예제 #1
0
    def __init__(self, assembly, data_dir=None, verbose=True):
        self.assembly = assembly
        self.data_dir = data_dir or get_data_directory()
        self.verbose = verbose

        self.validate_assembly()

        self.log('Data directory: {}'.format(self.data_dir))
        self.log('Host: {}'.format(URI))
예제 #2
0
    def __init__(self, assembly, data_dir=None, verbose=True):
        self.assembly = assembly
        self.data_dir = data_dir or get_data_directory()
        self.verbose = verbose

        self.validate_assembly()

        self.log('Data directory: {}'.format(self.data_dir))
        self.log('Host: {}'.format(URI))
예제 #3
0
def cmd_line():
    parser = argparse.ArgumentParser(description='')
    parser.add_argument('-v', dest='verbose', action='store_true')
    args = parser.parse_args()

    assembly = PROGRAM_TO_ASSEMBLY[parser.prog]
    verbosity = args.verbose
    data_dir = get_data_directory()

    # Do it
    Downloader(assembly, data_dir, verbosity).download_chromosomes()
예제 #4
0
def cmd_line():
    parser = argparse.ArgumentParser(description='')
    parser.add_argument('-v', dest='verbose', action='store_true')
    args = parser.parse_args()

    assembly = PROGRAM_TO_ASSEMBLY[parser.prog]
    verbosity = args.verbose
    data_dir = get_data_directory()

    # Do it
    Downloader(assembly, data_dir, verbosity).download_chromosomes()
예제 #5
0
def cmd_line():
    parser = argparse.ArgumentParser(description='')
    parser.add_argument('-v', dest='verbose', action='store_true')
    parser.add_argument('--uri', dest='uri', default=URI37)
    args = parser.parse_args()
    if parser.prog in SUPPORTED_URIS.keys():
        uri = SUPPORTED_URIS[parser.prog]
    else:
        uri = args.uri
    verbosity = args.verbose
    data_dir = get_data_directory()

    # Do it
    Downloader(uri, data_dir, verbosity).download_chromosomes()
예제 #6
0
def cmd_line():
    parser = argparse.ArgumentParser(description='')
    parser.add_argument('-v', dest='verbose', action='store_true')
    parser.add_argument('--uri', dest='uri', default=URI37)
    args = parser.parse_args()
    if parser.prog in SUPPORTED_URIS.keys():
        uri = SUPPORTED_URIS[parser.prog]
    else:
        uri = args.uri
    verbosity = args.verbose
    data_dir = get_data_directory()

    # Do it
    Downloader(uri, data_dir, verbosity).download_chromosomes()