def makeSourceCat(self, distortedWcs):
"""Make a source catalog by reading the position reference stars and distorting the positions
"""
loadRes = self.refObjLoader.loadPixelBox(bbox=self.bbox,
wcs=distortedWcs,
filterName="r")
refCat = loadRes.refCat
refCentroidKey = afwTable.Point2DKey(refCat.schema["centroid"])
refFluxRKey = refCat.schema["r_flux"].asKey()
sourceSchema = afwTable.SourceTable.makeMinimalSchema()
measBase.SingleFrameMeasurementTask(
schema=sourceSchema) # expand the schema
sourceCat = afwTable.SourceCatalog(sourceSchema)
sourceCentroidKey = afwTable.Point2DKey(sourceSchema["slot_Centroid"])
sourceInstFluxKey = sourceSchema["slot_ApFlux_instFlux"].asKey()
sourceInstFluxErrKey = sourceSchema["slot_ApFlux_instFluxErr"].asKey()
sourceCat.reserve(len(refCat))
for refObj in refCat:
src = sourceCat.addNew()
src.set(sourceCentroidKey, refObj.get(refCentroidKey))
src.set(sourceInstFluxKey, refObj.get(refFluxRKey))
src.set(sourceInstFluxErrKey, refObj.get(refFluxRKey) / 100)
return sourceCat
def setUp(self):
# make a nominal match list where the distances are 0; test can then modify
# source centroid, reference coord or distance field for each match, as desired
self.wcs = afwGeom.makeSkyWcs(crpix=lsst.geom.Point2D(1500, 1500),
crval=lsst.geom.SpherePoint(215.5, 53.0, lsst.geom.degrees),
cdMatrix=afwGeom.makeCdMatrix(scale=5.1e-5*lsst.geom.degrees))
self.bboxD = lsst.geom.Box2D(lsst.geom.Point2D(10, 100), lsst.geom.Extent2D(1000, 1500))
self.numMatches = 25
sourceSchema = afwTable.SourceTable.makeMinimalSchema()
# add centroid (and many other unwanted fields) to sourceSchema
SingleFrameMeasurementTask(schema=sourceSchema)
self.sourceCentroidKey = afwTable.Point2DKey(sourceSchema["slot_Centroid"])
self.sourceCat = afwTable.SourceCatalog(sourceSchema)
refSchema = afwTable.SourceTable.makeMinimalSchema()
self.refCoordKey = afwTable.CoordKey(refSchema["coord"])
self.refCat = afwTable.SourceCatalog(refSchema)
self.matchList = []
np.random.seed(5)
pixPointList = [lsst.geom.Point2D(pos) for pos in
np.random.random_sample([self.numMatches, 2])*self.bboxD.getDimensions() +
self.bboxD.getMin()]
for pixPoint in pixPointList:
src = self.sourceCat.addNew()
src.set(self.sourceCentroidKey, pixPoint)
ref = self.refCat.addNew()
ref.set(self.refCoordKey, self.wcs.pixelToSky(pixPoint))
match = afwTable.ReferenceMatch(ref, src, 0)
self.matchList.append(match)
def loadData(self, rangePix=3000, numPoints=25):
"""Load catalogs and make the match list
This is a separate function so data can be reloaded if fitting more than once
(each time a WCS is fit it may update the source catalog, reference catalog and match list)
"""
refSchema = LoadReferenceObjectsTask.makeMinimalSchema(
filterNameList=["r"], addIsPhotometric=True, addCentroid=True)
self.refCat = afwTable.SimpleCatalog(refSchema)
srcSchema = afwTable.SourceTable.makeMinimalSchema()
SingleFrameMeasurementTask(schema=srcSchema)
self.srcCoordKey = afwTable.CoordKey(srcSchema["coord"])
self.srcCentroidKey = afwTable.Point2DKey(srcSchema["slot_Centroid"])
self.srcCentroidKey_xErr = srcSchema["slot_Centroid_xErr"].asKey()
self.srcCentroidKey_yErr = srcSchema["slot_Centroid_yErr"].asKey()
self.sourceCat = afwTable.SourceCatalog(srcSchema)
self.matches = []
for i in np.linspace(0., rangePix, numPoints):
for j in np.linspace(0., rangePix, numPoints):
src = self.sourceCat.addNew()
refObj = self.refCat.addNew()
src.set(self.srcCentroidKey, lsst.geom.Point2D(i, j))
src.set(self.srcCentroidKey_xErr, 0.1)
src.set(self.srcCentroidKey_yErr, 0.1)
c = self.tanWcs.pixelToSky(i, j)
refObj.setCoord(c)
self.matches.append(self.MatchClass(refObj, src, 0.0))
def makeCatalog(self, apCorrScale=1.0, numSources=5):
sourceCat = afwTable.SourceCatalog(self.schema)
fluxName = self.name + "_flux"
flagName = self.name + "_flag"
fluxSigmaName = self.name + "_fluxSigma"
apFluxName = self.apname + "_flux"
apFlagName = self.apname + "_flag"
apFluxSigmaName = self.apname + "_fluxSigma"
fluxKey = self.schema.find(fluxName).key
flagKey = self.schema.find(flagName).key
fluxSigmaKey = self.schema.find(fluxSigmaName).key
apFluxKey = self.schema.find(apFluxName).key
apFlagKey = self.schema.find(apFlagName).key
apFluxSigmaKey = self.schema.find(apFluxSigmaName).key
centroidKey = afwTable.Point2DKey(self.schema["slot_Centroid"])
inputFilterFlagKey = self.schema.find(self.meas_apCorr_task.config.sourceSelector.active.field).key
x = np.random.rand(numSources)*self.exposure.getWidth() + self.exposure.getX0()
y = np.random.rand(numSources)*self.exposure.getHeight() + self.exposure.getY0()
for _i in range(numSources):
source_test_flux = 5.1
source_test_centroid = afwGeom.Point2D(x[_i], y[_i])
source = sourceCat.addNew()
source.set(fluxKey, source_test_flux)
source.set(apFluxKey, source_test_flux * apCorrScale)
source.set(centroidKey, source_test_centroid)
source.set(fluxSigmaKey, 0.)
