def get(self):
solr_args = dict(request.args)
if 'max_groups' in solr_args:
del solr_args['max_groups']
solr_args["rows"] = min(int(solr_args.get("rows", [current_app.config.get("VIS_SERVICE_PN_MAX_RECORDS")])[0]), current_app.config.get("VIS_SERVICE_PN_MAX_RECORDS"))
solr_args['fl'] = ['bibcode,title,first_author,year,citation_count,read_count,reference']
solr_args['wt'] ='json'
headers = {'X-Forwarded-Authorization' : request.headers.get('Authorization')}
response = client().get(current_app.config.get("VIS_SERVICE_SOLR_PATH") , params = solr_args, headers=headers)
if response.status_code == 200:
full_response = response.json()
else:
return {"Error": "There was a connection error. Please try again later", "Error Info": response.text}, response.status_code
#get_network_with_groups expects a list of normalized authors
data = full_response["response"]["docs"]
paper_network_json = paper_network.get_papernetwork(data, request.args.get("max_groups", current_app.config.get("VIS_SERVICE_PN_MAX_GROUPS")))
if paper_network_json:
return {"msg" : {"numFound" : full_response["response"]["numFound"],
"start": full_response["response"].get("start", 0),
"rows": int(full_response["responseHeader"]["params"]["rows"])
}, "data" : paper_network_json}, 200
else:
return {"Error": "Empty network."}, 200
def test_paper_network_resource(self):
#first, test the tf-idf library
self.maxDiff = None
input_js_tf_idf = json.load(open(PROJECT_HOME + "/tests/test_input/tf_idf_input.json"))
test_js_tf_idf = json.load(open(PROJECT_HOME + "/tests/test_output/tf_idf_output.json"))
processed_data = json.loads(json.dumps(tf_idf.get_tf_idf_vals(input_js_tf_idf), sort_keys=True))
self.assertEqual(processed_data, test_js_tf_idf)
#now test reference counting function
processed_data = json.loads(json.dumps(paper_network.get_papernetwork(input_js_paper_network["response"]["docs"], 10), sort_keys=True))
topCommonReferences = processed_data["summaryGraph"]["nodes"][0]["top_common_references"].items().sort()
def get_group_references(group):
indexes =[i for i,n in enumerate(processed_data["fullGraph"]["nodes"]) if n["group"] == group]
links =[l for l in processed_data["fullGraph"]["links"] if l["source"] in indexes and l["target"] in indexes]
freq_dict = defaultdict(list)
for l in links:
for o in l["overlap"]:
freq_dict[o].extend([l["source"], l["target"]])
for f in freq_dict:
freq_dict[f] = len(list(set(freq_dict[f])))
final = sorted(freq_dict.items(), key=lambda x:x[1], reverse=True)[:5]
num_papers = processed_data["summaryGraph"]["nodes"][0]["paper_count"]
final = [(f[0], f[1]/float(num_papers)) for f in final].sort()
return final
self.assertEqual(topCommonReferences, get_group_references(0))
# now just test input/output
test_js_paper_network = json.load(open(PROJECT_HOME + "/tests/test_output/paper_network_star.json"))
processed_data = json.loads(json.dumps(paper_network.get_papernetwork(input_js_paper_network["response"]["docs"], 10), sort_keys=True))
self.assertEqual(processed_data, test_js_paper_network)
def get(self):
solr_args = dict(request.args)
if 'max_groups' in solr_args:
del solr_args['max_groups']
solr_args["rows"] = min(
int(
solr_args.get(
"rows",
[current_app.config.get("VIS_SERVICE_PN_MAX_RECORDS")
])[0]),
current_app.config.get("VIS_SERVICE_PN_MAX_RECORDS"))
solr_args['fl'] = [
'bibcode,title,first_author,year,citation_count,read_count,reference'
]
solr_args['wt'] = 'json'
headers = {
'X-Forwarded-Authorization': request.headers.get('Authorization')
}
response = client().get(
current_app.config.get("VIS_SERVICE_SOLR_PATH"),
params=solr_args,
headers=headers)
if response.status_code == 200:
