def register_gui(form: 'QFormLayout', on_change: Callable,
view) -> Dict[str, Any]:
# Create a spin box for kernel size without add_property_to_form in order to allow a custom validate method
size_field = KernelSpinBox(on_change)
size_field_label = QLabel("Kernel Size")
size_field_label.setToolTip(KERNEL_SIZE_TOOLTIP)
form.addRow(size_field_label, size_field)
_, mode_field = add_property_to_form(
'Edge Mode',
Type.CHOICE,
valid_values=modes(),
form=form,
on_change=on_change,
tooltip="Mode to handle the edges of the image")
_, gpu_field = add_property_to_form(
'Use GPU',
Type.BOOL,
default_value=False,
tooltip='Run the median filter on the GPU',
form=form,
on_change=on_change)
return {
'size_field': size_field,
'mode_field': mode_field,
'use_gpu_field': gpu_field
}
def register_gui(form: 'QFormLayout', on_change: Callable,
view) -> Dict[str, Any]:
_, size_field = add_property_to_form(
'Kernel Size',
Type.INT,
3, (0, 1000),
form=form,
on_change=on_change,
tooltip="Size of the median filter kernel")
_, mode_field = add_property_to_form(
'Mode',
Type.CHOICE,
valid_values=modes(),
form=form,
on_change=on_change,
tooltip="Mode to handle the edges of the image")
_, gpu_field = add_property_to_form(
'Use GPU',
Type.BOOL,
default_value=False,
tooltip='Run the median filter on the GPU',
form=form,
on_change=on_change)
return {
'size_field': size_field,
'mode_field': mode_field,
'use_gpu_field': gpu_field
}
def register_gui(form, on_change, view):
_, size_field = add_property_to_form(
'Kernel Size',
Type.INT,
3, (0, 1000),
form=form,
on_change=on_change,
tooltip="Size of the median filter kernel")
_, order_field = add_property_to_form(
'Order',
Type.INT,
0, (0, 3),
form=form,
on_change=on_change,
tooltip="Order of the Gaussian filter")
_, mode_field = add_property_to_form(
'Mode',
Type.CHOICE,
valid_values=modes(),
form=form,
on_change=on_change,
tooltip="Mode to handle the edges of the image")
return {
'size_field': size_field,
'order_field': order_field,
'mode_field': mode_field
}
def register_gui(form, on_change, view):
# Rebin by uniform factor options
_, factor = add_property_to_form('Factor',
'float',
0.5, (0.01, 4.0),
on_change=on_change,
tooltip="Factor by which the data will be rebinned, "
"e.g. 0.5 is 50% reduced size",
single_step_size=0.05)
# Rebin to target shape options
shape_range = (1, 9999)
_, shape_x = add_property_to_form('X', Type.INT, 100, shape_range, on_change=on_change)
_, shape_y = add_property_to_form('Y', Type.INT, 100, shape_range, on_change=on_change)
from PyQt5.QtWidgets import QHBoxLayout, QRadioButton, QLabel, QComboBox
shape_fields = QHBoxLayout()
shape_fields.addWidget(shape_x)
shape_fields.addWidget(shape_y)
# Rebin dimension selection options
rebin_by_factor_radio = QRadioButton("Rebin by Factor")
def size_by_factor_toggled(enabled):
factor.setEnabled(enabled)
on_change()
rebin_by_factor_radio.toggled.connect(size_by_factor_toggled)
rebin_to_dimensions_radio = QRadioButton("Rebin to Dimensions")
def size_by_dimensions_toggled(enabled):
shape_x.setEnabled(enabled)
shape_y.setEnabled(enabled)
on_change()
rebin_to_dimensions_radio.toggled.connect(size_by_dimensions_toggled)
# Rebin mode options
label_mode = QLabel("Mode")
mode_field = QComboBox()
mode_field.addItems(modes())
form.addRow(rebin_to_dimensions_radio, shape_fields)
form.addRow(rebin_by_factor_radio, factor)
form.addRow(label_mode, mode_field)
# Ensure good default UI state
rebin_to_dimensions_radio.setChecked(True)
rebin_by_factor_radio.setChecked(True)
return {
"rebin_to_dimensions_radio": rebin_to_dimensions_radio,
"shape_x": shape_x,
"shape_y": shape_y,
"rebin_by_factor_radio": rebin_by_factor_radio,
"factor": factor,
"mode_field": mode_field,