source.set(apFluxSigmaKey, 0.)
source.set(flagKey, False)
source.set(apFlagKey, False)
source.set(inputFilterFlagKey, True)
return(sourceCat)
def testUsedFlag(self):
"""Test that the solver will record number of sources used to table
if it is passed a schema on initialization.
"""
distortedWcs = afwImage.DistortedTanWcs(self.tanWcs,
afwGeom.IdentityXYTransform())
self.exposure.setWcs(distortedWcs)
loadRes = self.refObjLoader.loadPixelBox(bbox=self.bbox,
wcs=distortedWcs,
filterName="r")
refCat = loadRes.refCat
refCentroidKey = afwTable.Point2DKey(refCat.schema["centroid"])
refFluxRKey = refCat.schema["r_flux"].asKey()
sourceSchema = afwTable.SourceTable.makeMinimalSchema()
measBase.SingleFrameMeasurementTask(
schema=sourceSchema) # expand the schema
config = AstrometryTask.ConfigClass()
config.wcsFitter.order = 2
config.wcsFitter.numRejIter = 0
# schema must be passed to the solver task constructor
solver = AstrometryTask(config=config,
refObjLoader=self.refObjLoader,
schema=sourceSchema)
sourceCat = afwTable.SourceCatalog(sourceSchema)
sourceCentroidKey = afwTable.Point2DKey(sourceSchema["slot_Centroid"])
sourceFluxKey = sourceSchema["slot_ApFlux_flux"].asKey()
sourceFluxSigmaKey = sourceSchema["slot_ApFlux_fluxSigma"].asKey()
for refObj in refCat:
src = sourceCat.addNew()
src.set(sourceCentroidKey, refObj.get(refCentroidKey))
src.set(sourceFluxKey, refObj.get(refFluxRKey))
src.set(sourceFluxSigmaKey, refObj.get(refFluxRKey) / 100)
results = solver.run(
sourceCat=sourceCat,
exposure=self.exposure,
)
# check that the used flag is set the right number of times
count = 0
for source in sourceCat:
if source.get('calib_astrometryUsed'):
count += 1
self.assertEqual(count, len(results.matches))
def doTest(self, pixelsToTanPixels, order=3):
"""Test using pixelsToTanPixels to distort the source positions
"""
distortedWcs = afwGeom.makeModifiedWcs(pixelTransform=pixelsToTanPixels, wcs=self.tanWcs,
modifyActualPixels=False)
self.exposure.setWcs(distortedWcs)
sourceCat = self.makeSourceCat(distortedWcs)
config = AstrometryTask.ConfigClass()
config.wcsFitter.order = order
config.wcsFitter.numRejIter = 0
solver = AstrometryTask(config=config, refObjLoader=self.refObjLoader)
results = solver.run(
sourceCat=sourceCat,
exposure=self.exposure,
)
fitWcs = self.exposure.getWcs()
self.assertRaises(Exception, self.assertWcsAlmostEqualOverBBox, fitWcs, distortedWcs)
self.assertWcsAlmostEqualOverBBox(distortedWcs, fitWcs, self.bbox,
maxDiffSky=0.01*afwGeom.arcseconds, maxDiffPix=0.02)
srcCoordKey = afwTable.CoordKey(sourceCat.schema["coord"])
refCoordKey = afwTable.CoordKey(results.refCat.schema["coord"])
refCentroidKey = afwTable.Point2DKey(results.refCat.schema["centroid"])
maxAngSep = afwGeom.Angle(0)
maxPixSep = 0
for refObj, src, d in results.matches:
refCoord = refObj.get(refCoordKey)
refPixPos = refObj.get(refCentroidKey)
srcCoord = src.get(srcCoordKey)
srcPixPos = src.getCentroid()
angSep = refCoord.separation(srcCoord)
maxAngSep = max(maxAngSep, angSep)
pixSep = math.hypot(*(srcPixPos-refPixPos))
maxPixSep = max(maxPixSep, pixSep)
print("max angular separation = %0.4f arcsec" % (maxAngSep.asArcseconds(),))
print("max pixel separation = %0.3f" % (maxPixSep,))
self.assertLess(maxAngSep.asArcseconds(), 0.0026)
self.assertLess(maxPixSep, 0.015)
# try again, but without fitting the WCS
config.forceKnownWcs = True
solverNoFit = AstrometryTask(config=config, refObjLoader=self.refObjLoader)
self.exposure.setWcs(distortedWcs)
resultsNoFit = solverNoFit.run(
sourceCat=sourceCat,
exposure=self.exposure,
)
self.assertIsNone(resultsNoFit.scatterOnSky)
# fitting should result in matches that are at least as good
# (strictly speaking fitting might result in a larger match list with
# some outliers, but in practice this test passes)
meanFitDist = np.mean([match.distance for match in results.matches])
meanNoFitDist = np.mean([match.distance for match in resultsNoFit.matches])
self.assertLessEqual(meanFitDist, meanNoFitDist)
def __init__(self, config, name, schemaMapper, metadata):
ForcedPlugin.__init__(self, config, name, schemaMapper, metadata)
schema = schemaMapper.editOutputSchema()
