def __init__(self,
args,
model,
criterion,
optimizer,
train_data_loader,
valid_data_loader=None,
lr_scheduler=None):
self.args = args
self.model = model
self.optimizer = optimizer
self.criterion = criterion
self.train_data_loader = train_data_loader
# epoch-based training
self.len_epoch = len(self.train_data_loader)
self.valid_data_loader = valid_data_loader
self.do_validation = self.valid_data_loader is not None
self.lr_scheduler = lr_scheduler
self.log_step = int(np.sqrt(train_data_loader.batch_size))
self.writer = TensorboardWriter(args)
self.save_frequency = 10
self.terminal_show_freq = self.args.terminal_show_freq
self.start_epoch = 1
class Trainer:
"""
Trainer class
"""
def __init__(self,
args,
model,
criterion,
optimizer,
train_data_loader,
valid_data_loader=None,
lr_scheduler=None):
self.args = args
self.model = model
self.optimizer = optimizer
self.criterion = criterion
self.train_data_loader = train_data_loader
# epoch-based training
self.len_epoch = len(self.train_data_loader)
self.valid_data_loader = valid_data_loader
self.do_validation = self.valid_data_loader is not None
self.lr_scheduler = lr_scheduler
self.log_step = int(np.sqrt(train_data_loader.batch_size))
self.writer = TensorboardWriter(args)
self.save_frequency = 10
self.terminal_show_freq = self.args.terminal_show_freq
self.start_epoch = 1
def training(self):
for epoch in range(self.start_epoch, self.args.nEpochs):
self.train_epoch(epoch)
# if self.do_validation:
# self.validate_epoch(epoch)
val_loss = self.writer.data['val']['loss'] / self.writer.data[
'val']['count']
# print("epoch ", epoch, ":")
# print("val_loss:", val_loss)
if self.args.save is not None and ((epoch + 1) %
self.save_frequency):
self.model.save_checkpoint(self.args.save,
epoch,
val_loss,
optimizer=self.optimizer)
self.writer.write_end_of_epoch(epoch)
self.writer.reset('train')
self.writer.reset('val')
def train_epoch(self, epoch):
self.model.train()
for batch_idx, input_tuple in enumerate(self.train_data_loader):
# print("batch_idx:",batch_idx)
# print("input_tuple shape:", input_tuple[0].size())
self.optimizer.zero_grad()
input_tensor, target = prepare_input(input_tuple=input_tuple,
args=self.args)
input_tensor.requires_grad = True
output = self.model(input_tensor)
# print("model output shape:", output.size())
loss_dice, per_ch_score = self.criterion(output, target)
loss_dice.backward()
self.optimizer.step()
self.writer.update_scores(batch_idx, loss_dice.item(),
per_ch_score, 'train',
epoch * self.len_epoch + batch_idx)
if (batch_idx + 1) % self.terminal_show_freq == 0:
partial_epoch = epoch + batch_idx / self.len_epoch - 1
self.writer.display_terminal(partial_epoch, epoch, 'train')
self.writer.display_terminal(self.len_epoch,
epoch,
mode='train',
summary=True)
def validate_epoch(self, epoch):
self.model.eval()
for batch_idx, input_tuple in enumerate(self.valid_data_loader):
# print("batch_idx:",batch_idx)
# print("input_tuple shape:", input_tuple[0].size())
with torch.no_grad():
input_tensor, target = prepare_input(input_tuple=input_tuple,
args=self.args)
input_tensor.requires_grad = False
output = self.model(input_tensor)
loss, per_ch_score = self.criterion(output, target)
self.writer.update_scores(batch_idx, loss.item(), per_ch_score,
'val',
epoch * self.len_epoch + batch_idx)
self.writer.display_terminal(len(self.valid_data_loader),
epoch,
mode='val',
summary=True)
class Trainer:
"""
Trainer class
"""
def __init__(self, args, model, criterion, optimizer, train_data_loader,
# valid_data_loader=None, lr_scheduler=None):
valid_data_loader=None, lr_scheduler=None,dataset=None, train_data_loader_aug=None ):
self.dataset = dataset
self.args = args
self.model = model
self.optimizer = optimizer
self.criterion = criterion
self.train_data_loader = train_data_loader
self.train_data_loader_aug = train_data_loader_aug
# epoch-based training
self.len_epoch = len(self.train_data_loader)
self.valid_data_loader = valid_data_loader