full_response = response.json()
else:
return {
"Error":
"There was a connection error. Please try again later",
"Error Info": response.text
}, response.status_code
#get_network_with_groups expects a list of normalized authors
data = full_response["response"]["docs"]
paper_network_json = paper_network.get_papernetwork(
data,
request.args.get(
"max_groups",
current_app.config.get("VIS_SERVICE_PN_MAX_GROUPS")))
if paper_network_json:
return {
"msg": {
"numFound": full_response["response"]["numFound"],
"start": full_response["response"].get("start", 0),
"rows":
int(full_response["responseHeader"]["params"]["rows"])
},
"data": paper_network_json
}, 200
else:
return {"Error": "Empty network."}, 200
class PaperNetwork(Resource):
'''Returns paper network data for a solr query'''
decorators = [advertise('scopes', 'rate_limit')]
scopes = []
rate_limit = [500, 60 * 60 * 24]
def post(self):
try:
required_fields = [
'bibcode,title,first_author,year,citation_count,read_count,reference'
]
response = make_request(request, "PN", required_fields)
except QueryException, error:
return {
'Error': 'there was a problem with your request',
'Error Info': str(error)
}, 403
if response.status_code == 200:
full_response = response.json()
else:
return {
"Error":
"There was a connection error. Please try again later",
"Error Info": response.text
}, response.status_code
#get_network_with_groups expects a list of normalized authors
data = full_response["response"]["docs"]
paper_network_json = paper_network.get_papernetwork(
data,
request.json.get(
"max_groups",
current_app.config.get("VIS_SERVICE_PN_MAX_GROUPS")))
if paper_network_json:
return {
"msg": {
"numFound": full_response["response"]["numFound"],
"start": full_response["response"].get("start", 0),
"rows":
int(full_response["responseHeader"]["params"]["rows"])
},
"data": paper_network_json
}, 200
else:
return {"Error": "Empty network."}, 200
def test_paper_network_resource(self):
#first, test the tf-idf library
self.maxDiff = None
input_js_tf_idf = json.load(
open(PROJECT_HOME + "/tests/test_input/tf_idf_input.json"))
test_js_tf_idf = json.load(
open(PROJECT_HOME + "/tests/test_output/tf_idf_output.json"))
processed_data = json.loads(
json.dumps(tf_idf.get_tf_idf_vals(input_js_tf_idf),
sort_keys=True))
self.assertEqual(processed_data, test_js_tf_idf)
#now test reference counting function
processed_data = json.loads(
json.dumps(paper_network.get_papernetwork(
input_js_paper_network["response"]["docs"], 10),
sort_keys=True))
topCommonReferences = processed_data["summaryGraph"]["nodes"][0][
"top_common_references"].items().sort()
def get_group_references(group):
indexes = [
i for i, n in enumerate(processed_data["fullGraph"]["nodes"])
if n["group"] == group
]
links = [
l for l in processed_data["fullGraph"]["links"]
if l["source"] in indexes and l["target"] in indexes
]
freq_dict = defaultdict(list)
for l in links:
for o in l["overlap"]:
freq_dict[o].extend([l["source"], l["target"]])
for f in freq_dict:
freq_dict[f] = len(list(set(freq_dict[f])))
final = sorted(freq_dict.items(), key=lambda x: x[1],
reverse=True)[:5]
num_papers = processed_data["summaryGraph"]["nodes"][0][
"paper_count"]
final = [(f[0], f[1] / float(num_papers)) for f in final].sort()
return final
self.assertEqual(topCommonReferences, get_group_references(0))
# now just test input/output
test_js_paper_network = json.load(
open(PROJECT_HOME + "/tests/test_output/paper_network_star.json"))
processed_data = json.loads(
json.dumps(paper_network.get_papernetwork(
input_js_paper_network["response"]["docs"], 10),
sort_keys=True))
self.assertEqual(processed_data, test_js_paper_network)