# Allocate x and y fields, join these into a single FunctorKey for ease-of-use.
xKey = schema.addField(name + "_x", type="D", doc="transformed reference centroid column",
units="pixel")
yKey = schema.addField(name + "_y", type="D", doc="transformed reference centroid row",
units="pixel")
self.centroidKey = afwTable.Point2DKey(xKey, yKey)
def initializeSourceCatalog(schema=None, name=None, flux=None, sigma=None, centroid=None):
fluxName = name + "_flux"
fluxSigmaName = name + "_fluxSigma"
fluxKey = schema.find(fluxName).key
centroidKey = afwTable.Point2DKey(schema["slot_Centroid"])
sourceCat = afwTable.SourceCatalog(schema)
source = sourceCat.addNew()
source.set(fluxKey, flux)
source.set(fluxSigmaName, sigma)
source.set(centroidKey, centroid)
return(sourceCat)
def initializeSourceCatalog(schema=None, name=None, instFlux=None, sigma=None, centroid=None):
instFluxName = name + "_instFlux"
instFluxErrName = name + "_instFluxErr"
instFluxKey = schema.find(instFluxName).key
centroidKey = afwTable.Point2DKey(schema["slot_Centroid"])
sourceCat = afwTable.SourceCatalog(schema)
source = sourceCat.addNew()
source.set(instFluxKey, instFlux)
source.set(instFluxErrName, sigma)
source.set(centroidKey, centroid)
return(sourceCat)
def setUp(self):
# make a nominal match list where the distances are 0; test can then modify
# source centroid, reference coord or distance field for each match, as desired
ctrPix = afwGeom.Point2I(1500, 1500)
metadata = PropertySet()
metadata.set("RADECSYS", "FK5")
metadata.set("EQUINOX", 2000.0)
metadata.set("CTYPE1", "RA---TAN")
metadata.set("CTYPE2", "DEC--TAN")
metadata.set("CUNIT1", "deg")
metadata.set("CUNIT2", "deg")
metadata.set("CRVAL1", 215.5)
metadata.set("CRVAL2", 53.0)
metadata.set("CRPIX1", ctrPix[0] + 1)
metadata.set("CRPIX2", ctrPix[1] + 1)
metadata.set("CD1_1", 5.1e-05)
metadata.set("CD1_2", 0.0)
metadata.set("CD2_2", -5.1e-05)
metadata.set("CD2_1", 0.0)
self.wcs = afwImage.makeWcs(metadata)
self.bboxD = afwGeom.Box2D(afwGeom.Point2D(10, 100),
afwGeom.Extent2D(1000, 1500))
self.numMatches = 25
sourceSchema = afwTable.SourceTable.makeMinimalSchema()
# add centroid (and many other unwanted fields) to sourceSchema
SingleFrameMeasurementTask(schema=sourceSchema)
self.sourceCentroidKey = afwTable.Point2DKey(
sourceSchema["slot_Centroid"])
self.sourceCat = afwTable.SourceCatalog(sourceSchema)
refSchema = afwTable.SourceTable.makeMinimalSchema()
self.refCoordKey = afwTable.CoordKey(refSchema["coord"])
self.refCat = afwTable.SourceCatalog(refSchema)
self.matchList = []
np.random.seed(5)
pixPointList = [
afwGeom.Point2D(pos)
for pos in np.random.random_sample([self.numMatches, 2]) *
self.bboxD.getDimensions() + self.bboxD.getMin()
]
for pixPoint in pixPointList:
src = self.sourceCat.addNew()
src.set(self.sourceCentroidKey, pixPoint)
ref = self.refCat.addNew()
ref.set(self.refCoordKey, self.wcs.pixelToSky(pixPoint))
match = afwTable.ReferenceMatch(ref, src, 0)
self.matchList.append(match)
def testSourceNotUsed(self):
""" Check that a source outside the bounding box is flagged as not used (False)."""
fluxName = self.name + "_flux"
apCorrFlagKey = self.schema.find("apcorr_" + self.name + "_used").key
sourceCat = self.makeCatalog()
source = sourceCat.addNew()
source_test_flux = 5.1
source_test_centroid = afwGeom.Point2D(15, 7.1)
fluxKey = self.schema.find(fluxName).key
centroidKey = afwTable.Point2DKey(self.schema["slot_Centroid"])
source.set(fluxKey, source_test_flux)
source.set(centroidKey, source_test_centroid)
self.meas_apCorr_task.run(catalog=sourceCat, exposure=self.exposure)
self.assertFalse(sourceCat[apCorrFlagKey][-1])
def checkResults(self, fitRes, catsUpdated):
"""Check results
@param[in] fitRes a object with two fields:
- wcs fit TAN-SIP WCS, an lsst.afw.geom.SkyWcs
- scatterOnSky median on-sky scatter, an lsst.afw.geom.Angle
@param[in] catsUpdated if True then coord field of self.sourceCat and centroid fields of self.refCat
have been updated
"""
self.assertLess(fitRes.scatterOnSky.asArcseconds(), 0.001)
tanSipWcs = fitRes.wcs
maxAngSep = 0 * lsst.geom.radians
maxPixSep = 0
refCoordKey = afwTable.CoordKey(self.refCat.schema["coord"])
if catsUpdated:
refCentroidKey = afwTable.Point2DKey(
self.refCat.schema["centroid"])
maxDistErr = 0 * lsst.geom.radians
for refObj, src, distRad in self.matches:
srcPixPos = src.get(self.srcCentroidKey)
refCoord = refObj.get(refCoordKey)
if catsUpdated:
refPixPos = refObj.get(refCentroidKey)
srcCoord = src.get(self.srcCoordKey)
else:
refPixPos = tanSipWcs.skyToPixel(refCoord)
srcCoord = tanSipWcs.pixelToSky(srcPixPos)
angSep = refCoord.separation(srcCoord)
dist = distRad * lsst.geom.radians
distErr = abs(dist - angSep)
maxDistErr = max(maxDistErr, distErr)
maxAngSep = max(maxAngSep, angSep)
pixSep = math.hypot(*(srcPixPos - refPixPos))
maxPixSep = max(maxPixSep, pixSep)
print("max angular separation = %0.4f arcsec" %
(maxAngSep.asArcseconds(), ))
print("max pixel separation = %0.3f" % (maxPixSep, ))
self.assertLess(maxAngSep.asArcseconds(), 0.001)
self.assertLess(maxPixSep, 0.005)
if catsUpdated:
allowedDistErr = 1e-7
else:
allowedDistErr = 0.001
self.assertLess(
maxDistErr.asArcseconds(), allowedDistErr,
"Computed distance in match list is off by %s arcsec" %
(maxDistErr.asArcseconds(), ))
def setUp(self):
crval = IcrsCoord(afwGeom.PointD(44., 45.))
