def genBatch(SysParm):
SysString, N, nPool = SysParm
offset = nPool * N
DataAll = []
start = time.time()
for samp in range(N):
RES = lcs.simulate(SysString, samp + offset)
data = RES[0]
labels = RES[1]
DataAll.append(np.array(RES[0], dtype=np.double))
timeLeft = (N - samp + 1) * ((time.time() - start) / (samp + 1))
#print samp+offset, ', seconds left =', timeLeft, ', minutes left =', timeLeft/60.0
return labels, np.array(DataAll)
def iterate(self):
try:
#seed = int(time.time()) + self.identifier
if self.timeout:
self.data = self.finalize_data(*chemfast_timeout.simulate(
self.system_string, self.timeout))
#self.system_string, seed, self.timeout))
else:
self.data = self.finalize_data(
*chemfast.simulate(self.system_string))
#*chemfast.simulate(self.system_string, seed))
except:
traceback.print_exc(file=sys.stdout)
print 'simulation failed; aborting'
self.bAbort = True
def genBatch(SysParm): SysString, N, nPool = SysParm offset = nPool*N DataAll = [] start = time.time() for samp in range(N): RES = lcs.simulate(SysString, samp+offset) data = RES[0] labels = RES[1] DataAll.append(np.array(RES[0], dtype=np.double)) timeLeft = (N-samp+1)*((time.time()-start)/(samp+1)) #print samp+offset, ', seconds left =', timeLeft, ', minutes left =', timeLeft/60.0 return labels, np.array(DataAll)
def iterate(self): try: #seed = int(time.time()) + self.identifier if self.timeout: self.data = self.finalize_data( *chemfast_timeout.simulate( self.system_string, self.timeout)) #self.system_string, seed, self.timeout)) else: self.data = self.finalize_data( *chemfast.simulate(self.system_string)) #*chemfast.simulate(self.system_string, seed)) except: traceback.print_exc(file=sys.stdout) print 'simulation failed; aborting' self.bAbort = True
