def testFindShortestPath(self):
g = Graph()
g.addVertex('s')
g.addVertex('u')
g.addVertex('v')
g.addVertex('t')
g.addEdge('s', 'u', 20)
g.addEdge('s', 'v', 10)
g.addEdge('u', 'v', 30)
g.addEdge('u', 't', 10)
g.addEdge('v', 't', 20)
expectedPath = ['s', 'u', 't']
actualPath = g.find_shortest_path('s', 't', [])
for v in expectedPath:
self.assertTrue(v in actualPath)
def testPrims(self):
expectedMST = [(0, 2, 4), (2, 4, 1), (4, 3, 1), (4, 6, 2), (2, 1, 3), (4, 5, 5)]
actualMST = self.g.mspPrims()
for edge in expectedMST:
self.assertTrue(edge in actualMST)
# second example
grph = Graph()
for v in range(8):
grph.addVertex(v)
grph.addEdge(0, 1, 4)
grph.addEdge(0, 2, 6)
grph.addEdge(0, 3, 16)
grph.addEdge(1, 5, 24)
grph.addEdge(2, 5, 23)
grph.addEdge(2, 4, 5)
grph.addEdge(2, 3, 8)
grph.addEdge(3, 4, 10)
grph.addEdge(3, 7, 21)
grph.addEdge(4, 5, 18)
grph.addEdge(4, 6, 11)
grph.addEdge(4, 7, 14)
grph.addEdge(5, 6, 9)
grph.addEdge(6, 7, 7)
expMST = [(0, 1, 4), (0, 2, 6), (2, 4, 5), (2, 3, 8), (4, 6, 11), (6, 7, 7), (6, 5, 9)]
actualMST = grph.mspPrims()
for edge in expMST:
self.assertTrue(edge in actualMST)
# third example
grph = Graph()
for v in range(7):
grph.addVertex(v)
grph.addEdge(0, 1, 4)
grph.addEdge(0, 2, 8)
grph.addEdge(1, 2, 9)
grph.addEdge(1, 3, 8)
grph.addEdge(1, 4, 10)
grph.addEdge(2, 3, 2)
grph.addEdge(2, 5, 1)
grph.addEdge(3, 4, 7)
grph.addEdge(3, 5, 9)
grph.addEdge(4, 5, 5)
grph.addEdge(4, 6, 6)
grph.addEdge(5, 6, 2)
expMST = [(0, 1, 4), (0, 2, 8), (2, 5, 1), (2, 3, 2), (5, 6, 2), (5, 4, 5)]
actualMST = grph.mspPrims()
for edge in expMST:
self.assertTrue(edge in actualMST)
# fourth example
grph = Graph()
for v in range(6):
grph.addVertex(v)
grph.addEdge(0, 1, 2)
grph.addEdge(0, 2, 3)
grph.addEdge(1, 2, 6)
grph.addEdge(1, 3, 5)
grph.addEdge(1, 4, 3)
grph.addEdge(2, 4, 2)
grph.addEdge(3, 4, 1)
grph.addEdge(3, 5, 2)
grph.addEdge(4, 5, 4)
expMST = [(0, 1, 2), (0, 2, 3), (2, 4, 2), (4, 3, 1), (3, 5, 2)]
actualMST = grph.mspPrims()
for edge in expMST:
self.assertTrue(edge in actualMST)
def testKrushkals(self):
expectedMST = [(2, 4, 1), (3, 4, 1), (4, 6, 2), (1, 2, 3), (0, 2, 4), (4, 5, 5)]
actualTree = self.g.mspKrushkals()
for edge in expectedMST:
self.assertTrue(edge in actualTree)
# second example
grph = Graph()
for v in range(7):
grph.addVertex(v)
grph.addEdge(0, 1, 5)
grph.addEdge(0, 2, 7)
grph.addEdge(1, 2, 9)
grph.addEdge(1, 3, 6)
grph.addEdge(1, 5, 15)
grph.addEdge(2, 4, 8)
grph.addEdge(2, 5, 7)
grph.addEdge(3, 5, 8)
grph.addEdge(3, 6, 11)
grph.addEdge(4, 5, 5)
grph.addEdge(5, 6, 9)
expTree = [(0, 1, 5), (4, 5, 5), (1, 3, 6), (0, 2, 7), (2, 5, 7), (5, 6, 9)]
actualTree = grph.mspKrushkals()
for edge in expTree:
self.assertTrue(edge in actualTree)
def testFloyds(self):
expected = {
0: {0: 0, 1: 6, 2: 4, 3: 13, 4: 5, 5: 10, 6: 7 },
1: {0: float('inf'), 1: 0, 2: 3,
3: 12, 4: 4, 5: 7, 6: 6
},
2: {0: float('inf'), 1: float('inf'),
2: 0, 3: 9, 4: 1, 5: 6, 6: 3
},
3: {0: float('inf'), 1: float('inf'), 2: float('inf'),
3: 0, 4: 1, 5: 6, 6: 3
},
4: {0: float('inf'), 1: float('inf'), 2: float('inf'),
3: float('inf'), 4: 0, 5: 5, 6: 2
},
5: {0: float('inf'), 1: float('inf'), 2: float('inf'),
3: float('inf'), 4: float('inf'), 5: 0, 6: float('inf')
},
6: {0: float('inf'), 1: float('inf'), 2: float('inf'),
3: float('inf'), 4: float('inf'), 5: float('inf'), 6: 0
}
}
actual = self.g.floyds()
self.assertDictEqual(expected, actual) # handy
self.assertTrue(p==q for p, q in zip(expected.items(), actual.items())) #does the same
self.assertTrue(expected.items() == actual.items()) #does the same
