def test_phaseDiagramDefinitions(self):
base = "EKEKEKEKEKEKEK"
sequences = []
phaseplotreg = []
for extender in ['E', 'K', 'G', 'GK', 'GE']:
for i in range(0, 50):
if i > 20:
if i % 2 == 0:
continue
if i > 30:
if i % 3 == 0:
continue
sequences.append(
sequenceParameters.SequenceParameters(base + extender * i))
phaseplotreg.append(
sequenceParameters.SequenceParameters(
base + extender * i).get_phasePlotRegion())
plots.save_multiple_phasePlot2(
sequences, 'tmpfiles/check_phasePlot_regions_match', phaseplotreg)
def test_phaseDiagramDefinitions(self):
base = "EKEKEKEKEKEKEK"
sequences = []
phaseplotreg = []
for extender in ['E', 'K', 'G', 'GK', 'GE']:
for i in range(0, 50):
if i > 20:
if i % 2 == 0:
continue
if i > 30:
if i % 3 == 0:
continue
sequences.append(
sequenceParameters.SequenceParameters(
base + extender * i))
phaseplotreg.append(
sequenceParameters.SequenceParameters(
base + extender * i).get_phasePlotRegion())
plots.save_multiple_phasePlot2(
sequences,
'tmpfiles/check_phasePlot_regions_match',
phaseplotreg)
def test_save_multiple_phasePlot2(self):
rseq2 = sequenceParameters.SequenceParameters(testTools.generate_random_sequence(minLen=20, maxLen=500))
plots.save_multiple_phasePlot2([self.rseq, rseq2], "tmpfiles/mult_PP", ["a", "b"], "TEST TITLE")
plots.save_multiple_phasePlot2(
[self.rseq, rseq2], "tmpfiles/mult_PP_NO_LEGEND", ["a", "b"], "TEST TITLE", False
)
plots.save_multiple_phasePlot2(
[self.rseq, rseq2],
"tmpfiles/mult_PP_NO_LEGEND_xLim1",
["a", "b"],
title="TEST TITLE",
legendOn=False,
xLim=1,
)
plots.save_multiple_phasePlot2(
[self.rseq, rseq2],
"tmpfiles/mult_PP_NO_LEGEND_xlim2",
["a", "b"],
title="TEST TITLE",
legendOn=False,
xLim=2,
)
plots.save_multiple_phasePlot2(
[self.rseq, rseq2],
"tmpfiles/mult_PP_NO_LEGEND_xlim2_ylim2",
["a", "b"],
title="TEST TITLE",
legendOn=False,
xLim=2,
yLim=2,
)
plots.save_multiple_phasePlot2(
[self.rseq, rseq2],
"tmpfiles/mult_PP_NO_LEGEND_xlim2_ylim2_fs_20",
["a", "b"],
title="TEST TITLE",
legendOn=False,
xLim=2,
yLim=2,
fontSize=20,
)
def test_save_multiple_phasePlot2(self):
rseq2 = sequenceParameters.SequenceParameters(
testTools.generate_random_sequence(minLen=20, maxLen=500))
plots.save_multiple_phasePlot2(
[self.rseq, rseq2], 'tmpfiles/mult_PP', ['a', 'b'], 'TEST TITLE')
plots.save_multiple_phasePlot2(
[self.rseq, rseq2], 'tmpfiles/mult_PP_NO_LEGEND', ['a', 'b'], 'TEST TITLE', False)
plots.save_multiple_phasePlot2([self.rseq,
rseq2],
'tmpfiles/mult_PP_NO_LEGEND_xLim1.png',
['a',
'b'],
title='TEST TITLE',
legendOn=False,
xLim=1)
plots.save_multiple_phasePlot2([self.rseq,
rseq2],
'tmpfiles/mult_PP_NO_LEGEND_xlim2.png',
['a',
'b'],
title='TEST TITLE',
legendOn=False,
xLim=2)
plots.save_multiple_phasePlot2([self.rseq,
rseq2],
'tmpfiles/mult_PP_NO_LEGEND_xlim2_ylim2.png',
['a',
'b'],
title='TEST TITLE',
legendOn=False,
xLim=2,
yLim=2)
plots.save_multiple_phasePlot2([self.rseq,
rseq2],
'tmpfiles/mult_PP_NO_LEGEND_xlim2_ylim2_fs_20.png',
['a',
'b'],
title='TEST TITLE',
legendOn=False,
xLim=2,
yLim=2,
fontSize=20)
plots.save_multiple_phasePlot2([self.rseq,
rseq2],
'tmpfiles/mult_PP_NO_LEGEND_xlim2_ylim2_fs_20.pdf',
['a',
'b'],
title='TEST TITLE',
legendOn=False,
xLim=2,
yLim=2,
fontSize=20,
saveFormat='pdf')