def test_get_ligolw_element():
from ligo.lw.ligolw import (Document, LIGO_LW)
xmldoc = Document()
llw = xmldoc.appendChild(LIGO_LW())
assert io_ligolw.get_ligolw_element(llw) is llw
assert io_ligolw.get_ligolw_element(xmldoc) is llw
with pytest.raises(ValueError):
io_ligolw.get_ligolw_element(Document())
def test_get_ligolw_element():
from ligo.lw.ligolw import (Document, LIGO_LW)
xmldoc = Document()
llw = xmldoc.appendChild(LIGO_LW())
assert io_ligolw.get_ligolw_element(llw) is llw
assert io_ligolw.get_ligolw_element(xmldoc) is llw
with pytest.raises(ValueError):
io_ligolw.get_ligolw_element(Document())
def llwtable():
from ligo.lw.ligolw import (Document, LIGO_LW)
# build dummy document with two tables
xmldoc = Document()
llw = xmldoc.appendChild(LIGO_LW())
tables = [new_table('process'), new_table('sngl_ringdown')]
for t in tables:
llw.appendChild(t)
return xmldoc
def llwtable():
from ligo.lw.ligolw import (Document, LIGO_LW)
# build dummy document with two tables
xmldoc = Document()
llw = xmldoc.appendChild(LIGO_LW())
tables = [new_table('process'), new_table('sngl_ringdown')]
for t in tables:
llw.appendChild(t)
return xmldoc
def write_tables(target, tables, append=False, overwrite=False, **kwargs):
"""Write an LIGO_LW table to file
Parameters
----------
target : `str`, `file`, :class:`~ligo.lw.ligolw.Document`
the file or document to write into
tables : `list`, `tuple` of :class:`~ligo.lw.table.Table`
the tables to write
append : `bool`, optional, default: `False`
if `True`, append to an existing file/table, otherwise `overwrite`
overwrite : `bool`, optional, default: `False`
if `True`, delete an existing instance of the table type, otherwise
append new rows
**kwargs
other keyword arguments to pass to
:func:`~ligo.lw.utils.load_filename`, or
:func:`~ligo.lw.utils.load_fileobj` as appropriate
"""
from ligo.lw.ligolw import (Document, LIGO_LW, LIGOLWContentHandler)
from ligo.lw import utils as ligolw_utils
# allow writing directly to XML
if isinstance(target, (Document, LIGO_LW)):
xmldoc = target
# open existing document, if possible
elif append:
xmldoc = open_xmldoc(target,
contenthandler=kwargs.pop('contenthandler',
LIGOLWContentHandler))
# fail on existing document and not overwriting
elif (not overwrite and isinstance(target, str)
and os.path.isfile(target)):
raise IOError("File exists: {}".format(target))
else: # or create a new document
xmldoc = Document()
# convert table to format
write_tables_to_document(xmldoc, tables, overwrite=overwrite)
# find writer function and target filename
if isinstance(target, FILE_LIKE):
writer = ligolw_utils.write_fileobj
name = target.name
else:
writer = ligolw_utils.write_filename
name = str(target)
# handle gzip compression kwargs
if name.endswith('.gz') and writer.__module__.startswith('glue'):
kwargs.setdefault('gz', True)
elif name.endswith('.gz'):
kwargs.setdefault('compress', 'gz')
# write XML
writer(xmldoc, target, **kwargs)
def read_ligolw(source, contenthandler=LIGOLWContentHandler, **kwargs):
"""Read one or more LIGO_LW format files
Parameters
----------
source : `str`, `file`
the open file or file path to read
contenthandler : `~xml.sax.handler.ContentHandler`, optional
content handler used to parse document
verbose : `bool`, optional
be verbose when reading files, default: `False`
Returns
-------
xmldoc : :class:`~ligo.lw.ligolw.Document`
the document object as parsed from the file(s)
"""
from ligo.lw.ligolw import Document
from ligo.lw import types
from ligo.lw.lsctables import use_in
from ligo.lw.utils import (load_url, ligolw_add)
# mock ToPyType to link to numpy dtypes
topytype = types.ToPyType.copy()
for key in types.ToPyType:
if key in types.ToNumPyType:
types.ToPyType[key] = numpy.dtype(types.ToNumPyType[key]).type
contenthandler = use_in(contenthandler)
# read one or more files into a single Document
source = file_list(source)
try:
if len(source) == 1:
return load_url(source[0], contenthandler=contenthandler, **kwargs)
return ligolw_add.ligolw_add(Document(),
source,
contenthandler=contenthandler,
**kwargs)
except LigolwElementError as exc:
# failed to read with ligo.lw,
# try again with glue.ligolw (ilwdchar_compat)
if LIGO_LW_COMPAT_ERROR.search(str(exc)):
try:
return read_ligolw(source,
contenthandler=contenthandler,
ilwdchar_compat=True,
**kwargs)
except Exception: # if fails for any reason, use original error
pass
raise
finally: # replace ToPyType
types.ToPyType = topytype
def open_xmldoc(fobj, **kwargs):
"""Try and open an existing LIGO_LW-format file, or create a new Document
Parameters
----------
fobj : `str`, `file`
file path or open file object to read
**kwargs
other keyword arguments to pass to
:func:`~ligo.lw.utils.load_filename`, or
:func:`~ligo.lw.utils.load_fileobj` as appropriate
Returns
--------
xmldoc : :class:`~ligo.lw.ligolw.Document`
either the `Document` as parsed from an existing file, or a new, empty
`Document`
"""
from ligo.lw.ligolw import (Document, LIGOLWContentHandler)
from ligo.lw.lsctables import use_in
from ligo.lw.utils import (load_filename, load_fileobj)
use_in(kwargs.setdefault('contenthandler', LIGOLWContentHandler))
try: # try and load existing file
if isinstance(fobj, str):
return load_filename(fobj, **kwargs)
if isinstance(fobj, FILE_LIKE):
return load_fileobj(fobj, **kwargs)[0]
except (OSError, IOError): # or just create a new Document
return Document()
except LigolwElementError as exc:
if LIGO_LW_COMPAT_ERROR.search(str(exc)):
try:
return open_xmldoc(fobj, ilwdchar_compat=True, **kwargs)
except Exception: # for any reason, raise original
pass
raise