def run(args):
if (len(args) == 0):
folders = ["."]
else:
folders = args
from libtbx.path import walk_source_tree
mod_count_total = 0
mod_file_count = 0
for folder in folders:
for path in walk_source_tree(folder):
if (not path.endswith(".py")): continue
txt = open(path).read()
mod_lines = []
mod_count = 0
for line in txt.splitlines():
ls = line.strip()
if ( ls.startswith("except")
and ls[6:].strip().startswith(":")
and not ls.endswith(" # intentional")):
line = line.replace("except", "except Exception", 1)
mod_count += 1
mod_lines.append(line)
if (mod_count != 0):
print >> open(path, "w"), "\n".join(mod_lines)
mod_count_total += mod_count
mod_file_count += 1
print "Number of modifications: %d in %d files" % (
mod_count_total, mod_file_count)
def run(args, command_name="libtbx.list_files"):
if (len(args) == 0): args = ["."]
command_line = (option_parser(
usage="%s [options] path ..." % command_name,
description="Recursively lists all files,"
" excluding CVS and .svn directories and .pyc files.").option(
"-t",
"--text",
action="store_true",
default=False,
help="list text files only").option(
"-b",
"--binary",
action="store_true",
default=False,
help="list binary files only").option(
"-q",
"--quote",
action="store_true",
default=False,
help="quote file names")).process(args=args)
paths = command_line.args
co = command_line.options
text = co.text
binary = co.binary
quote = co.quote
if (not (text or binary)):
binary = True
text = True
if (len(paths) == 0): paths = ["."]
for path in paths:
if (not os.path.exists(path)):
print("No such file or directory:", path, file=sys.stderr)
elif (os.path.isfile(path)):
show_status(path=path, text=text, binary=binary, quote=quote)
else:
for file_path in walk_source_tree(top=path):
show_status(path=file_path,
text=text,
binary=binary,
quote=quote)
def run(args, command_name="libtbx.list_files"):
if (len(args) == 0): args = ["."]
command_line = (option_parser(
usage="%s [options] path ..." % command_name,
description="Recursively lists all files,"
" excluding CVS and .svn directories and .pyc files.")
.option("-t", "--text",
action="store_true",
default=False,
help="list text files only")
.option("-b", "--binary",
action="store_true",
default=False,
help="list binary files only")
.option("-q", "--quote",
action="store_true",
default=False,
help="quote file names")
).process(args=args)
paths = command_line.args
co = command_line.options
text = co.text
binary = co.binary
quote = co.quote
if (not (text or binary)):
binary = True
text = True
if (len(paths) == 0): paths = ["."]
for path in paths:
if (not os.path.exists(path)):
print >> sys.stderr, "No such file or directory:", path
elif (os.path.isfile(path)):
show_status(path=path, text=text, binary=binary, quote=quote)
else:
for file_path in walk_source_tree(top=path):
show_status(path=file_path, text=text, binary=binary, quote=quote)
def run(args, command_name="libtbx.find_files"):
if (len(args) == 0): args = ["--help"]
command_line = (
option_parser(
usage="%s [options] pattern ..." % command_name,
description="Recursively finds all files matching patterns,\n"
"excluding CVS and .svn directories and .pyc files.").option(
"-t",
"--top",
action="append",
type="string",
metavar="PATH",
help="top-level directory where search starts"
" (default is current working directory)").
option("-g",
"--grep",
action="append",
type="string",
metavar="PATTERN",
help="find regular expression pattern in each file (multiple"
" -g/--grep options can be given)").option(
"-i",
"--ignore_case",
action="store_true",
default=False,
help="with -g/--grep: case-insensitive match").
option(
"-f",
"--file_names_only",
action="store_true",
default=False,
help="with -g/--grep: show file names only, not the matching lines"
).option("-q",
"--quote",
action="store_true",
default=False,
help="quote file names")).process(args=args)
fn_patterns = command_line.args
co = command_line.options
grep_flags = 0
if (co.ignore_case):
grep_flags |= re.IGNORECASE
if (len(fn_patterns) == 0):
fn_patterns = ["*"]
tops = co.top
if (tops is None):
tops = ["."]
for top in tops:
if (not os.path.isdir(top)):
raise Sorry("Not a directory: %s" % show_string(top))
for file_path in walk_source_tree(top=top):
file_name = os.path.basename(file_path)
for fn_pattern in fn_patterns:
if (fnmatch(file_name, fn_pattern)):
if (co.quote): fp = show_string(file_path)
else: fp = file_path
if (co.grep is None):
print(fp)
else:
is_binary_file = co.file_names_only
for line in read_lines_if_possible(
file_path=file_path):
if (not is_binary_file):
is_binary_file = "\0" in line
def line_matches_all_grep_patterns():
for grep_pattern in co.grep:
if (re.search(pattern=grep_pattern,
string=line,
flags=grep_flags) is None):
return False
return True
if (line_matches_all_grep_patterns()):
if (co.file_names_only):
print(fp)
break
elif (is_binary_file):
print("%s: match in binary file" % fp)
break
else:
print("%s: %s" % (fp, line))
def run(args, command_name="libtbx.find_files"):
if len(args) == 0:
args = ["--help"]
command_line = (
option_parser(
usage="%s [options] pattern ..." % command_name,
description="Recursively finds all files matching patterns,\n"
"excluding CVS and .svn directories and .pyc files.",
)
.option(
"-t",
"--top",
action="append",
type="string",
metavar="PATH",
help="top-level directory where search starts" " (default is current working directory)",
)
.option(
"-g",
"--grep",
action="append",
type="string",
metavar="PATTERN",
help="find regular expression pattern in each file (multiple" " -g/--grep options can be given)",
)
.option(
"-i", "--ignore_case", action="store_true", default=False, help="with -g/--grep: case-insensitive match"
)
.option(
"-f",
"--file_names_only",
action="store_true",
default=False,
help="with -g/--grep: show file names only, not the matching lines",
)
.option("-q", "--quote", action="store_true", default=False, help="quote file names")
).process(args=args)
fn_patterns = command_line.args
co = command_line.options
grep_flags = 0
if co.ignore_case:
grep_flags |= re.IGNORECASE
if len(fn_patterns) == 0:
fn_patterns = ["*"]
tops = co.top
if tops is None:
tops = ["."]
for top in tops:
if not os.path.isdir(top):
raise Sorry("Not a directory: %s" % show_string(top))
for file_path in walk_source_tree(top=top):
file_name = os.path.basename(file_path)
for fn_pattern in fn_patterns:
if fnmatch(file_name, fn_pattern):
if co.quote:
fp = show_string(file_path)
else:
fp = file_path
if co.grep is None:
print fp
else:
is_binary_file = co.file_names_only
for line in read_lines_if_possible(file_path=file_path):
if not is_binary_file:
is_binary_file = "\0" in line
def line_matches_all_grep_patterns():
for grep_pattern in co.grep:
if re.search(pattern=grep_pattern, string=line, flags=grep_flags) is None:
return False
return True
if line_matches_all_grep_patterns():
if co.file_names_only:
print fp
break
elif is_binary_file:
print "%s: match in binary file" % fp
break
else:
print "%s: %s" % (fp, line)