"""
grph = {0: {0: 0, 1: 1, 2: 4},
1: {0: inf, 1: 0, 2: 2},
2: {0: inf, 1: inf, 2: 0}
}
"""
grph = Graph()
for v in range(3):
grph.addVertex(v)
grph.addEdge(0, 1, 1)
grph.addEdge(0, 2, 4)
grph.addEdge(1, 2, 2)
"""
{0: {0: 0, 1: 1, 2: 3},
1: {0: inf, 1: 0, 2: 2},
2: {0: inf, 1: inf, 2: 0}}
"""
expected = {0: {0: 0, 1: 1, 2: 3},
1: {0: float('inf'), 1: 0, 2: 2},
2: {0: float('inf'), 1: float('inf'), 2: 0}
}
actual = grph.floyds()
self.assertDictEqual(expected, actual) # handy
self.assertTrue(p==q for p, q in zip(expected.items(), actual.items())) #does the same
self.assertTrue(expected.items() == actual.items()) #does the same
def testReachability(self): #uses floyd's algorithm
expected = {
0: {0: True, 1: True, 2: True, 3: True, 4: True, 5: True, 6: True},
1: {0: False, 1: True, 2: True, 3: True, 4: True, 5: True, 6: True},
2: {0: False, 1: False, 2: True, 3: True, 4: True, 5: True, 6: True},
3: {0: False, 1: False, 2: False, 3: True, 4: True, 5: True, 6: True},
4: {0: False, 1: False, 2: False, 3: False, 4: True, 5: True, 6: True},
5: {0: False, 1: False, 2: False, 3: False, 4: False, 5: True, 6: False},
6: {0: False, 1: False, 2: False, 3: False, 4: False, 5: False, 6: True}
}
actual = self.g.reachability()
self.assertDictEqual(expected, actual)
def testPathRecoveryFloydWarshall(self): #ToDo:
expectedParentMap = {
0: {0: -1, 1: 0, 2: 0, 3: 2, 4: 2, 5: 4, 6: 4},
1: {0: -1, 1: -1, 2: 1, 3: 2, 4: 2, 5: 1, 6: 4},
2: {0: -1, 1: -1, 2: -1, 3: 2, 4: 2, 5: 4, 6: 4},
3: {0: -1, 1: -1, 2: -1, 3: -1, 4: 3, 5: 4, 6: 4},
4: {0: -1, 1: -1, 2: -1, 3: -1, 4: -1, 5: 4, 6: 4},
5: {0: -1, 1: -1, 2: -1, 3: -1, 4: -1, 5: -1, 6: -1},
6: {0: -1, 1: -1, 2: -1, 3: -1, 4: -1, 5: -1, 6: -1}
}
actualMap = self.g.pathRecoveryFloydWarshall()
self.assertDictEqual(expectedParentMap, actualMap)
path = []
self.g.getFloydPath(actualMap, 0, 6, path)
self.assertEqual([6, 4, 2, 0], path)
path = []
self.g.getFloydPath(actualMap, 0, 5, path) #always shortest path
self.assertEqual([5, 4, 2, 0], path)
path = []
self.g.getFloydPath(actualMap, 0, 4, path) #always shortest path
self.assertEqual([4, 2, 0], path)
path = []
self.g.getFloydPath(actualMap, 0, 3, path) #always shortest path
self.assertEqual([3, 2, 0], path)
path = []
self.g.getFloydPath(actualMap, 0, 2, path) #always shortest path
self.assertEqual([2, 0], path)
path = []
self.g.getFloydPath(actualMap, 0, 1, path) #always shortest path
self.assertEqual([1, 0], path)
path = []
self.g.getFloydPath(actualMap, 1, 5, path) #always shortest path
self.assertEqual([5, 1], path)
path = []
self.g.getFloydPath(actualMap, 1, 6, path) #always shortest path
self.assertEqual([6, 4, 2, 1], path)
path = []
self.g.getFloydPath(actualMap, 2, 6, path) #always shortest path
self.assertEqual([6, 4, 2], path)
path = []
self.g.getFloydPath(actualMap, 2, 5, path) #always shortest path
self.assertEqual([5, 4, 2], path)
def testDijkstra(self):
g = Graph()
g.addVertex('s')
g.addVertex('u')
g.addVertex('v')
g.addVertex('x')
g.addVertex('y')
g.addEdge('s', 'u', 10)
g.addEdge('s', 'x', 5)
g.addEdge('u', 'v', 1)
g.addEdge('u', 'x', 2)
g.addEdge('v', 'y', 4)
g.addEdge('x', 'u', 3)
g.addEdge('x', 'v', 9)
g.addEdge('x', 'y', 2)
g.addEdge('y', 's', 7)
g.addEdge('y', 'v', 6)
expected = ['y', 's']
actual = g.shortestPathDijkstra('y', 's')
self.assertEqual(expected, actual)
expected = ['s', 'x', 'u', 'v']
actual = g.shortestPathDijkstra('s', 'v')
self.assertEqual(expected, actual)
g.updateEdge('s', 'u', 1)
expected = ['s', 'u', 'v']
