def test_robot_uuid_value(app):
with app.app_context():
with raises(ValidationError):
RobotUUID(RobotSerialNumber({})).value
RobotUUID(RobotSerialNumber({"test": "another test"})).value
with raises(RetrievalError):
RobotUUID(RobotSerialNumber({FIELD_EVENT_ROBOT: "1234"})).value
uuid = app.config["BIOSERO_ROBOTS"]["CPA"]["uuid"]
assert RobotUUID(RobotSerialNumber({FIELD_EVENT_ROBOT: "CPA"})).value == uuid
def initialize_event(self, params: Dict[str, str]) -> None:
super().initialize_event(params=params)
self._event_type = params["event_type"]
self.properties["plate_barcode"] = PlateBarcode(params)
self.properties["failure_type"] = FailureType(params)
self.properties["user_id"] = UserID(params)
for property_name in ["plate_barcode", "failure_type", "user_id"]:
self.properties[property_name].is_valid()
self.properties["destination_plate"] = self.properties["plate_barcode"]
self.properties["wells"] = WellsFromDestination(
self.properties["plate_barcode"])
self.properties["source_plates"] = SourcePlatesFromDestination(
self.properties["wells"])
self.properties["samples"] = SamplesFromDestination(
self.properties["wells"])
self.properties["samples_with_cog_uk_id"] = SamplesWithCogUkId(
self.properties["samples"])
self.properties["controls"] = ControlsFromDestination(
self.properties["wells"])
self.properties["run_id"] = RunIDFromWells(self.properties["wells"])
self.properties["run_info"] = RunInfo(self.properties["run_id"])
self.properties["automation_system_name"] = AutomationSystemName(
self.properties["run_info"])
self.properties["robot_uuid"] = RobotUUID(
self.properties["automation_system_name"])
def initialize_event(self, params: Dict[str, str]) -> None:
super().initialize_event(params=params)
self._event_type = params["event_type"]
self.properties["run_id"] = RunID(params)
for property_name in ["run_id"]:
self.properties[property_name].is_valid()
self.properties["run_info"] = RunInfo(self.properties["run_id"])
self.properties["user_id"] = UserID(self.properties["run_info"])
self.properties["automation_system_name"] = AutomationSystemName(self.properties["run_info"])
self.properties["robot_uuid"] = RobotUUID(self.properties["automation_system_name"])
def test_robot_uuid_errors(app):
with app.app_context():
# After success
robot = RobotUUID(RobotSerialNumber({FIELD_EVENT_ROBOT: "CPA"}))
robot.value
assert len(robot.errors) == 0
# After is_valid false
robot = RobotUUID(RobotSerialNumber({FIELD_EVENT_ROBOT: "12 34"}))
robot.is_valid()
assert len(robot.errors) > 0
# After retrieval error
robot = RobotUUID(RobotSerialNumber({FIELD_EVENT_ROBOT: "1234"}))
with raises(RetrievalError):
robot.value
assert len(robot.errors) > 0
def initialize_event(self, params: Dict[str, str]) -> None:
super().initialize_event(params=params)
self._event_type = params["event_type"]
self.properties["plate_barcode"] = PlateBarcode(params)
self.properties["run_id"] = RunID(params)
for property_name in ["plate_barcode", "run_id"]:
self.properties[property_name].is_valid()
self.properties["run_info"] = RunInfo(self.properties["run_id"])
self.properties["source_plate_uuid"] = SourcePlateUUID(self.properties["plate_barcode"])
self.properties["user_id"] = UserID(self.properties["run_info"])
self.properties["automation_system_name"] = AutomationSystemName(self.properties["run_info"])
self.properties["robot_uuid"] = RobotUUID(self.properties["automation_system_name"])
self.properties["all_samples"] = SamplesFromSource(self.properties["plate_barcode"])
def initialize_event(self, params: Dict[str, str]) -> None:
super().initialize_event(params=params)
self._event_type = params["event_type"]
self.properties["plate_barcode"] = PlateBarcode(params)
self.properties["run_id"] = RunID(params)
for property_name in ["plate_barcode", "run_id"]:
self.properties[property_name].is_valid()
self.properties["run_info"] = RunInfo(self.properties["run_id"])
self.properties["user_id"] = UserID(self.properties["run_info"])
self.properties["automation_system_name"] = AutomationSystemName(
self.properties["run_info"])
self.properties["robot_uuid"] = RobotUUID(
self.properties["automation_system_name"])
self.properties["barcode_no_plate_map_data"] = BarcodeNoPlateMapData(
params)
def test_robot_uuid_is_valid(app):
assert RobotUUID(RobotSerialNumber({})).is_valid() is False
assert RobotUUID(RobotSerialNumber({"test": "another test"})).is_valid() is False
assert RobotUUID(RobotSerialNumber({FIELD_EVENT_ROBOT: "1234"})).is_valid() is True
def test_robot_uuid_new(app):
assert RobotUUID(RobotSerialNumber({})) is not None
assert RobotUUID(RobotSerialNumber({"test": "a test"})) is not None
assert RobotUUID(RobotSerialNumber({FIELD_EVENT_ROBOT: "a test"})) is not None