self.do_validation = self.valid_data_loader is not None
self.lr_scheduler = lr_scheduler
self.log_step = int(np.sqrt(train_data_loader.batch_size))
self.writer = TensorboardWriter(args)
self.save_frequency = 10
self.terminal_show_freq = self.args.terminal_show_freq
self.start_epoch = 1
def adjust_learning_rate(self, optimizer, gamma, step):
lr = self.args.lr * (gamma ** (step))
for param_group in optimizer.param_groups:
param_group['lr'] = lr
def training(self):
step_index = 0
best_loss = 1000000
for epoch in range(self.start_epoch, self.args.nEpochs):
# import ipdb;ipdb.set_trace()
if epoch in self.args.lrstep:
step_index += 1
self.adjust_learning_rate(self.optimizer, 0.1, step_index)
if self.train_data_loader_aug is None:
self.train_epoch(epoch)
else:
self.train_epoch_aug(epoch)
if self.do_validation:
self.validate_epoch(epoch)
val_loss = self.writer.data['val']['loss'] / self.writer.data['val']['count']
if self.args.save is not None and ((epoch + 1) % self.save_frequency):
# if self.args.local_rank == 0:
# self.model.save_checkpoint(self.args.save,
# epoch, val_loss,
# optimizer=self.optimizer)
is_best = best_loss > val_loss
best_prec1 = min(best_loss, val_loss)
if self.args.local_rank == 0:
print('Save model to disk')
save_checkpoint({
'epoch': epoch + 1,
'state_dict': self.model.state_dict(),
'optimizer' : self.optimizer.state_dict(),
}, is_best, filename='{}.pth'.format(self.args.save))
if self.args.local_rank == 0:
self.writer.write_end_of_epoch(epoch)
self.writer.reset('train')
self.writer.reset('val')
def train_epoch_aug(self, epoch):
self.model.train()
# args = get_arguments()
# train_dataset = MICCAI2020_RIBFRAC(args, 'train', dataset_path='../datasets', classes=args.classes, dim=args.dim,
# split_id=0, samples=args.samples_train, load=args.loadData)
# patch_size = (128, 128, 48)
# batch_size = 2
# num_threads_for_brats_example = 2
# dataloader_train = MICCAI2020_RIBFRAC_DataLoader3D(self.dataset, batch_size, patch_size, num_threads_for_brats_example)
# tr_transforms = get_train_transform(patch_size)
# tr_gen = SingleThreadedAugmenter(dataloader_train, tr_transforms,) #num_processes=num_threads_for_brats_example,
# num_cached_per_queue=3,
# seeds=None,
# pin_memory=False)
# tr_gen.restart()
# _ = next(tr_gen)
# import ipdb;ipdb.set_trace()
# for batch_idx, input_tuple in enumerate(self.train_data_loader):
for batch_idx, data_seg_dict in enumerate(self.train_data_loader_aug):
# for batch_idx, data_seg_dict in enumerate(tr_gen):
if batch_idx / self.len_epoch == 1:
break
input_tuple = [torch.from_numpy(data_seg_dict['data']),torch.from_numpy(data_seg_dict['seg'])]
# input_tuple = [data_seg_dict['data'],data_seg_dict['seg']]
self.optimizer.zero_grad()
# import ipdb;ipdb.set_trace()
input_tensor, target = prepare_input(input_tuple=input_tuple, args=self.args)
input_tensor.requires_grad = True
output = self.model(input_tensor)
# import ipdb;ipdb.set_trace()
# loss_dice, per_ch_score = self.criterion(output[0], target)
loss_dice, per_ch_score = self.criterion(output, target)
# loss_dice = self.criterion(output, target)
# print('epoch ',epoch, 'loss: ',loss_dice.item())
loss_dice.backward()
self.optimizer.step()
# import ipdb;ipdb.set_trace()
if self.args.local_rank == 0:
self.writer.update_scores(batch_idx, loss_dice.item(), per_ch_score, 'train',
epoch * self.len_epoch + batch_idx)
if (batch_idx + 1) % self.terminal_show_freq == 0:
partial_epoch = epoch + batch_idx / self.len_epoch - 1
if self.args.local_rank == 0:
self.writer.display_terminal(partial_epoch, epoch, 'train')
if self.args.local_rank == 0:
self.writer.display_terminal(self.len_epoch, epoch, mode='train', summary=True)
def train_epoch(self, epoch):
self.model.train()
for batch_idx, input_tuple in enumerate(self.train_data_loader):
self.optimizer.zero_grad()
# import ipdb;ipdb.set_trace()
input_tensor, target = prepare_input(input_tuple=input_tuple, args=self.args)
input_tensor.requires_grad = True