crpix = afwGeom.PointD(0, 0)
arcsecPerPixel = 1 / 3600.0
CD11 = arcsecPerPixel
CD12 = 0
CD21 = 0
CD22 = arcsecPerPixel
self.tanWcs = makeWcs(crval, crpix, CD11, CD12, CD21, CD22)
S = 300
N = 5
if self.MatchClass == afwTable.ReferenceMatch:
refSchema = LoadReferenceObjectsTask.makeMinimalSchema(
filterNameList=["r"], addFluxSigma=True, addIsPhotometric=True)
self.refCat = afwTable.SimpleCatalog(refSchema)
elif self.MatchClass == afwTable.SourceMatch:
refSchema = afwTable.SourceTable.makeMinimalSchema()
self.refCat = afwTable.SourceCatalog(refSchema)
else:
raise RuntimeError("Unsupported MatchClass=%r" %
(self.MatchClass, ))
srcSchema = afwTable.SourceTable.makeMinimalSchema()
SingleFrameMeasurementTask(schema=srcSchema)
self.refCoordKey = afwTable.CoordKey(refSchema["coord"])
self.srcCoordKey = afwTable.CoordKey(srcSchema["coord"])
self.srcCentroidKey = afwTable.Point2DKey(srcSchema["slot_Centroid"])
self.sourceCat = afwTable.SourceCatalog(srcSchema)
self.origSourceCat = afwTable.SourceCatalog(
srcSchema) # undistorted copy
self.matches = []
for i in np.linspace(0., S, N):
for j in np.linspace(0., S, N):
src = self.sourceCat.addNew()
refObj = self.refCat.addNew()
src.set(self.srcCentroidKey, afwGeom.Point2D(i, j))
c = self.tanWcs.pixelToSky(afwGeom.Point2D(i, j))
refObj.setCoord(c)
self.matches.append(self.MatchClass(refObj, src, 0.0))
def loadData(self, rangePix=3000, numPoints=25):
"""Load catalogs and make the match list
This is a separate function so data can be reloaded if fitting more than once
(each time a WCS is fit it may update the source catalog, reference catalog and match list)
"""
if self.MatchClass == afwTable.ReferenceMatch:
refSchema = LoadReferenceObjectsTask.makeMinimalSchema(
filterNameList=["r"], addIsPhotometric=True, addCentroid=True)
self.refCat = afwTable.SimpleCatalog(refSchema)
elif self.MatchClass == afwTable.SourceMatch:
refSchema = afwTable.SourceTable.makeMinimalSchema()
self.refCat = afwTable.SourceCatalog(refSchema)
else:
raise RuntimeError("Unsupported MatchClass=%r" %
(self.MatchClass, ))
srcSchema = afwTable.SourceTable.makeMinimalSchema()
SingleFrameMeasurementTask(schema=srcSchema)
self.srcCoordKey = afwTable.CoordKey(srcSchema["coord"])
self.srcCentroidKey = afwTable.Point2DKey(srcSchema["slot_Centroid"])
self.srcCentroidKey_xErr = srcSchema["slot_Centroid_xErr"].asKey()
self.srcCentroidKey_yErr = srcSchema["slot_Centroid_yErr"].asKey()
self.sourceCat = afwTable.SourceCatalog(srcSchema)
self.matches = []
for i in np.linspace(0., rangePix, numPoints):
for j in np.linspace(0., rangePix, numPoints):
src = self.sourceCat.addNew()
refObj = self.refCat.addNew()
src.set(self.srcCentroidKey, lsst.geom.Point2D(i, j))
src.set(self.srcCentroidKey_xErr, 0.1)
src.set(self.srcCentroidKey_yErr, 0.1)
c = self.tanWcs.pixelToSky(i, j)
refObj.setCoord(c)
if False:
print(
"x,y = (%.1f, %.1f) pixels -- RA,Dec = (%.3f, %.3f) deg"
% (i, j, c.toFk5().getRa().asDegrees(),
c.toFk5().getDec().asDegrees()))
self.matches.append(self.MatchClass(refObj, src, 0.0))
def checkResults(self, fitRes, catsUpdated):
"""Check results.