}
def register_gui(form, on_change, view: FiltersWindowView) -> Dict[str, Any]:
from mantidimaging.gui.utility import add_property_to_form
def try_to_select_relevant_stack(name: str, widget: StackSelectorWidgetView) -> None:
for i in range(widget.count()):
if name.lower() in widget.itemText(i).lower():
widget.setCurrentIndex(i)
break
_, flat_widget = add_property_to_form("Flat", Type.STACK, form=form, filters_view=view, on_change=on_change)
_, dark_widget = add_property_to_form("Dark", Type.STACK, form=form, filters_view=view, on_change=on_change)
assert isinstance(flat_widget, StackSelectorWidgetView)
flat_widget.setMaximumWidth(250)
flat_widget.subscribe_to_main_window(view.main_window)
try_to_select_relevant_stack("Flat", flat_widget)
assert isinstance(dark_widget, StackSelectorWidgetView)
dark_widget.setMaximumWidth(250)
dark_widget.subscribe_to_main_window(view.main_window)
try_to_select_relevant_stack("Dark", dark_widget)
return {
'flat_widget': flat_widget,
'dark_widget': dark_widget,
}
def register_gui(form, on_change, view):
from mantidimaging.gui.utility import add_property_to_form
label, _ = add_property_to_form("This filter requires sinograms\nto produce a sensible result.",
Type.LABEL,
form=form,
on_change=on_change)
# defaults taken from TomoPy integration
# https://tomopy.readthedocs.io/en/latest/api/tomopy.prep.stripe.html#tomopy.prep.stripe.remove_all_stripe
_, snr = add_property_to_form('Stripe ratio',
Type.FLOAT,
default_value=3,
form=form,
on_change=on_change,
tooltip="Ratio used to segment between useful information and noise"
". Greater is less sensitive.")
_, la_size = add_property_to_form('Large stripe kernel',
Type.INT,
default_value=61,
valid_values=(1, 100),
form=form,
on_change=on_change,
tooltip="Window size of the median filter to remove large stripes.")
return {'snr': snr, 'la_size': la_size}
def register_gui(form, on_change, view):
_, diff_field = add_property_to_form('Difference',
'float',
1000,
valid_values=(1e-7, 10000),
form=form,
on_change=on_change,
tooltip="Difference between pixels that will be used to spot outliers.\n"
"It is calculated by subtracting the original image "
"from the median filtered image")
diff_field.setDecimals(7)
_, size_field = add_property_to_form('Median kernel',
Type.INT,
3, (1, 1000),
form=form,
on_change=on_change,
tooltip="The size of the median filter kernel used to find outliers.")
_, mode_field = add_property_to_form('Mode',
Type.CHOICE,
valid_values=modes(),
form=form,
on_change=on_change,
tooltip="Whether to remove bright or dark outliers")
return {'diff_field': diff_field, 'size_field': size_field, 'mode_field': mode_field}
def register_gui(form, on_change, view):
_, diff_field = add_property_to_form('Difference',
'float',
1,
valid_values=(-1000000, 1000000),
form=form,
on_change=on_change)
diff_field.setDecimals(7)
_, size_field = add_property_to_form('Size',
Type.INT,
3, (0, 1000),
form=form,
on_change=on_change)
_, apply_to_field = add_property_to_form('Apply to',
Type.CHOICE,
valid_values=("Projections",
"Sinograms"),
form=form,
on_change=on_change)
return {
'diff_field': diff_field,
'size_field': size_field,
'apply_to_field': apply_to_field
}
def register_gui(form: 'QFormLayout', on_change: Callable,
view: 'BaseMainWindowView') -> Dict[str, 'QWidget']:
from mantidimaging.gui.utility import add_property_to_form
value_range = (-10000000, 10000000)
_, mode_field = add_property_to_form(
'Replace with',
Type.CHOICE,
valid_values=NaNRemovalFilter.MODES,
form=form,
on_change=on_change,
tooltip="Values used to replace NaNs")
_, replace_value_field = add_property_to_form(
"Replacement Value",
'float',
valid_values=value_range,
form=form,
on_change=on_change,