actual = g.shortestPathDijkstra('s', 'v')
self.assertEqual(expected, actual)
def testTarjansSCC(self):
expected = [('G',), ('B',), ('E', 'F', 'D'), ('C',), ('A',)]
g = Graph()
g.addVertex('A')
g.addVertex('B')
g.addVertex('C')
g.addVertex('D')
g.addVertex('E')
g.addVertex('F')
g.addVertex('G')
g.addEdge('A', 'C', 1)
g.addEdge('A', 'E', 1)
g.addEdge('A', 'F', 1)
g.addEdge('B', 'G', 1)
g.addEdge('C', 'B', 1)
g.addEdge('C', 'D', 1)
g.addEdge('F', 'E', 1)
g.addEdge('D', 'F', 1)
g.addEdge('E', 'D', 1)
g.addEdge('E', 'G', 1)
self.assertEqual(expected, g.strongly_connected_components())
#case -2
expected = [(12, 11, 9, 10, 7, 8), (6, 3), (5, 4, 2), (1,)]
g2 = Graph()
for v in range(1, 13):
g2.addVertex(v)
g2.addEdge(1, 2, 1)
g2.addEdge(2, 3, 1)
g2.addEdge(2, 4, 1)
g2.addEdge(2, 5, 1)
g2.addEdge(3, 6, 1)
g2.addEdge(4, 5, 1)
g2.addEdge(4, 7, 1)
g2.addEdge(5, 2, 1)
g2.addEdge(5, 6, 1)
g2.addEdge(5, 7, 1)
g2.addEdge(6, 3, 1)
g2.addEdge(6, 8, 1)
g2.addEdge(7, 8, 1)
g2.addEdge(7, 10, 1)
g2.addEdge(8, 7, 1)
g2.addEdge(9, 7, 1)
g2.addEdge(10, 9, 1)
g2.addEdge(10, 11, 1)
g2.addEdge(11, 12, 1)
g2.addEdge(12, 10, 1)
self.assertEqual(expected, g2.strongly_connected_components())
"""
def get_graph(self, entry_addr):
from capstone import CS_OP_IMM, CS_ARCH_MIPS
ARCH_UTILS = self.load_arch_module().utils
gph = Graph(self, entry_addr)
stack = [entry_addr]
start = time()
prefetch = None
# WARNING: this assume that on every architectures the jump
# address is the last operand (operands[-1])
# Here each instruction is a node. Blocks will be created in the
# function __simplify.
while stack:
ad = stack.pop()
inst = self.lazy_disasm(ad)
if inst is None:
# Remove all previous instructions which have a link
# to this instruction.
if ad in gph.link_in:
for i in gph.link_in[ad]:
gph.link_out[i].remove(ad)
for i in gph.link_in[ad]:
if not gph.link_out[i]:
del gph.link_out[i]
del gph.link_in[ad]
continue
if gph.exists(inst):
continue
if ARCH_UTILS.is_ret(inst):
if self.arch == CS_ARCH_MIPS:
prefetch = self.__prefetch_inst(inst)
gph.new_node(inst, prefetch, None)
elif ARCH_UTILS.is_uncond_jump(inst):
if self.arch == CS_ARCH_MIPS:
prefetch = self.__prefetch_inst(inst)
gph.uncond_jumps_set.add(ad)
op = inst.operands[-1]
if op.type == CS_OP_IMM:
nxt = op.value.imm
stack.append(nxt)
gph.new_node(inst, prefetch, [nxt])
else:
if inst.address in self.jmptables:
table = self.jmptables[inst.address].table
stack += table
gph.new_node(inst, prefetch, table)
else:
# Can't interpret jmp ADDR|reg
gph.new_node(inst, prefetch, None)
elif ARCH_UTILS.is_cond_jump(inst):
if self.arch == CS_ARCH_MIPS:
prefetch = self.__prefetch_inst(inst)
gph.cond_jumps_set.add(ad)
op = inst.operands[-1]
if op.type == CS_OP_IMM:
if self.arch == CS_ARCH_MIPS:
direct_nxt = prefetch.address + prefetch.size
else:
direct_nxt = inst.address + inst.size
nxt_jmp = op.value.imm
stack.append(direct_nxt)
stack.append(nxt_jmp)
gph.new_node(inst, prefetch, [direct_nxt, nxt_jmp])
else:
# Can't interpret jmp ADDR|reg
gph.new_node(inst, prefetch, None)
else:
nxt = inst.address + inst.size
stack.append(nxt)
gph.new_node(inst, None, [nxt])
if len(gph.nodes) == 0:
return None, 0
if self.binary.type == T_BIN_PE:
nb_new_syms = self.binary.pe_reverse_stripped_symbols(self)
else:
nb_new_syms = 0
elapsed = time()
elapsed = elapsed - start
debug__("Graph built in %fs (%d instructions)" %
(elapsed, len(gph.nodes)))
return gph, nb_new_syms
You should have received a copy of the GNU General Public License
along with RIAAPath. If not, see <http://www.gnu.org/licenses/>.