"""
self.assertLess(fitRes.scatterOnSky.asArcseconds(), 0.001)
affineWcs = fitRes.wcs
maxAngSep = 0 * lsst.geom.radians
maxPixSep = 0
refCoordKey = afwTable.CoordKey(self.refCat.schema["coord"])
if catsUpdated:
refCentroidKey = afwTable.Point2DKey(
self.refCat.schema["centroid"])
maxDistErr = 0 * lsst.geom.radians
for refObj, src, distRad in self.matches:
srcPixPos = src.get(self.srcCentroidKey)
refCoord = refObj.get(refCoordKey)
if catsUpdated:
refPixPos = refObj.get(refCentroidKey)
srcCoord = src.get(self.srcCoordKey)
else:
refPixPos = affineWcs.skyToPixel(refCoord)
srcCoord = affineWcs.pixelToSky(srcPixPos)
angSep = refCoord.separation(srcCoord)
dist = distRad * lsst.geom.radians
distErr = abs(dist - angSep)
maxDistErr = max(maxDistErr, distErr)
maxAngSep = max(maxAngSep, angSep)
pixSep = math.hypot(*(srcPixPos - refPixPos))
maxPixSep = max(maxPixSep, pixSep)
print("max angular separation = %0.4f arcsec" %
(maxAngSep.asArcseconds(), ))
print("max pixel separation = %0.3f" % (maxPixSep, ))
self.assertLess(maxAngSep.asArcseconds(), 0.001)
self.assertLess(maxPixSep, 0.005)
if catsUpdated:
allowedDistErr = 1e-7
else:
allowedDistErr = 0.001
self.assertLess(
maxDistErr.asArcseconds(), allowedDistErr,
"Computed distance in match list is off by %s arcsec" %
(maxDistErr.asArcseconds(), ))
def setUp(self):
crval = afwGeom.SpherePoint(44, 45, afwGeom.degrees)
crpix = afwGeom.PointD(0, 0)
scale = 1 * afwGeom.arcseconds
self.tanWcs = afwGeom.makeSkyWcs(
crpix=crpix,
crval=crval,
cdMatrix=afwGeom.makeCdMatrix(scale=scale))
S = 300
N = 5
if self.MatchClass == afwTable.ReferenceMatch:
refSchema = LoadReferenceObjectsTask.makeMinimalSchema(
filterNameList=["r"], addFluxSigma=True, addIsPhotometric=True)
self.refCat = afwTable.SimpleCatalog(refSchema)
elif self.MatchClass == afwTable.SourceMatch:
refSchema = afwTable.SourceTable.makeMinimalSchema()
self.refCat = afwTable.SourceCatalog(refSchema)
else:
raise RuntimeError("Unsupported MatchClass=%r" %
(self.MatchClass, ))
srcSchema = afwTable.SourceTable.makeMinimalSchema()
SingleFrameMeasurementTask(schema=srcSchema)
self.refCoordKey = afwTable.CoordKey(refSchema["coord"])
self.srcCoordKey = afwTable.CoordKey(srcSchema["coord"])
self.srcCentroidKey = afwTable.Point2DKey(srcSchema["slot_Centroid"])
self.sourceCat = afwTable.SourceCatalog(srcSchema)
self.origSourceCat = afwTable.SourceCatalog(
srcSchema) # undistorted copy
self.matches = []
for i in np.linspace(0., S, N):
for j in np.linspace(0., S, N):
src = self.sourceCat.addNew()
refObj = self.refCat.addNew()
src.set(self.srcCentroidKey, afwGeom.Point2D(i, j))
c = self.tanWcs.pixelToSky(afwGeom.Point2D(i, j))
refObj.setCoord(c)
self.matches.append(self.MatchClass(refObj, src, 0.0))
def _trimToBBox(refCat, bbox, wcs):
"""!Remove objects outside a given pixel-based bbox and set centroid and hasCentroid fields
@param[in,out] refCat a catalog of objects (an lsst.afw.table.SimpleCatalog,
or other table type that has fields "coord", "centroid" and "hasCentroid").
The "coord" field is read.
The "centroid" and "hasCentroid" fields are set.
@param[in] bbox pixel region (an afwImage.Box2D)
@param[in] wcs WCS used to convert sky position to pixel position (an lsst.afw.math.WCS)
@return a catalog of reference objects in bbox, with centroid and hasCentroid fields set
"""
afwTable.updateRefCentroids(wcs, refCat)
centroidKey = afwTable.Point2DKey(refCat.schema["centroid"])
retStarCat = type(refCat)(refCat.table)
for star in refCat:
point = star.get(centroidKey)
if bbox.contains(point):
retStarCat.append(star)
return retStarCat
def _trimToBBox(refCat, bbox, wcs):
"""!Remove objects outside a given pixel-based bbox and set centroid and hasCentroid fields
@param[in] refCat a catalog of objects (an lsst.afw.table.SimpleCatalog,
or other table type that supports getCoord() on records)
@param[in] bbox pixel region (an afwImage.Box2D)
@param[in] wcs WCS used to convert sky position to pixel position (an lsst.afw.math.WCS)
@return a catalog of reference objects in bbox, with centroid and hasCentroid fields set
"""
centroidKey = afwTable.Point2DKey(refCat.schema["centroid"])
hasCentroidKey = refCat.schema["hasCentroid"].asKey()
retStarCat = type(refCat)(refCat.table)
for star in refCat:
point = wcs.skyToPixel(star.getCoord())
if bbox.contains(point):
star.set(centroidKey, point)
star.set(hasCentroidKey, True)
retStarCat.append(star)
return retStarCat
def testRejectBlends(self):
"""Test the PcaPsfDeterminerTask blend removal."""
"""
We give it a single blended source, asking it to remove blends,
and check that it barfs in the expected way.
