def test_integral_intested_points():
np.random.seed(22)
f = np.random.rand(16, 16) * 230
f = f.astype(np.uint8)
f = surf.integral(f)
with pytest.raises(TypeError):
surf.interest_points(f.astype(np.int32), is_integral=True)
def test_integral_descriptors():
np.random.seed(22)
f = np.random.rand(16, 16) * 230
f = f.astype(np.uint8)
f = surf.integral(f)
points = surf.interest_points(f, is_integral=True)
surf.descriptors(f.astype(np.int32), points, is_integral=True)
def test_integral_descriptors():
np.random.seed(22)
f = np.random.rand(16,16)*230
f = f.astype(np.uint8)
f = surf.integral(f)
points = surf.interest_points(f, is_integral=True)
surf.descriptors(f.astype(np.int32), points, is_integral=True)
def test_descriptors_descriptor_only():
np.random.seed(22)
f = np.random.rand(256, 256) * 230
f = f.astype(np.uint8)
points = surf.interest_points(f, 6, 24, 1)
full = surf.descriptors(f, points)
only = surf.descriptors(f, points, descriptor_only=True)
assert full.size > only.size
def test_descriptors_descriptor_only():
np.random.seed(22)
f = np.random.rand(256,256)*230
f = f.astype(np.uint8)
points = surf.interest_points(f, 6, 24, 1)
full = surf.descriptors(f, points)
only = surf.descriptors(f, points, descriptor_only=True)
assert full.size > only.size
def surf_ref(f, ref):
fi = surf.integral(f.copy())
points = surf.interest_points(fi, 6, 24, 1, max_points=1024, is_integral=True)
descs = surf.descriptors(fi, points, is_integral=True, descriptor_only=True)
if ref is None:
return descs
ri = surf.integral(ref.copy())
descsref = surf.descriptors(ri, points, is_integral=True, descriptor_only=True)
return np.hstack( (descs, descsref) )
def surfref(im):
from mahotas.features import surf
import numpy as np
spoints = surf.interest_points(im.get('protein'), max_points=1024)
return np.hstack([
surf.descriptors(im.get('protein'), spoints, descriptor_only=True),
surf.descriptors(im.get('dna'), spoints, descriptor_only=True),
surf.descriptors(im.get('er'), spoints, descriptor_only=True),
surf.descriptors(im.get('tubulin'), spoints, descriptor_only=True),
])
def test_interest_points_descriptors():
np.random.seed(22)
f = np.random.rand(256, 256) * 230
f = f.astype(np.uint8)
fi = surf.integral(f)
spoints = surf.surf(f, 6, 24, 1)
for arr, is_integral in zip([f, fi], [False, True]):
points = surf.interest_points(arr, 6, 24, 1, is_integral=is_integral)
points = list(points)
points.sort(key=(lambda p: -p[3]))
points = np.array(points, dtype=np.float64)
descs = surf.descriptors(arr, points, is_integral)
assert np.all(descs[:len(spoints)] == spoints)
def test_interest_points_descriptors():
np.random.seed(22)
f = np.random.rand(256,256)*230
f = f.astype(np.uint8)
fi = surf.integral(f)
spoints = surf.surf(f, 6, 24, 1)
for arr, is_integral in zip([f,fi], [False, True]):
points = surf.interest_points(arr, 6, 24, 1, is_integral=is_integral)
points = list(points)
points.sort(key=(lambda p: -p[3]))
points = np.array(points, dtype=np.float64)
descs = surf.descriptors(arr, points, is_integral)
assert np.all(descs[:len(spoints)] == spoints)
def test_integral_intested_points():
np.random.seed(22)
f = np.random.rand(16, 16) * 230
f = f.astype(np.uint8)
f = surf.integral(f)
surf.interest_points(f.astype(np.int32), is_integral=True)
def test_integral_intested_points():
np.random.seed(22)
f = np.random.rand(16,16)*230
f = f.astype(np.uint8)
f = surf.integral(f)
surf.interest_points(f.astype(np.int32), is_integral=True)
def surf(im):
from mahotas.features import surf
import numpy as np
spoints = surf.interest_points(im.get('protein'), max_points=1024)
return surf.descriptors(im.get('protein'), spoints, descriptor_only=True)
import cv2
import numpy as np
from mahotas.features import surf
import milk
img = cv2.imread('img_07473.jpg')
gray= cv2.cvtColor(img,cv2.COLOR_BGR2GRAY)
#img = cv2.imread('fly.png',0)
# Create SURF object. You can specify params here or later.
# Here I set Hessian Threshold to 400
#surf = cv2.SURF(400)
#surf = surf.surf(400)
# Find keypoints and descriptors directly
#kp, des = surf.detectAndCompute(img,None)
des = surf.surf(gray)
kp = surf.interest_points(gray, threshold=10)
print(len(kp))
#img2 = cv2.drawKeypoints(img,kp,None,(255,0,0),4)
f2 = surf.show_surf(img, kp[:100], )
cv2.imwrite('surf_keypoints.jpg',img2)