"""
import json
import sys
import os
from lib.mbz import MusicBrainz
from lib.graph import Graph
if __name__ == "__main__":
mbz = MusicBrainz()
labels = mbz.get_labels()
relations = mbz.get_relations()
mbz.disconnect()
graph = Graph()
graph.add_labels(labels)
graph.add_relations(relations)
tree = graph.generate_riaa_tree()
print(tree)
if not os.path.isdir("dist"):
os.mkdir("dist")
with open("dist/riaalabels.js", "w") as output:
output.write(json.dumps(tree))
class TestGraph(unittest.TestCase):
def setUp(self):
# A brand new graph.
self.new = Graph()
# A disconnected graph
self.disconnected = Graph()
self.disconnected.add_edge(1, 2)
self.disconnected.add_edge(3, 4)
# A complete graph
self.complete = Graph()
self.complete.add_edge(1, 2, 3)
self.complete.add_edge(2, 3, 5)
self.complete.add_edge(3, 4, 7)
self.complete.add_edge(4, 1, 5)
self.complete.add_edge(1, 3, 4)
self.complete.add_edge(2, 4, 6)
def test_has_edge(self):
self.assertFalse(self.new.has_edge(1, 2))
self.assertFalse(self.disconnected.has_edge(2, 3))
self.assertFalse(self.disconnected.has_edge(1, 1))
self.assertFalse(self.disconnected.has_edge(5, 1))
self.assertTrue(self.disconnected.has_edge(2, 1))
def test_unweighted_edges(self):
self.assertEqual(self.new.unweighted_edges(), set())
self.assertEqual(len(self.disconnected.unweighted_edges()), 2)
self.assertEqual(len(self.complete.unweighted_edges()), 6)
for graph in self.disconnected, self.complete:
edges = graph.unweighted_edges()
for (source, target) in edges:
self.assertNotIn((target, source), edges)
def test_weighted_edges(self):
self.assertEqual(self.new.weighted_edges(), set())
self.assertEqual(len(self.disconnected.weighted_edges()), 2)
self.assertEqual(len(self.complete.weighted_edges()), 6)
edges = self.disconnected.weighted_edges()
for (source, target, weight) in edges:
self.assertEqual(weight, 1)
self.assertNotIn((target, source, weight), edges)
edges = self.complete.weighted_edges()
for (source, target, weight) in edges:
self.assertEqual(weight, source + target)
self.assertNotIn((target, source, weight), edges)
def test_topological_sort(self):
for graph in self.new, self.disconnected, self.complete:
self.assertEqual(graph.topological_sort(), [])
def test_best_tour(self):
self.assertIn(self.complete.best_tour(),
[[1, 2, 3, 4, 1], [2, 3, 4, 1, 2], [3, 4, 1, 2, 3],
[4, 1, 2, 3, 4]])
def test_minimum_spanning_tree(self):
mst = self.complete.minimum_spanning_tree(4)
self.assertEqual(mst.nodes(), self.complete.nodes())
self.assertEqual(mst.unweighted_edges(), {(4, 1), (1, 2), (1, 3)})
import socket
from lib.graph import Graph, GraphEncoder, GraphDecoder
from json import loads, dumps
from bsonrpc import JSONRpc
from bsonrpc.exceptions import FramingError
from bsonrpc.framing import (JSONFramingNetstring, JSONFramingNone,
JSONFramingRFC7464)
# Cut-the-corners TCP Client:
s = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
s.connect(('localhost', 50001))
rpc = JSONRpc(s, framing_cls=JSONFramingNone)
server = rpc.get_peer_proxy()
graph = Graph()
graph.add_node("leaf1")
graph.add_node("leaf2")
graph.add_node(
"root", [graph.nodes["leaf1"], graph.nodes["leaf2"], graph.nodes["leaf1"]])
encoder = GraphEncoder()
# Execute in server:
result = loads(server.increment(encoder.default(graph)), cls=GraphDecoder)
result.nodes["root"].show()
result = loads(server.increment(encoder.default(result)), cls=GraphDecoder)
result.nodes["root"].show()
rpc.close() # Closes the socket 's' also
def main():
random.seed(params.seed)
np.random.seed(params.seed)
tic = time.time()
logger = init_logger('_log/log_b{:d}_l{:d}_nd{:d}_seed{:d}'.format(
params.batch_size, params.num_layer, params.node_dim, params.seed))
logger.info('parameters')
logger.info(vars(params))
train, valid, test, train_moles, valid_moles = load_dataset(params.seed)
train_moles = sorted(train_moles)
valid_moles = sorted(valid_moles)
valid.sort_values('molecule_name', inplace=True)
logger.info('train moles: {} ...'.format(train_moles[:5]))
logger.info('valid moles: {} ...'.format(valid_moles[:5]))
test_moles = sorted(list(set(test['molecule_name'])))
test.sort_values('molecule_name', inplace=True)
logger.info('train data: {}'.format(train.shape))
logger.info('valid data: {}'.format(valid.shape))
logger.info('test data: {}'.format(test.shape))
structures = pd.read_csv('../../input/structures.csv')