"""
psfDeterminerClass = measAlg.psfDeterminerRegistry["pca"]
config = psfDeterminerClass.ConfigClass()
config.doRejectBlends = True
psfDeterminer = psfDeterminerClass(config=config)
schema = afwTable.SourceTable.makeMinimalSchema()
# Use The single frame measurement task to populate the schema with standard keys
measBase.SingleFrameMeasurementTask(schema)
catalog = afwTable.SourceCatalog(schema)
source = catalog.addNew()
# Make the source blended, with necessary information to calculate pca
spanShift = afwGeom.Point2I(54, 123)
spans = afwGeom.SpanSet.fromShape(6, offset=spanShift)
foot = afwDetection.Footprint(spans, self.exposure.getBBox())
foot.addPeak(45, 123, 6)
foot.addPeak(47, 126, 5)
source.setFootprint(foot)
centerKey = afwTable.Point2DKey(source.schema['slot_Centroid'])
shapeKey = afwTable.QuadrupoleKey(schema['slot_Shape'])
source.set(centerKey, afwGeom.Point2D(46, 124))
source.set(shapeKey, afwGeom.Quadrupole(1.1, 2.2, 1))
candidates = [measAlg.makePsfCandidate(source, self.exposure)]
metadata = dafBase.PropertyList()
with self.assertRaises(RuntimeError) as cm:
psfDeterminer.determinePsf(self.exposure, candidates, metadata)
self.assertEqual(str(cm.exception),
"All PSF candidates removed as blends")
def approximateWcs(wcs,
bbox,
order=3,
nx=20,
ny=20,
iterations=3,
skyTolerance=0.001 * afwGeom.arcseconds,
pixelTolerance=0.02,
useTanWcs=False):
"""Approximate an existing WCS as a TAN-SIP WCS
The fit is performed by evaluating the WCS at a uniform grid of points within a bounding box.
@param[in] wcs wcs to approximate
@param[in] bbox the region over which the WCS will be fit
@param[in] order order of SIP fit
@param[in] nx number of grid points along x
@param[in] ny number of grid points along y
@param[in] iterations number of times to iterate over fitting
@param[in] skyTolerance maximum allowed difference in world coordinates between
input wcs and approximate wcs (default is 0.001 arcsec)
@param[in] pixelTolerance maximum allowed difference in pixel coordinates between
input wcs and approximate wcs (default is 0.02 pixels)
@param[in] useTanWcs send a TAN version of wcs to the fitter? It is documented to require that,
but I don't think the fitter actually cares
@return the fit TAN-SIP WCS
"""
if useTanWcs:
crCoord = wcs.getSkyOrigin()
crPix = wcs.getPixelOrigin()
cdMat = wcs.getCDMatrix()
tanWcs = afwImage.makeWcs(crCoord, crPix, cdMat[0, 0], cdMat[0, 1],
cdMat[1, 0], cdMat[1, 1])
else:
tanWcs = wcs
# create a matchList consisting of a grid of points covering the bbox
refSchema = afwTable.SimpleTable.makeMinimalSchema()
refCoordKey = afwTable.CoordKey(refSchema["coord"])
refCat = afwTable.SimpleCatalog(refSchema)
sourceSchema = afwTable.SourceTable.makeMinimalSchema()
SingleFrameMeasurementTask(schema=sourceSchema) # expand the schema
sourceCentroidKey = afwTable.Point2DKey(sourceSchema["slot_Centroid"])
sourceCat = afwTable.SourceCatalog(sourceSchema)
matchList = []
bboxd = afwGeom.Box2D(bbox)
for x in np.linspace(bboxd.getMinX(), bboxd.getMaxX(), nx):
for y in np.linspace(bboxd.getMinY(), bboxd.getMaxY(), ny):
pixelPos = afwGeom.Point2D(x, y)
skyCoord = wcs.pixelToSky(pixelPos)
refObj = refCat.addNew()
refObj.set(refCoordKey, skyCoord)
source = sourceCat.addNew()
source.set(sourceCentroidKey, pixelPos)
matchList.append(afwTable.ReferenceMatch(refObj, source, 0.0))
# The TAN-SIP fitter is fitting x and y separately, so we have to iterate to make it converge
for indx in range(iterations):
sipObject = makeCreateWcsWithSip(matchList, tanWcs, order, bbox)
tanWcs = sipObject.getNewWcs()
fitWcs = sipObject.getNewWcs()
mockTest = _MockTestCase()
assertWcsAlmostEqualOverBBox(mockTest,
wcs,
fitWcs,
bbox,
maxDiffSky=skyTolerance,
maxDiffPix=pixelTolerance)
return fitWcs
def approximateWcs(wcs,
camera_wrapper=None,
detector_name=None,
obs_metadata=None,
order=3,
nx=20,
ny=20,
iterations=3,
skyTolerance=0.001 * afwGeom.arcseconds,
pixelTolerance=0.02):
"""Approximate an existing WCS as a TAN-SIP WCS
The fit is performed by evaluating the WCS at a uniform grid of points within a bounding box.