tooltip="The value to replace the NaNs with")
replace_value_field.setDecimals(7)
mode_field.currentTextChanged.connect(
lambda text: enable_correct_fields_only(mode_field,
replace_value_field))
return {
"mode_field": mode_field,
"replace_value_field": replace_value_field
}
def register_gui(form, on_change, view):
from mantidimaging.gui.utility import add_property_to_form
label, _ = add_property_to_form(
"This filter requires sinograms\nto produce a sensible result.",
Type.LABEL,
form=form,
on_change=on_change)
_, order = add_property_to_form(
'Polynomial fit order',
Type.INT,
default_value=1,
form=form,
on_change=on_change,
tooltip="Polynomial fit order. Check sarepy for more information")
_, sigmax = add_property_to_form(
'Sigma X',
Type.INT,
default_value=3,
form=form,
on_change=on_change,
tooltip="Sigma of the Gaussian window in the x-direction")
_, sigmay = add_property_to_form(
'Sigma Y',
Type.INT,
default_value=3,
form=form,
on_change=on_change,
tooltip="Sigma of the Gaussian window in the y-direction")
return {'order': order, 'sigmax': sigmax, 'sigmay': sigmay}
def register_gui(form, on_change, view):
_, size_field = add_property_to_form('Kernel Size', Type.INT, 3, (0, 1000), form=form, on_change=on_change)
_, order_field = add_property_to_form('Order', Type.INT, 0, (0, 3), form=form, on_change=on_change)
_, mode_field = add_property_to_form('Mode', Type.CHOICE, valid_values=modes(), form=form, on_change=on_change)
return {'size_field': size_field, 'order_field': order_field, 'mode_field': mode_field}
def register_gui(form, on_change, view):
from mantidimaging.gui.utility import add_property_to_form
value_range = (-10000000, 10000000)
_, clip_min_field = add_property_to_form('Clip Min',
'float',
valid_values=value_range,
form=form,
on_change=on_change)
clip_min_field.setDecimals(7)
_, clip_max_field = add_property_to_form('Clip Max',
'float',
valid_values=value_range,
form=form,
on_change=on_change)
clip_max_field.setDecimals(7)
_, clip_min_new_value_field = add_property_to_form(
'Min Replacement Value',
'float',
valid_values=value_range,
form=form,
on_change=on_change,
tooltip='The value that will be used to replace pixel values '
'that fall below Clip Min.')
_, clip_max_new_value_field = add_property_to_form(
'Max Replacement Value',
'float',
valid_values=value_range,
form=form,
on_change=on_change,
tooltip='The value that will be used to replace pixel values '
'that are above Clip Max.')
clip_min_new_value_field.setDecimals(7)
clip_max_new_value_field.setDecimals(7)
# Ensures that the new_value fields are set to be clip_min
# or clip_max, unless the user has explicitly changed them
def update_field_on_value_changed(field, field_new_value):
field_new_value.setValue(field.value())
# using lambda we can pass in parameters
clip_min_field.valueChanged.connect(
lambda: update_field_on_value_changed(clip_min_field, clip_min_new_value_field))
clip_max_field.valueChanged.connect(
lambda: update_field_on_value_changed(clip_max_field, clip_max_new_value_field))
return {
"clip_min_field": clip_min_field,
"clip_max_field": clip_max_field,
"clip_min_new_value_field": clip_min_new_value_field,
"clip_max_new_value_field": clip_max_new_value_field
}
def register_gui(form, on_change, view):
from mantidimaging.gui.utility import add_property_to_form
label, _ = add_property_to_form(
"This filter requires sinograms\nto produce a sensible result.",
Type.LABEL,
form=form,
on_change=on_change)
_, sigma = add_property_to_form(
'Sigma',
Type.INT,
default_value=3,
form=form,
on_change=on_change,
tooltip=
"Sigma of the Gaussian window used to separate the low-pass and"
" high-pass components of the intensity profile of each column.")