structures_groups = structures.groupby('molecule_name')
bonds = pd.read_csv('../../input/bonds.csv')
bonds_gp = bonds.groupby('molecule_name')
train_charges = pd.read_csv('../../input/train_ob_charges.csv')
train_charges_gp = train_charges.groupby('molecule_name')
test_charges = pd.read_csv('../../input/test_ob_charges.csv')
test_charges_gp = test_charges.groupby('molecule_name')
train_targets = train.groupby('molecule_name')
valid_targets = valid.groupby('molecule_name')
test_targets = test.groupby('molecule_name')
if params.debug:
random.shuffle(train_moles)
train_moles = train_moles[:5000]
test_moles = test_moles[:1000]
valid.sort_values('id', inplace=True)
test.sort_values('id', inplace=True)
list_atoms = list(set(structures['atom']))
train_graphs = dict()
for mole in tqdm(train_moles):
train_graphs[mole] = Graph(structures_groups.get_group(mole),
bonds_gp.get_group(mole), list_atoms,
train_charges_gp.get_group(mole))
valid_graphs = dict()
for mole in tqdm(valid_moles):
valid_graphs[mole] = Graph(structures_groups.get_group(mole),
bonds_gp.get_group(mole), list_atoms,
train_charges_gp.get_group(mole))
test_graphs = dict()
for mole in tqdm(test_moles):
test_graphs[mole] = Graph(structures_groups.get_group(mole),
bonds_gp.get_group(mole), list_atoms,
test_charges_gp.get_group(mole))
model = EdgeUpdateNet(num_layer=params.num_layer,
node_dim=params.node_dim,
edge_dim=params.edge_dim,
gpu=params.gpu)
if params.gpu >= 0:
logger.info('transfer model to GPU {}'.format(params.gpu))
model.to_gpu(params.gpu)
optimizer = optimizers.Adam(alpha=5e-4)
optimizer.setup(model)
model.cleargrads()
epoch = 2 if params.debug else params.epoch
for ep in range(epoch):
logger.info('')
logger.info('')
logger.info('start epoch {}'.format(ep))
logger.info('')
# -------------------------
logger.info('')
logger.info('training')
loss_value = 0
random.shuffle(train_moles)
train_batches_moles = generate_batches(structures_groups, train_moles,
params.batch_size)
random.shuffle(train_batches_moles)
for batch_moles in tqdm(train_batches_moles):
list_train_X = list()
list_train_y = list()
for target_mol in batch_moles:
list_train_X.append(train_graphs[target_mol])
list_train_y.append(train_targets.get_group(target_mol))
with chainer.using_config('train', ep == 0):
loss = model(list_train_X, list_train_y)
model.cleargrads()
loss.backward()
optimizer.update()
loss_value += cuda.to_cpu(loss.data)
logger.info('train loss: {:.3f}'.format(
float(loss_value) / len(train_moles)))
# -------------------------
logger.info('')
logger.info('validation')
valid_df = predicts(structures_groups, valid_moles, valid_graphs,
valid_targets, model, params.batch_size)
valid_pred = valid_df[['fc', 'sd', 'pso', 'dso']]
valid_score = calc_score(valid, valid_pred.values)
logger.info('valid score: {:.3f}'.format(valid_score))
# -------------------------
optimizer.alpha = optimizer.alpha * 0.95
logger.info('change learning rate: {:.6f}'.format(optimizer.alpha))
if (ep + 1) % 20 == 0:
# -------------------------
# save model
dir_model = Path('_model')
logger.info('save model')
dir_model.mkdir(exist_ok=True)
serializers.save_npz(
dir_model / 'model_ep{}_seed{}.npz'.format(ep, params.seed),
model)
# -------------------------
# make submission
logger.info('')
logger.info('test')
test_df = predicts(structures_groups, test_moles, test_graphs,
test_targets, model, params.batch_size)
make_submission(test_df,
ep,
valid_score,
params.seed,
dir_sub=Path('_submission'))
make_submission(valid_df,
ep,
valid_score,
params.seed,
dir_sub=Path('_valid'))
toc = time.time() - tic
logger.info('Elapsed time {:.1f} [min]'.format(toc / 60))
def testTarjansSCC(self):
expected = [('G',), ('B',), ('E', 'F', 'D'), ('C',), ('A',)]
g = Graph()
g.addVertex('A')
g.addVertex('B')
g.addVertex('C')
g.addVertex('D')
g.addVertex('E')
g.addVertex('F')
g.addVertex('G')
g.addEdge('A', 'C', 1)
g.addEdge('A', 'E', 1)
g.addEdge('A', 'F', 1)
g.addEdge('B', 'G', 1)
g.addEdge('C', 'B', 1)
g.addEdge('C', 'D', 1)
g.addEdge('F', 'E', 1)
g.addEdge('D', 'F', 1)
g.addEdge('E', 'D', 1)
g.addEdge('E', 'G', 1)
self.assertEqual(expected, g.strongly_connected_components())
#case -2
expected = [(12, 11, 9, 10, 7, 8), (6, 3), (5, 4, 2), (1,)]
g2 = Graph()
for v in range(1, 13):
g2.addVertex(v)
g2.addEdge(1, 2, 1)
g2.addEdge(2, 3, 1)
g2.addEdge(2, 4, 1)