@param[in] wcs wcs to approximate
@param[in] camera_wrapper is an instantiation of GalSimCameraWrapper
@param[in] detector_name is the name of the detector
@param[in] obs_metadata is an ObservationMetaData characterizing the telescope pointing
@param[in] order order of SIP fit
@param[in] nx number of grid points along x
@param[in] ny number of grid points along y
@param[in] iterations number of times to iterate over fitting
@param[in] skyTolerance maximum allowed difference in world coordinates between
input wcs and approximate wcs (default is 0.001 arcsec)
@param[in] pixelTolerance maximum allowed difference in pixel coordinates between
input wcs and approximate wcs (default is 0.02 pixels)
@return the fit TAN-SIP WCS
"""
tanWcs = wcs
# create a matchList consisting of a grid of points covering the bbox
refSchema = afwTable.SimpleTable.makeMinimalSchema()
refCoordKey = afwTable.CoordKey(refSchema["coord"])
refCat = afwTable.SimpleCatalog(refSchema)
sourceSchema = afwTable.SourceTable.makeMinimalSchema()
SingleFrameMeasurementTask(schema=sourceSchema) # expand the schema
sourceCentroidKey = afwTable.Point2DKey(sourceSchema["slot_Centroid"])
sourceCat = afwTable.SourceCatalog(sourceSchema)
# 20 March 2017
# the 'try' block is how it works in swig;
# the 'except' block is how it works in pybind11
try:
matchList = afwTable.ReferenceMatchVector()
except AttributeError:
matchList = []
bbox = camera_wrapper.getBBox(detector_name)
bboxd = afwGeom.Box2D(bbox)
for x in np.linspace(bboxd.getMinX(), bboxd.getMaxX(), nx):
for y in np.linspace(bboxd.getMinY(), bboxd.getMaxY(), ny):
pixelPos = afwGeom.Point2D(x, y)
ra, dec = camera_wrapper.raDecFromPixelCoords(
np.array([x]),
np.array([y]),
detector_name,
obs_metadata=obs_metadata,
epoch=2000.0,
includeDistortion=True)
skyCoord = afwGeom.SpherePoint(ra[0], dec[0], LsstGeom.degrees)
refObj = refCat.addNew()
refObj.set(refCoordKey, skyCoord)
source = sourceCat.addNew()
source.set(sourceCentroidKey, pixelPos)
matchList.append(afwTable.ReferenceMatch(refObj, source, 0.0))
# The TAN-SIP fitter is fitting x and y separately, so we have to iterate to make it converge
for indx in range(iterations):
sipObject = makeCreateWcsWithSip(matchList, tanWcs, order, bbox)
tanWcs = sipObject.getNewWcs()
fitWcs = sipObject.getNewWcs()
return fitWcs
def approximateWcs(wcs,
bbox,
camera=None,
detector=None,
obs_metadata=None,
order=3,
nx=20,
ny=20,
iterations=3,
skyTolerance=0.001 * afwGeom.arcseconds,
pixelTolerance=0.02,
useTanWcs=False):
"""Approximate an existing WCS as a TAN-SIP WCS
The fit is performed by evaluating the WCS at a uniform grid of points within a bounding box.
@param[in] wcs wcs to approximate
@param[in] bbox the region over which the WCS will be fit
@param[in] camera is an instantiation of afw.cameraGeom.camera
@param[in] detector is a detector from camera
@param[in] obs_metadata is an ObservationMetaData characterizing the telescope pointing
@param[in] order order of SIP fit
@param[in] nx number of grid points along x
@param[in] ny number of grid points along y
@param[in] iterations number of times to iterate over fitting
@param[in] skyTolerance maximum allowed difference in world coordinates between
input wcs and approximate wcs (default is 0.001 arcsec)
@param[in] pixelTolerance maximum allowed difference in pixel coordinates between
input wcs and approximate wcs (default is 0.02 pixels)
@param[in] useTanWcs send a TAN version of wcs to the fitter? It is documented to require that,
but I don't think the fitter actually cares
@return the fit TAN-SIP WCS
"""
if useTanWcs:
crCoord = wcs.getSkyOrigin()
crPix = wcs.getPixelOrigin()
cdMat = wcs.getCDMatrix()
tanWcs = afwImage.makeWcs(crCoord, crPix, cdMat[0, 0], cdMat[0, 1],
cdMat[1, 0], cdMat[1, 1])
else:
tanWcs = wcs
# create a matchList consisting of a grid of points covering the bbox
refSchema = afwTable.SimpleTable.makeMinimalSchema()
refCoordKey = afwTable.CoordKey(refSchema["coord"])
refCat = afwTable.SimpleCatalog(refSchema)
sourceSchema = afwTable.SourceTable.makeMinimalSchema()
SingleFrameMeasurementTask(schema=sourceSchema) # expand the schema
sourceCentroidKey = afwTable.Point2DKey(sourceSchema["slot_Centroid"])
sourceCat = afwTable.SourceCatalog(sourceSchema)
# 20 March 2017
# the 'try' block is how it works in swig;
# the 'except' block is how it works in pybind11
try:
matchList = afwTable.ReferenceMatchVector()
except AttributeError:
matchList = []
bboxd = afwGeom.Box2D(bbox)
for x in np.linspace(bboxd.getMinX(), bboxd.getMaxX(), nx):
for y in np.linspace(bboxd.getMinY(), bboxd.getMaxY(), ny):
pixelPos = afwGeom.Point2D(x, y)
ra, dec = raDecFromPixelCoords(np.array([x]),
np.array([y]), [detector.getName()],
camera=camera,
obs_metadata=obs_metadata,
epoch=2000.0,
includeDistortion=True)
skyCoord = afwCoord.Coord(afwGeom.Point2D(ra[0], dec[0]))
refObj = refCat.addNew()
refObj.set(refCoordKey, skyCoord)
source = sourceCat.addNew()
source.set(sourceCentroidKey, pixelPos)
matchList.append(afwTable.ReferenceMatch(refObj, source, 0.0))
# The TAN-SIP fitter is fitting x and y separately, so we have to iterate to make it converge
for indx in range(iterations):
sipObject = makeCreateWcsWithSip(matchList, tanWcs, order, bbox)
tanWcs = sipObject.getNewWcs()
fitWcs = sipObject.getNewWcs()
return fitWcs
def singleTestInstance(self, filename, distortFunc, doPlot=False):
sourceCat = self.loadSourceCatalog(self.filename)
refCat = self.computePosRefCatalog(sourceCat)
distortedCat = distort.distortList(sourceCat, distortFunc)
if doPlot:
import matplotlib.pyplot as plt
undistorted = [
self.wcs.skyToPixel(
self.distortedWcs.pixelToSky(ss.getCentroid()))
for ss in distortedCat
]
refs = [self.wcs.skyToPixel(ss.getCoord()) for ss in refCat]
def plot(catalog, symbol):
plt.plot([ss.getX() for ss in catalog],
[ss.getY() for ss in catalog], symbol)