_, size = add_property_to_form(
'Stripe kernel',
Type.INT,
default_value=21,
form=form,
on_change=on_change,
tooltip="Window size of the median filter to remove large stripes."
)
_, window_dim = add_property_to_form(
'Dimension of the window',
Type.INT,
default_value=1,
valid_values=(1, 2),
form=form,
on_change=on_change,
tooltip="Whether to perform the median on 1D or 2D view of the data"
)
_, filtering_dim = add_property_to_form(
'Filtering dim',
Type.INT,
default_value=1,
valid_values=(1, 2),
form=form,
on_change=on_change,
tooltip="Whether to use a 1D or 2D low-pass filter. "
"This uses different Sarepy methods")
return {
'sigma': sigma,
'size': size,
'window_dim': window_dim,
'filtering_dim': filtering_dim
}
def register_gui(form, on_change, view):
from mantidimaging.gui.utility import add_property_to_form
label, roi_field = add_property_to_form("ROI",
Type.STR,
form=form,
on_change=on_change,
default_value="0, 0, 200, 200")
add_property_to_form("Select ROI",
Type.BUTTON,
form=form,
on_change=on_change,
run_on_press=lambda: view.roi_visualiser(roi_field))
return {'roi_field': roi_field}
def register_gui(form, on_change, view):
label, roi_field = add_property_to_form("ROI",
Type.STR,
form=form,
on_change=on_change,
default_value="0, 0, 200, 200")
add_property_to_form(
"Select ROI",
"button",
form=form,
on_change=on_change,
run_on_press=lambda: view.roi_visualiser(roi_field))
return {'roi_field': roi_field}
def register_gui(form: 'QFormLayout', on_change: Callable, view: 'BasePresenter') -> Dict[str, 'QWidget']:
from mantidimaging.gui.utility import add_property_to_form
_, value_widget = add_property_to_form("Divide by", Type.FLOAT, form=form, on_change=on_change)
assert value_widget is not None, "Requested widget was for FLOAT, got None instead"
value_widget.setDecimals(7)
_, unit_widget = add_property_to_form("Unit",
Type.CHOICE,
valid_values=["micron", "cm"],
form=form,
on_change=on_change)
return {'value_widget': value_widget}
def register_gui(form, on_change, view):
from mantidimaging.gui.utility import add_property_to_form
_, radius_field = add_property_to_form('Radius',
Type.FLOAT,
0.95, (0.0, 1.0),
form=form,
on_change=on_change)
_, value_field = add_property_to_form('Set to value',
Type.FLOAT,
0, (-10000, 10000),
form=form,
on_change=on_change)
return {'radius_field': radius_field, 'value_field': value_field}
def register_gui(form, on_change,
view: FiltersWindowView) -> Dict[str, Any]:
from mantidimaging.gui.utility import add_property_to_form
_, min_input_widget = add_property_to_form(
'Min input',
Type.FLOAT,
form=form,
on_change=on_change,
valid_values=(-2147483647, 2147483647),
tooltip="Minimum value of the data that will be used.\n"
"Anything below this will be clipped to 0")
min_input_widget.setDecimals(8)
_, max_input_widget = add_property_to_form(
'Max input',
Type.FLOAT,
form=form,
on_change=on_change,
default_value=5.0,
valid_values=(-2147483647, 2147483647),
tooltip="Maximum value of the data that will be used.\n"
"Anything above it will be clipped to 0")
max_input_widget.setDecimals(8)
_, max_output_widget = add_property_to_form(
'Max output',
Type.FLOAT,
form=form,
on_change=on_change,
default_value=65535.0,
valid_values=(1, 2147483647),
tooltip="Maximum value of the OUTPUT images. They will \n"
"be rescaled to range [0, MAX OUTPUT]")
max_output_widget.setDecimals(8)
_, preset_widget = add_property_to_form(
'Preset',
Type.CHOICE,
form=form,
on_change=on_change,
valid_values=["Use values from above", "int8", "int16", "int32"],
tooltip="Provides pre-set ranges to rescale to.")
