def setup():
global sa
indexname = "./gludna"
sa = SuffixArray.from_indexname(indexname)
sa.bwt_from_indexname(indexname)
sa.occ_from_indexname(indexname)
sa.pos_from_indexname(indexname)
sa.seq_from_indexname(indexname)
def main(indexname, num=1000, length=200):
sa = SuffixArray.from_indexname(indexname)
sa.bwt_from_indexname(indexname)
sa.occ_from_indexname(indexname)
for i in range(num):
print("PATTERN",i)
pat, opt = random_pattern(length)
run_ms(sa, pat, opt)
pass