plot(distortedCat, 'b+') # Distorted positions: blue +
plot(undistorted, 'g+') # Undistorted positions: green +
plot(refs, 'rx') # Reference catalog: red x
# The green + should overlap with the red x, because that's how
# MatchPessimisticB does it.
plt.show()
sourceCat = distortedCat
matchRes = self.MatchPessimisticB.matchObjectsToSources(
refCat=refCat,
sourceCat=sourceCat,
wcs=self.distortedWcs,
refFluxField="r_flux",
)
matches = matchRes.matches
if doPlot:
measAstrom.plotAstrometry(matches=matches,
refCat=refCat,
sourceCat=sourceCat)
self.assertEqual(len(matches), 183)
refCoordKey = afwTable.CoordKey(refCat.schema["coord"])
srcCoordKey = afwTable.CoordKey(sourceCat.schema["coord"])
refCentroidKey = afwTable.Point2DKey(refCat.getSchema()["centroid"])
maxDistErr = afwGeom.Angle(0)
for refObj, source, distRad in matches:
sourceCoord = source.get(srcCoordKey)
refCoord = refObj.get(refCoordKey)
predDist = sourceCoord.angularSeparation(refCoord)
distErr = abs(predDist - distRad * afwGeom.radians)
maxDistErr = max(distErr, maxDistErr)
if refObj.getId() != source.getId():
refCentroid = refObj.get(refCentroidKey)
sourceCentroid = source.getCentroid()
radius = math.hypot(*(refCentroid - sourceCentroid))
self.fail(
"ID mismatch: %s at %s != %s at %s; error = %0.1f pix" %
(refObj.getId(), refCentroid, source.getId(),
sourceCentroid, radius))
self.assertLess(maxDistErr.asArcseconds(), 1e-7)
def singleTestInstance(self, filename, distortFunc, doPlot=False):
sourceCat = self.loadSourceCatalog(self.filename)
refCat = self.computePosRefCatalog(sourceCat)
# Apply source selector to sourceCat, using the astrometry config defaults
tempConfig = measAstrom.AstrometryTask.ConfigClass()
tempConfig.matcher.retarget(measAstrom.MatchOptimisticBTask)
tempConfig.sourceSelector["matcher"].excludePixelFlags = False
tempSolver = measAstrom.AstrometryTask(config=tempConfig,
refObjLoader=None)
sourceSelection = tempSolver.sourceSelector.run(sourceCat)
distortedCat = distort.distortList(sourceSelection.sourceCat,
distortFunc)
if doPlot:
import matplotlib.pyplot as plt
undistorted = [
self.wcs.skyToPixel(
self.distortedWcs.pixelToSky(ss.getCentroid()))
for ss in distortedCat
]
refs = [self.wcs.skyToPixel(ss.getCoord()) for ss in refCat]
def plot(catalog, symbol):
plt.plot([ss.getX() for ss in catalog],
[ss.getY() for ss in catalog], symbol)
# plot(sourceCat, 'k+') # Original positions: black +
plot(distortedCat, 'b+') # Distorted positions: blue +
plot(undistorted, 'g+') # Undistorted positions: green +
plot(refs, 'rx') # Reference catalog: red x
# The green + should overlap with the red x, because that's how matchOptimisticB does it.
# The black + happens to overlap with those also, but that's beside the point.
plt.show()
sourceCat = distortedCat
matchRes = self.matchOptimisticB.matchObjectsToSources(
refCat=refCat,
sourceCat=sourceCat,
wcs=self.distortedWcs,
sourceFluxField='slot_ApFlux_instFlux',
refFluxField="r_flux",
)
matches = matchRes.matches
if doPlot:
measAstrom.plotAstrometry(matches=matches,
refCat=refCat,
sourceCat=sourceCat)
self.assertEqual(len(matches), 183)
refCoordKey = afwTable.CoordKey(refCat.schema["coord"])
srcCoordKey = afwTable.CoordKey(sourceCat.schema["coord"])
refCentroidKey = afwTable.Point2DKey(refCat.getSchema()["centroid"])
maxDistErr = 0 * lsst.geom.radians
for refObj, source, distRad in matches:
sourceCoord = source.get(srcCoordKey)
refCoord = refObj.get(refCoordKey)
predDist = sourceCoord.separation(refCoord)
distErr = abs(predDist - distRad * lsst.geom.radians)
maxDistErr = max(distErr, maxDistErr)
if refObj.getId() != source.getId():
refCentroid = refObj.get(refCentroidKey)
sourceCentroid = source.getCentroid()
radius = math.hypot(*(refCentroid - sourceCentroid))
self.fail(
"ID mismatch: %s at %s != %s at %s; error = %0.1f pix" %
(refObj.getId(), refCentroid, source.getId(),
sourceCentroid, radius))
self.assertLess(maxDistErr.asArcseconds(), 1e-7)