return {
'min_input_widget': min_input_widget,
'max_input_widget': max_input_widget,
'max_output_widget': max_output_widget,
'preset_widget': preset_widget
}
def register_gui(form, on_change, view):
label, roi_field = add_property_to_form("Air Region",
Type.STR,
form=form,
on_change=on_change,
default_value="0, 0, 200, 200")
add_property_to_form(
"Select Air Region",
"button",
form=form,
on_change=on_change,
run_on_press=lambda: view.roi_visualiser(roi_field))
_, mode_field = add_property_to_form(
'Normalise Mode',
Type.CHOICE,
valid_values=modes(),
form=form,
on_change=on_change,
tooltip="Method to normalise output values")
_, flat_field_widget = add_property_to_form(
"Flat file",
Type.STACK,
form=form,
filters_view=view,
on_change=on_change,
tooltip="Flat images to be used for normalising.")
assert isinstance(flat_field_widget, StackSelectorWidgetView)
flat_field_widget.setMaximumWidth(375)
flat_field_widget.subscribe_to_main_window(view.main_window)
flat_field_widget.try_to_select_relevant_stack("Flat")
flat_field_widget.try_to_select_relevant_stack("Flat Before")
flat_field_widget.setEnabled(False)
mode_field.currentTextChanged.connect(
lambda text: enable_correct_fields_only(text, flat_field_widget))
return {
'roi_field': roi_field,
'norm_mode': mode_field,
'flat_field': flat_field_widget
}
def register_gui(form, on_change, view):
from mantidimaging.gui.utility import add_property_to_form
_, radius_field = add_property_to_form(
'Radius',
Type.FLOAT,
0.95, (0.01, 0.99),
form=form,
on_change=on_change,
tooltip="Radius [0, 1] of image that should be left untouched.")
_, value_field = add_property_to_form('Set to value',
Type.FLOAT,
0, (-10000, 10000),
form=form,
on_change=on_change,
tooltip="The value of the mask.")
return {'radius_field': radius_field, 'value_field': value_field}
def register_gui(form, on_change, view):
from mantidimaging.gui.utility import add_property_to_form
range1 = (0, 1000000)
range2 = (-1000000, 1000000)
_, x_field = add_property_to_form('Abcissa X',
Type.INT,
valid_values=range1,
form=form,
on_change=on_change)
_, y_field = add_property_to_form('Ordinate Y',
Type.INT,
valid_values=range1,
form=form,
on_change=on_change)
_, thresh = add_property_to_form('Threshold',
Type.FLOAT,
valid_values=range2,
form=form,
on_change=on_change)
_, thresh_min = add_property_to_form('Threshold Min',
Type.FLOAT,
valid_values=range2,
form=form,
on_change=on_change)
_, thresh_max = add_property_to_form('Threshold Max',
Type.FLOAT,
valid_values=range2,
form=form,
on_change=on_change)
_, theta = add_property_to_form('Theta',
Type.INT,
valid_values=(-1000, 1000),
form=form,
on_change=on_change)
_, rwidth = add_property_to_form('RWidth',
Type.INT,
valid_values=range2,
form=form,
on_change=on_change)
return {
"x_field": x_field,
"y_field": y_field,
"thresh": thresh,
"thresh_min": thresh_min,
"thresh_max": thresh_max,
"theta": theta,
"rwidth": rwidth,
}
def register_gui(form, on_change, view):
from mantidimaging.gui.utility import add_property_to_form
_, threshold_field = add_property_to_form('Threshold',
'float',
0.95, (0.0, 1.0),
form=form,
on_change=on_change)
threshold_field.setSingleStep(0.05)
return {'threshold_field': threshold_field}
def register_gui(form, on_change, view):
from mantidimaging.gui.utility import add_property_to_form
_, angle = add_property_to_form('Angle of rotation\ncounter clockwise (degrees)',
Type.FLOAT,
0, (-180, 180),
form=form,
on_change=on_change)
angle.setDecimals(7)
return {"angle": angle}
def register_gui(form, on_change, view):
from mantidimaging.gui.utility import add_property_to_form
_, angle = add_property_to_form('Angle of rotation\ncounter clockwise (degrees)',
Type.FLOAT,