output = self.model(input_tensor)
# import ipdb;ipdb.set_trace()
# loss_dice, per_ch_score = self.criterion(output[0], target)
loss_dice, per_ch_score = self.criterion(output, target)
# loss_dice = self.criterion(output, target)
# print('epoch ',epoch, 'loss: ',loss_dice.item())
loss_dice.backward()
self.optimizer.step()
if self.args.local_rank == 0:
self.writer.update_scores(batch_idx, loss_dice.item(), per_ch_score, 'train',
epoch * self.len_epoch + batch_idx)
if (batch_idx + 1) % self.terminal_show_freq == 0:
partial_epoch = epoch + batch_idx / self.len_epoch - 1
if self.args.local_rank == 0:
self.writer.display_terminal(partial_epoch, epoch, 'train')
if self.args.local_rank == 0:
self.writer.display_terminal(self.len_epoch, epoch, mode='train', summary=True)
def validate_epoch(self, epoch):
self.model.eval()
for batch_idx, input_tuple in enumerate(self.valid_data_loader):
with torch.no_grad():
input_tensor, target = prepare_input(input_tuple=input_tuple, args=self.args)
input_tensor.requires_grad = False
output = self.model(input_tensor)
# loss, per_ch_score = self.criterion(output[0], target)
loss, per_ch_score = self.criterion(output, target)
# loss_dice = self.criterion(output, target)
# print('epoch ',epoch , 'loss: ',loss_dice.item())
if self.args.local_rank == 0:
self.writer.update_scores(batch_idx, loss.item(), per_ch_score, 'val',
epoch * self.len_epoch + batch_idx)
if self.args.local_rank == 0:
self.writer.display_terminal(len(self.valid_data_loader), epoch, mode='val', summary=True)
class Trainer:
"""
Trainer class
"""
def __init__(self, args, model, criterion, optimizer, train_data_loader,
valid_data_loader=None, lr_scheduler=None):
self.args = args
self.model = model
self.optimizer = optimizer
self.criterion = criterion
self.train_data_loader = train_data_loader
# epoch-based training
self.len_epoch = len(self.train_data_loader)
self.valid_data_loader = valid_data_loader
self.do_validation = self.valid_data_loader is not None
self.lr_scheduler = lr_scheduler
self.log_step = int(np.sqrt(train_data_loader.batch_size))
self.writer = TensorboardWriter(args)
def training(self):
for epoch in range(1, self.args.nEpochs):
self.train_epoch(epoch)
if self.do_validation:
self.validate_epoch(epoch)
## TODO WRITER SCALARS END OF EPOCH
## TODO SAVE CHECKPOINT
val_loss = str(self.writer.data['val']['loss'] / self.writer.data['val']['count'])
if self.args.save != None:
self.model.save_checkpoint(self.args.save,
epoch, val_loss,
optimizer=self.optimizer,
name=None)
self.writer._write_end_of_epoch(epoch)
# RESET writer data
self.writer.reset('train')
self.writer.reset('val')
def train_epoch(self, epoch):
self.model.train()
n_processed = 0
for batch_idx, input_tuple in enumerate(self.train_data_loader):
self.optimizer.zero_grad()
input_tensor, target = prepare_input(self.args, input_tuple)
input_tensor.requires_grad = True
output = self.model(input_tensor)
loss_dice, per_ch_score = self.criterion(output, target)
loss_dice.backward()
self.optimizer.step()
partial_epoch = epoch + batch_idx / self.len_epoch - 1
self.writer.update_scores(batch_idx, loss_dice.item(), per_ch_score, 'train',
epoch * self.len_epoch + batch_idx)
# TODO display terminal statistics per batch or iteration steps
self.writer.display_terminal(partial_epoch, epoch, 'train')
# END OF EPOCH DISPLAY
self.writer.display_terminal(self.len_epoch, epoch, mode='train', summary=True)
def validate_epoch(self, epoch):
self.model.eval()
for batch_idx, input_tuple in enumerate(self.valid_data_loader):
with torch.no_grad():
input_tensor, target = prepare_input(self.args, input_tuple)
input_tensor.requires_grad = False
output = self.model(input_tensor)
loss, per_ch_score = self.criterion(output, target)
self.writer.update_scores(batch_idx, loss.item(), per_ch_score, 'train',
epoch * self.len_epoch + batch_idx)
self.writer.display_terminal(len(self.valid_data_loader), epoch, mode='train', summary=True)