g2.addEdge(2, 5, 1)
g2.addEdge(3, 6, 1)
g2.addEdge(4, 5, 1)
g2.addEdge(4, 7, 1)
g2.addEdge(5, 2, 1)
g2.addEdge(5, 6, 1)
g2.addEdge(5, 7, 1)
g2.addEdge(6, 3, 1)
g2.addEdge(6, 8, 1)
g2.addEdge(7, 8, 1)
g2.addEdge(7, 10, 1)
g2.addEdge(8, 7, 1)
g2.addEdge(9, 7, 1)
g2.addEdge(10, 9, 1)
g2.addEdge(10, 11, 1)
g2.addEdge(11, 12, 1)
g2.addEdge(12, 10, 1)
self.assertEqual(expected, g2.strongly_connected_components())
return None
def infer(self, params):
self.calc_dominance_distributions('in', params)
self.calc_dominance_distributions('out', params)
for user in self.users.iter():
if user['location_point'] == None:
user['location_point'] = self.infer_one(user['id'], params)
def get_users(self):
return self.users
if __name__ == '__main__':
import sys
from lib.users import Users
from lib.graph import Graph
if len(sys.argv) < 3:
print '[usage]: python %s [users file path] [graph file path]' % sys.argv[0]
exit()
users = Users()
users.load_file(sys.argv[1])
graph = Graph()
graph.load_file(sys.argv[2])
lmm = LMM(users, graph)
lmm.infer()
print lmm.get_users()
def get_graph(self, addr):
from capstone import CS_OP_IMM
ARCH_UTILS = self.load_arch_module().utils
curr = self.lazy_disasm(addr)
gph = Graph(self, addr)
rest = []
start = time.clock()
while 1:
if not gph.exists(curr):
if ARCH_UTILS.is_uncond_jump(curr) and len(curr.operands) > 0:
if curr.operands[0].type == CS_OP_IMM:
addr = curr.operands[0].value.imm
nxt = self.lazy_disasm(addr)
gph.set_next(curr, nxt)
rest.append(nxt.address)
else:
# Can't interpret jmp ADDR|reg
gph.add_node(curr)
gph.uncond_jumps_set.add(curr.address)
elif ARCH_UTILS.is_cond_jump(curr) and len(curr.operands) > 0:
if curr.operands[0].type == CS_OP_IMM:
nxt_jump = self.lazy_disasm(curr.operands[0].value.imm)
direct_nxt = self.lazy_disasm(curr.address + curr.size)
gph.set_cond_next(curr, nxt_jump, direct_nxt)
rest.append(nxt_jump.address)
rest.append(direct_nxt.address)
else:
# Can't interpret jmp ADDR|reg
gph.add_node(curr)
gph.cond_jumps_set.add(curr.address)
elif ARCH_UTILS.is_ret(curr):
gph.add_node(curr)
else:
try:
nxt = self.lazy_disasm(curr.address + curr.size)
gph.set_next(curr, nxt)
rest.append(nxt.address)
except:
gph.add_node(curr)
pass
try:
curr = self.lazy_disasm(rest.pop())
except IndexError:
break
if self.binary.type == T_BIN_PE:
self.binary.pe_reverse_stripped_symbols(self)
elapsed = time.clock()
elapsed = elapsed - start
debug__("Graph built in %fs" % elapsed)
return gph
server = cfg.get("zabbix_server")
username = cfg.get("zabbix_user")
password = cfg.get("zabbix_pw")
graph_path = cfg.get("graph_dir")
period = cfg.get('period')
stime = cfg.get('start_time')
template_name = cfg.get('template_name')
client_name = template_name.split('.')[0]
template = cfg.get('template_dir') + template_name
output_path = cfg.get('output_dir')
output_name = client_name + '_' + now + '.docx'
zp = ZAPI(server, username, password)
gph = Graph(server, username, password)
# doc = Document(unicode(template))
doc = Document(template)
# pdb.set_trace()
for p in doc.paragraphs:
print(p.text)
if p.text.strip().startswith('zabbix_graph'):
m=re.match('^zabbix_graph\|([^|]*)\|([^|]*)$', p.text.strip())
val1, val2 = m.groups()
hostname = val1.strip()
graph = val2.strip()
host_id = zp.get_host_id_by_name(hostname)
graph_id = zp.get_graph_id(host_id, graph)
graph_name = graph_path + '_'.join([hostname, graph_id, now, '.png'])
gph.get_graph(graph_id,period, stime, graph_name)
print '\tkinsella'
exit()
args = {}
for i in range(1, len(sys.argv)):
key, value = sys.argv[i].split(':')
args[key] = value
test_users = Users()
test_users.load_file(args['test'])
training_users = Users()
training_users.load_file(args['training'])
ev = Evaluation(test_users)
if args['method'] == 'naiveg':
graph = Graph()
graph.load_file(args['graph'])
method = NaiveG(training_users, graph)
elif args['method'] == 'naivec':
db = DB(args['dbuser'], args['dbpass'], args['dbname'])
tweets = Tweets(db)
venues = Venues(db)
method = NaiveC(training_users, tweets, venues)
elif args['method'] == 'li':
db = DB(args['dbuser'], args['dbpass'], args['dbname'])
tweets = Tweets(db)
venues = Venues(db)
graph = Graph()
graph.load_file(args['graph'])
method = UDI(training_users, tweets, venues, graph)
elif args['method'] == 'jurgens':
def graph():
return Graph()
import numpy as np
import tensorflow as tf