0, (-359, 359),
form=form,
on_change=on_change,
tooltip="How much degrees to rotate counter-clockwise")
angle.setDecimals(7)
return {"angle": angle}
def register_gui(form, on_change, view):
from mantidimaging.gui.utility import add_property_to_form
label, _ = add_property_to_form("This filter requires sinograms\nto produce a sensible result.",
Type.LABEL,
form=form,
on_change=on_change)
# Filter type option
_, value_filter_type = add_property_to_form('Filter Type', Type.CHOICE, form=form, on_change=on_change)
# Wavelet options
_, value_wf_level = add_property_to_form('Level',
Type.INT,
default_value=1,
valid_values=(0, 100),
form=form,
on_change=on_change)
_, value_wf_wname = add_property_to_form('Wavelet Filter',
Type.CHOICE,
valid_values=wavelet_names(),
form=form,
on_change=on_change)
_, value_wf_sigma = add_property_to_form('Sigma', Type.FLOAT, 2.0, (0.0, 100.0), form=form, on_change=on_change)
# Titarenko options
# _, value_ti_nblock = add_property_to_form('Number of Blocks',
# Type.INT,
# 0, (0, 100),
# form=form,
# on_change=on_change)
#
# _, value_ti_alpha = add_property_to_form('Alpha', Type.FLOAT, 1.5, form=form, on_change=on_change)
# Smoothing filter options
_, value_sf_size = add_property_to_form('Size', Type.INT, 5, (0, 100), form=form, on_change=on_change)
# ('titarenko', [value_ti_nblock, value_ti_alpha])
filters = [('fourier-wavelet', [value_wf_level, value_wf_wname, value_wf_sigma]),
('smoothing-filter', [value_sf_size])]
def on_filter_type_change(name):
for f in filters:
enabled = name == f[0]
for ui_item in f[1]:
ui_item.setEnabled(enabled)
on_change()
value_filter_type.addItems([f[0] for f in filters])
value_filter_type.currentIndexChanged[str].connect(on_filter_type_change)
on_filter_type_change(value_filter_type.currentText())
return {
"value_filter_type": value_filter_type,
"value_wf_level": value_wf_level,
"value_wf_wname": value_wf_wname,
"value_wf_sigma": value_wf_sigma,
"value_sf_size": value_sf_size,
}
def register_gui(form: 'QFormLayout', on_change: Callable,
view: 'BasePresenter') -> Dict[str, Any]:
from mantidimaging.gui.utility import add_property_to_form
_, value_widget = add_property_to_form(
"Divide by",
Type.FLOAT,
form=form,
on_change=on_change,
tooltip="Value the data will be divided by")
assert value_widget is not None, "Requested widget was for FLOAT, got None instead"
value_widget.setDecimals(7)
_, unit_widget = add_property_to_form(
"Unit",
Type.CHOICE,
valid_values=["micron", "cm"],
form=form,
on_change=on_change,
tooltip="The unit of the input number. "
"Microns will be converted to cm before division")
return {'value_widget': value_widget, 'unit_widget': unit_widget}
def register_gui(form, on_change,
view: FiltersWindowView) -> Dict[str, Any]:
from mantidimaging.gui.utility import add_property_to_form
_, min_input_widget = add_property_to_form('Min input',
Type.FLOAT,
form=form,
on_change=on_change,
valid_values=(-2147483647,
2147483647))
_, max_input_widget = add_property_to_form('Max input',
Type.FLOAT,
form=form,
on_change=on_change,
default_value=5.0,
valid_values=(-2147483647,
2147483647))
_, max_output_widget = add_property_to_form('Max output',
Type.FLOAT,
form=form,
on_change=on_change,
default_value=65535.0,
valid_values=(1,
2147483647))
_, preset_widget = add_property_to_form(
'Preset',
Type.CHOICE,
form=form,
on_change=on_change,
valid_values=["Use values from above", "int8", "int16", "int32"])
return {
'min_input_widget': min_input_widget,
'max_input_widget': max_input_widget,
'max_output_widget': max_output_widget,
'preset_widget': preset_widget
}
def load_filter(self, filter_idx, plugin_parameters=None):
delete_all_widgets_from_layout(self.view.filterPropertiesLayout)
