def write_module_info(f, module_object):
file_name = module_object.__file__
if (file_name.endswith(".pyc")):
file_name = file_name[:-1]
assert file_name.endswith(".py")
file_content = open(file_name, "rb").read()
m = hashlib_md5()
m.update(file_content)
print >> f, "// Module:", module_object.__name__
print >> f, "// size:", len(file_content)
print >> f, "// MD5 hexdigest:", m.hexdigest()
print >> f
def write_module_info(f, module_object):
file_name = module_object.__file__
if (file_name.endswith(".pyc")):
file_name = file_name[:-1]
assert file_name.endswith(".py")
file_content = open(file_name, "rb").read()
m = hashlib_md5()
m.update(file_content)
print >> f, "// Module:", module_object.__name__
print >> f, "// size:", len(file_content)
print >> f, "// MD5 hexdigest:", m.hexdigest()
print >> f
def save_file(self, input_file=None, file_name=None):
if (input_file is None):
input_file = self.open_file(file_name)
input_file.check_file_type(self.file_type)
file_name = input_file.file_name
self._cached_input_files[file_name] = input_file
self.add_file_callback(file_name)
if self.use_md5_sum :
file_records = open(file_name).read()
m = hashlib_md5(file_records)
self._file_md5sums[file_name] = m
else :
mtime = os.path.getmtime(file_name)
self._file_mtimes[file_name] = mtime
return self.save_other_file_data(input_file)
def save_file(self, input_file=None, file_name=None):
if input_file is None:
input_file = self.open_file(file_name)
input_file.check_file_type(self.file_type)
file_name = input_file.file_name
self._cached_input_files[file_name] = input_file
self.add_file_callback(file_name)
if self.use_md5_sum:
file_records = open(file_name).read()
m = hashlib_md5(file_records)
self._file_md5sums[file_name] = m
else:
mtime = os.path.getmtime(file_name)
self._file_mtimes[file_name] = mtime
return self.save_other_file_data(input_file)
def exercise_input_pickling():
pdb_inp = pdb.pdb_input(source_info="file/name",
lines=pdb_string_all_sections)
s = pickle.dumps(pdb_inp, 1)
l = pickle.loads(s)
assert not show_diff(l.as_pdb_string(), pdb_inp.as_pdb_string())
assert l.source_info() == "pickle"
for section in pdb.input_sections:
assert not show_diff("\n".join(getattr(l, section)()), "\n".join(
getattr(pdb_inp, section)()))
s = "\n".join(l.__getinitargs__()[1])
d = hashlib_md5(s).hexdigest()
if (pdb.hierarchy.atom.has_siguij()):
assert d == "bf987c40cc8672e2f2324d91d6de3e2b"
else:
assert d == "7375e96fd52794a785284580730de20c"
def exercise_input_pickling():
pdb_inp = pdb.pdb_input(source_info="file/name", lines=pdb_string_all_sections)
for p in [pickle, cPickle]:
s = p.dumps(pdb_inp, 1)
l = p.loads(s)
assert not show_diff(l.as_pdb_string(), pdb_inp.as_pdb_string())
assert l.source_info() == "pickle"
for section in pdb.input_sections:
assert not show_diff(
"\n".join(getattr(l, section)()),
"\n".join(getattr(pdb_inp, section)()))
s = "\n".join(l.__getinitargs__()[1])
d = hashlib_md5(s).hexdigest()
if (pdb.hierarchy.atom.has_siguij()):
assert d == "bf987c40cc8672e2f2324d91d6de3e2b"
else:
assert d == "7375e96fd52794a785284580730de20c"
def file_is_modified(self, file_name):
if (not self.auto_reload_files):
return False
elif (not file_name in self._cached_input_files):
return True
elif self.use_md5_sum :
file_records = open(file_name).read()
m = hashlib_md5(file_records)
old_md5sum = self._file_md5sums.get(file_name, None)
if (old_md5sum is None) or (old_md5sum != m):
self._file_md5sums[file_name] = m
return True
else :
mtime = os.path.getmtime(file_name)
old_mtime = self._file_mtimes.get(file_name, None)
if (old_mtime is None) or (old_mtime < mtime):
self._file_mtimes[file_name] = mtime
return True
return False
def file_is_modified(self, file_name):
if not self.auto_reload_files:
return False
elif not file_name in self._cached_input_files:
return True
elif self.use_md5_sum:
file_records = open(file_name).read()
m = hashlib_md5(file_records)
old_md5sum = self._file_md5sums.get(file_name, None)
if (old_md5sum is None) or (old_md5sum != m):
self._file_md5sums[file_name] = m
return True
else:
mtime = os.path.getmtime(file_name)
old_mtime = self._file_mtimes.get(file_name, None)
if (old_mtime is None) or (old_mtime < mtime):
self._file_mtimes[file_name] = mtime
return True
return False
def current_md5(self, path_prefix=None):
full_path = self.full_path(path_prefix=path_prefix)
if (not os.path.exists(full_path)): return None
m = hashlib_md5()
m.update(open(full_path, "rb").read())
return m.hexdigest()
def bool_md5(self): result = hashlib_md5() result.update(self.__getstate__()[1]) return result
def gethash(longstring): m = hashlib_md5() m.update(longstring) return "".join(["%02X"%ord(i) for i in m.digest()])
def bool_md5(self):
result = hashlib_md5()
result.update(self.__getstate__()[1])
return result
def compute_hexdigest(text): from libtbx.utils import hashlib_md5 m = hashlib_md5() m.update(text) return m.hexdigest()
def gethash(longstring): m = hashlib_md5() m.update(longstring) return "".join(["%02X"%ord(i) for i in m.digest()])
def current_md5(self, path_prefix=None): full_path = self.full_path(path_prefix=path_prefix) if (not os.path.exists(full_path)): return None m = hashlib_md5() m.update(open(full_path, "rb").read()) return m.hexdigest()
def compute_hexdigest(text):
from libtbx.utils import hashlib_md5
m = hashlib_md5()
m.update(text)
return m.hexdigest()