from tensorflow.keras.layers import Input
from lib.gcn import GraphConv, TemporalConv
from lib.graph import Graph
skeleton = Graph("sbu", "spatial")
input_features = Input([30, skeleton.num_node, 3], dtype="float32")
x = tf.keras.layers.Conv2D(64 * 3, (3, 1), padding="same")(input_features)
input_A = Input(tensor=tf.keras.backend.constant(skeleton.A))
x, A = GraphConv(64, t_kernels=3)([input_features, input_A])
x = TemporalConv(64, dropout=0.5)(x)
x, A = GraphConv(128, t_kernels=3)([x, A])
x = TemporalConv(128, dropout=0.5)(x)
print(x.shape)
def test_edge_weight(self):
g = Graph()
g.add_edge(0, 1, 5)
self.assertTrue(g.get_edge_weight(0, 1) == 5)
g.increase_edge_weight(0, 1, 1)
self.assertTrue(g.get_edge_weight(0, 1) == 6)
g.increase_edge_weight(0, 2, 3)
self.assertTrue(g.get_edge_weight(0, 2) == 3)
def main():
parser = argparse.ArgumentParser()
subparsers = parser.add_subparsers()
log_parsers = get_log_parsers()
parse_cmd_parser = subparsers.add_parser("parse")
parse_cmd_parser.add_argument(
"--parser",
help=(
"The parser used to extract time information from a log. Valid "
"options: {0}".format(", ".join(log_parsers.keys()))
)
)
parse_cmd_parser.add_argument(
"--min-duration",
default="00:00:10.000",
help="The minimum duration of a valid task"
)
parse_cmd_parser.add_argument(
"logfile",
help=(
"Log file containing necessary timing information. See README.md "
"for more information"
)
)
parse_cmd_parser.set_defaults(which="parse")
graph_cmd_parser = subparsers.add_parser("graph")
graph_cmd_parser.add_argument(
"--imagefile",
default="graph.png",
help="File location to write image to"
)
graph_cmd_parser.add_argument(
"--title",
default="Performance Profile",
help="Title to appear on graph"
)
graph_cmd_parser.add_argument(
"--subtitle",
default="",
help="Subtitle to appear on graph"
)
graph_cmd_parser.add_argument(
"dsvfile",
help=(
"File containing semicolon-delimited values. See README.md "
"for more information"
)
)
graph_cmd_parser.set_defaults(which="graph")
args = parser.parse_args()
if args.which == "parse":
if args.parser in log_parsers:
log_parsers[args.parser].parse(args.logfile, args.min_duration)
else:
sys.exit("Please specify a valid parser")
elif args.which == "graph":
print "Wrote: " + Graph.render(
args.dsvfile, args.imagefile, args.title, args.subtitle),
print
def test_add_edge(self):
g = Graph()
g.add_edge(0, 1)
self.assertTrue((0, 1) in g)
self.assertTrue((1, 0) not in g)
>>> end = "Penzance"
>>> cities.weight(cities.shortest_path(start, end))
284
>>> cities.weighted_distance(start, end)
284
Although all cities are directly connected to each other,
the shortest path is not necessarily the direct path.
>>> cities.shortest_path(start, end)
['Luton', 'Nuneaton', 'Penzance']
"""
from lib.graph import Graph
cities = Graph()
cities.add_edge("Scunthorpe", "Bridlington", 31)
cities.add_edge("Scunthorpe", "Wick", 514)
cities.add_edge("Scunthorpe", "Bognor", 252)
cities.add_edge("Scunthorpe", "Nuneaton", 111)
cities.add_edge("Scunthorpe", "Luton", 117)
cities.add_edge("Scunthorpe", "Wrexham", 142)
cities.add_edge("Scunthorpe", "Penzance", 318)
cities.add_edge("Bridlington", "Luton", 142)
cities.add_edge("Bridlington", "Nuneaton", 115)
cities.add_edge("Bridlington", "Bognor", 209)
cities.add_edge("Bridlington", "Penzance", 426)
cities.add_edge("Bridlington", "Wrexham", 162)
cities.add_edge("Bridlington", "Wick", 512)
cities.add_edge("Luton", "Wick", 627)
cities.add_edge("Luton", "Bognor", 112)
]
bands = [
Band(id=1,
cost=1,
frequency_range_from=1,
frequency_range_to=384,
loss_per_km=0.046),
Band(id=2,
cost=2,
frequency_range_from=385,
frequency_range_to=768,
loss_per_km=0.055),
]
graph = Graph(Graphical(data_xml_root))
demands = read_demands(data_xml_root, graph)
problem = Problem(graph, demands, transponders, bands)
gen_alg = GeneticAlgorithm(problem, 2000, 5000, 0.01)
gen_alg.init_population()
period_of_save_result = 10
i = 1
while True:
gen_alg.generate_new_population()
print("Epoch nr", i)
print("Best result:")
print(" Cost = ", gen_alg.P[0].get_cost())
def run():
if interactive: print '''Beaver %s''' % __version__
graph = Graph(verbose=args.verbose)
for input_file in args.file:
try:
graph.parse(filename=input_file)
except KeyboardInterrupt:
print "KeyboardInterrupt"
sys.exit()
except Exception as e:
print e
sys.exit()
if args.eval:
try:
graph.parse(text=args.eval)
except KeyboardInterrupt:
print "KeyboardInterrupt"
sys.exit()
except Exception as e:
print e
sys.exit()
if interactive:
import readline
exit = False
while not exit:
graph.verbose = args.verbose
try:
next_line = raw_input('>> ').strip()
if not next_line: continue
if next_line[0] == '-' and next_line.split(' ')[0] in arg_parser._option_string_actions:
command = next_line.split(' ')[0]
action = arg_parser._option_string_actions[command].dest
if len(next_line.split(' ')) > 1:
arg = ' '.join(next_line.split(' ')[1:])
try: arg = eval(arg)
except: pass
else:
arg = not getattr(args, action)
try:
setattr(args, action, arg)
except:
print 'Illegal argument: %s %s' % (command, arg)
elif next_line in ('exit', 'quit'):
exit = True
else:
stmts = graph.parse(text=next_line)
if stmts == 0:
raise BeaverException('Failed to parse line: %s' % next_line)
except EOFError:
print
exit = True
except KeyboardInterrupt:
print
continue
except Exception as e:
print e
continue
if args.out:
if args.out is True:
filename = None
else:
filename = args.out
if not filename.startswith('<') and filename.endswith('>'):
filename = '<%s>' % os.path.abspath(filename)
filename = Uri(filename)
graph.execute(OutCommand(filename))
if args.draw:
graph.draw(args.draw)
def get_graph(self, entry_addr):
from capstone import CS_OP_IMM, CS_ARCH_MIPS
ARCH_UTILS = self.load_arch_module().utils
gph = Graph(self, entry_addr)
stack = [entry_addr]
start = time()
prefetch = None
addresses = set()
# WARNING: this assume that on every architectures the jump
# address is the last operand (operands[-1])
# Here each instruction is a node. Blocks will be created in the
# function __simplify.
while stack:
ad = stack.pop()
inst = self.lazy_disasm(ad)
if inst is None:
# Remove all previous instructions which have a link
# to this instruction.
if ad in gph.link_in:
for i in gph.link_in[ad]:
gph.link_out[i].remove(ad)
for i in gph.link_in[ad]:
if not gph.link_out[i]:
del gph.link_out[i]
del gph.link_in[ad]
continue
if gph.exists(inst):
continue
addresses.add(ad)
if ARCH_UTILS.is_ret(inst):
if self.arch == CS_ARCH_MIPS:
prefetch = self.__prefetch_inst(inst)
addresses.add(prefetch.address)
gph.new_node(inst, prefetch, None)
elif ARCH_UTILS.is_uncond_jump(inst):
if self.arch == CS_ARCH_MIPS:
prefetch = self.__prefetch_inst(inst)
addresses.add(prefetch.address)
gph.uncond_jumps_set.add(ad)
op = inst.operands[-1]
if op.type == CS_OP_IMM:
nxt = op.value.imm
stack.append(nxt)
gph.new_node(inst, prefetch, [nxt])
else:
if inst.address in self.jmptables:
table = self.jmptables[inst.address].table
stack += table
gph.new_node(inst, prefetch, table)
else:
# Can't interpret jmp ADDR|reg
gph.new_node(inst, prefetch, None)
elif ARCH_UTILS.is_cond_jump(inst):
if self.arch == CS_ARCH_MIPS:
prefetch = self.__prefetch_inst(inst)
addresses.add(prefetch.address)
gph.cond_jumps_set.add(ad)
op = inst.operands[-1]
if op.type == CS_OP_IMM:
if self.arch == CS_ARCH_MIPS:
direct_nxt = prefetch.address + prefetch.size
else:
direct_nxt = inst.address + inst.size
nxt_jmp = op.value.imm
stack.append(direct_nxt)
stack.append(nxt_jmp)
gph.new_node(inst, prefetch, [direct_nxt, nxt_jmp])
else:
# Can't interpret jmp ADDR|reg
gph.new_node(inst, prefetch, None)
else:
nxt = inst.address + inst.size
stack.append(nxt)
gph.new_node(inst, None, [nxt])
if len(gph.nodes) == 0:
return None, 0
if self.binary.type == T_BIN_PE:
nb_new_syms = self.binary.pe_reverse_stripped_symbols(self, addresses)
else:
nb_new_syms = 0
elapsed = time()
elapsed = elapsed - start
debug__("Graph built in %fs (%d instructions)" % (elapsed, len(gph.nodes)))
return gph, nb_new_syms
def testDijkstra(self):
g = Graph()
g.addVertex('s')
g.addVertex('u')
g.addVertex('v')
g.addVertex('x')
g.addVertex('y')
g.addEdge('s', 'u', 10)
g.addEdge('s', 'x', 5)
g.addEdge('u', 'v', 1)
g.addEdge('u', 'x', 2)
g.addEdge('v', 'y', 4)
g.addEdge('x', 'u', 3)
g.addEdge('x', 'v', 9)
g.addEdge('x', 'y', 2)
g.addEdge('y', 's', 7)
g.addEdge('y', 'v', 6)
expected = ['y', 's']
actual = g.shortestPathDijkstra('y', 's')
self.assertEqual(expected, actual)
expected = ['s', 'x', 'u', 'v']
actual = g.shortestPathDijkstra('s', 'v')
self.assertEqual(expected, actual)
g.updateEdge('s', 'u', 1)
expected = ['s', 'u', 'v']
actual = g.shortestPathDijkstra('s', 'v')
self.assertEqual(expected, actual)