savu_filter = self.model.filter(filter_idx)
parameters_widgets: List[QWidget] = []
for parameter in savu_filter.visible_parameters():
value = plugin_parameters.get(parameter.name, parameter.value) if plugin_parameters \
else parameter.value
label, widget = add_property_to_form(
parameter.name,
parameter.type,
value,
tooltip=parameter.description,
form=self.view.filterPropertiesLayout,
)
parameters_widgets.append(widget)
self.current_filter = (savu_filter, parameters_widgets)
self.view.set_description(savu_filter.synopsis, savu_filter.info)
def register_gui(form, on_change, view):
# Rebin by uniform factor options
_, factor = add_property_to_form('Factor',
'float',
0.5, (0.0, 1.0),
on_change=on_change)
factor.setSingleStep(0.05)
# Rebin to target shape options
shape_range = (0, 9999)
_, shape_x = add_property_to_form('X',
Type.INT,
valid_values=shape_range,
on_change=on_change)
_, shape_y = add_property_to_form('Y',
Type.INT,
valid_values=shape_range,
on_change=on_change)
from PyQt5 import Qt
shape_fields = Qt.QHBoxLayout()
shape_fields.addWidget(shape_x)
shape_fields.addWidget(shape_y)
# Rebin dimension selection options
rebin_by_factor_radio = Qt.QRadioButton("Rebin by Factor")
def size_by_factor_toggled(enabled):
factor.setEnabled(enabled)
on_change()
rebin_by_factor_radio.toggled.connect(size_by_factor_toggled)
rebin_to_dimensions_radio = Qt.QRadioButton("Rebin to Dimensions")
def size_by_dimensions_toggled(enabled):
shape_x.setEnabled(enabled)
shape_y.setEnabled(enabled)
on_change()
rebin_to_dimensions_radio.toggled.connect(size_by_dimensions_toggled)
# Rebin mode options
label_mode = Qt.QLabel("Mode")
mode_field = Qt.QComboBox()
mode_field.addItems(modes())
form.addRow(rebin_to_dimensions_radio, shape_fields)
form.addRow(rebin_by_factor_radio, factor)
form.addRow(label_mode, mode_field)
# Ensure good default UI state
rebin_to_dimensions_radio.setChecked(True)
rebin_by_factor_radio.setChecked(True)
return {
"rebin_to_dimensions_radio": rebin_to_dimensions_radio,
"shape_x": shape_x,
"shape_y": shape_y,
"rebin_by_factor_radio": rebin_by_factor_radio,
"factor": factor,
"mode_field": mode_field,
}
def register_gui(form, on_change, view):
from mantidimaging.gui.utility import add_property_to_form
range1 = (0, 1000000)
range2 = (-1000000, 1000000)
_, x_field = add_property_to_form(
'Center of rotation X position',
Type.INT,
valid_values=range1,
form=form,
on_change=on_change,
tooltip="abscissa location of center of rotation")
_, y_field = add_property_to_form(
'Center of rotation Y position',
Type.INT,
valid_values=range1,
form=form,
on_change=on_change,
tooltip="ordinate location of center of rotation")
_, thresh = add_property_to_form(
'Threshold',
Type.FLOAT,
valid_values=range2,
form=form,
on_change=on_change,
tooltip="maximum value of an offset due to a ring artifact")
_, thresh_min = add_property_to_form(
'Threshold Min',
Type.FLOAT,
valid_values=range2,
form=form,
on_change=on_change,
tooltip="min value for portion of image to filter")
_, thresh_max = add_property_to_form(
'Threshold Max',
Type.FLOAT,
valid_values=range2,
form=form,
on_change=on_change,
tooltip="max value for portion of image to filter")
_, theta = add_property_to_form(
'Theta',
Type.INT,
valid_values=(-1000, 1000),
form=form,
on_change=on_change,
tooltip="minimum angle in degrees to be considered ring artifact")
_, rwidth = add_property_to_form(
'RWidth',
Type.INT,
valid_values=range2,
form=form,
on_change=on_change,
tooltip="Maximum width of the rings to be filtered in pixels")
return {
"x_field": x_field,
"y_field": y_field,
"thresh": thresh,
"thresh_min": thresh_min,
"thresh_max": thresh_max,
"theta": theta,
"rwidth": rwidth,
}
