def main():
logger = logging.getLogger("Mapper")
logger.debug("Start")
mapper = Mapper(mw_endpoint, key_queue_endpoint, ventilator_endpoint,
mappers_ready_endpoint)
mapper.start(map_fun)
logger.debug("End")
def cria_questao():
data = request.json['data']
if len(ast.literal_eval(data)['enunciado']) == 0:
output = {
"error": "Questão Vazia",
"url": request.url,
}
res = jsonify(output)
res.status_code = 401
else:
if data:
mapper = Mapper()
questao = mapper.salva_questao(data)
output = {
"ok": "Sucesso",
"url": request.url,
}
res = jsonify(output)
res.status_code = 200
else:
output = {
"error": "No results found. Check url again",
"url": request.url,
}
res = jsonify(output)
res.status_code = 404
return res
def setUp(self) -> None:
self.mapper = Mapper(
playerSocket=Mock(spec=socket.socket),
gameSocket=Mock(spec=socket.socket),
outputFormat="normal",
interface="text",
promptTerminator=None,
gagPrompts=False,
findFormat="",
isEmulatingOffline=False,
)
self.mapper.daemon = True # Allow unittest to quit if mapper thread does not close properly.
self.legacyHandlerNames: Generator[str, None, None] = (
handlerName for handlerName in dir(self.mapper)
if handlerName.startswith("mud_event_")
and callable(getattr(Mapper, handlerName)))
for handlerName in self.legacyHandlerNames:
setattr(self.mapper, handlerName, Mock())
def setUp(self) -> None:
self.mapper: Mapper = Mapper(
playerSocket=Mock(spec=socket.socket),
gameSocket=Mock(spec=socket.socket),
outputFormat="normal",
interface="text",
promptTerminator=None,
gagPrompts=False,
findFormat="",
isEmulatingOffline=False,
)
self.mapper.daemon = True # Allow unittest to quit if mapper thread does not close properly.
class TestMapper(unittest.TestCase):
_example_as_row = '2016;5;2016.02.06.;0;0 Ft;30;1 910 065 Ft;2955;20 530 Ft;86050;1 370 Ft;11;15;26;39;78'
_example_as_dict = [(11, 1), (15, 1), (26, 1), (39, 1), (78, 1)]
_otos_min_expected_log = 'resources/otos.min.expected.txt'
_otos_min_result_log = 'resources/otos.min.result.txt'
_otos_min_csv = 'resources/otos.min.txt'
def setUp(self):
self.test_subject = Mapper()
def tearDown(self):
self.test_subject = None
def test_getNumbers_with_valid_input(self):
expected = self._example_as_dict
actual = self.test_subject.getNumbers(self._example_as_row)
self.assertEqual(expected, actual)
def test_getNumbers_with_invalid_input(self):
expected = []
actual = self.test_subject.getNumbers('')
self.assertEqual(expected, actual)
def test_processInput_with_valid_input(self):
with open(self._otos_min_csv) as f:
self._remove_logfile(self._otos_min_result_log)
with open(self._otos_min_result_log, 'a') as r:
self.test_subject.processInput(f.readlines(), r)
with open(self._otos_min_expected_log) as f:
expected = f.read().strip()
with open(self._otos_min_result_log) as r:
actual = r.read().strip()
self.assertEqual(expected, actual)
def _remove_logfile(self, filename):
try:
remove(filename)
except Exception:
pass
def _setup_anticipator(self, ppo_cfg: Config, ans_cfg: Config) -> None:
r"""Sets up actor critic and agent for PPO.
Args:
ppo_cfg: config node with relevant params
ans_cfg: config node for ActiveNeuralSLAM model
Returns:
None
"""
try:
os.mkdir(self.config.TENSORBOARD_DIR)
except:
pass
logger.add_filehandler(os.path.join(self.config.TENSORBOARD_DIR, "run.log"))
sem_cfg = ans_cfg.SEMANTIC_ANTICIPATOR
mapper_cfg = ans_cfg.MAPPER
# Create occupancy anticipation model
[imgh, imgw] = ans_cfg['image_scale_hw']
sem_model = SemAnticipationWrapper(
SemAnticipator(sem_cfg), mapper_cfg.map_size, (imgh, imgw)
)
self.mapper = Mapper(mapper_cfg,sem_model)
self.mapper_agent = MapUpdate(
self.mapper,
lr=mapper_cfg.lr,
eps=mapper_cfg.eps,
label_id=mapper_cfg.label_id,
max_grad_norm=mapper_cfg.max_grad_norm,
pose_loss_coef=mapper_cfg.pose_loss_coef,
semantic_anticipator_type=ans_cfg.SEMANTIC_ANTICIPATOR.type,
freeze_projection_unit=mapper_cfg.freeze_projection_unit,
num_update_batches=mapper_cfg.num_update_batches,
batch_size=mapper_cfg.map_batch_size,
mapper_rollouts=self.mapper_rollouts,
)
if ans_cfg.model_path != "":
self.resume_checkpoint(ans_cfg.model_path)
ans_cfg = trainer.config.RL.ANS
mapper_cfg = trainer.config.RL.ANS.MAPPER
occ_cfg = trainer.config.RL.ANS.SEMANTIC_ANTICIPATOR
trainer.device = (
torch.device("cuda", 1)
if torch.cuda.is_available()
else torch.device("cpu")
)
sem_cfg = ans_cfg.SEMANTIC_ANTICIPATOR
mapper_cfg = ans_cfg.MAPPER
[imgh, imgw] = ans_cfg['image_scale_hw']
sem_model = SemAnticipationWrapper(
SemAnticipator(sem_cfg), mapper_cfg.map_size, (imgh, imgw)
)
trainer.mapper = Mapper(mapper_cfg,sem_model).to(trainer.device)
checkpoints = glob.glob(f"{trainer.config.CHECKPOINT_FOLDER}/*.pth")
ppo_cfg = trainer.config.RL.PPO
# Load lastest checkpoint
last_ckpt = sorted(checkpoints, key=lambda x: int(x.split(".")[1]))[-1]
checkpoint_path = last_ckpt
# Restore checkpoints to models
# ckpt_dict = trainer.load_checkpoint('data/new_checkpoints_se_256/ckpt.179.pth')
ckpt_dict = trainer.load_checkpoint(checkpoint_path)
trainer.mapper.load_state_dict(ckpt_dict["mapper"])
depth_projection_net = DepthProjectionNet(
trainer.config.RL.ANS.SEMANTIC_ANTICIPATOR.EGO_PROJECTION
)
class TestMapper_handleMudEvent(TestCase):
@patch.object(Mapper, "loadRooms", Mock()) # Speedup test execution.
def setUp(self) -> None:
self.mapper = Mapper(
playerSocket=Mock(spec=socket.socket),
gameSocket=Mock(spec=socket.socket),
outputFormat="normal",
interface="text",
promptTerminator=None,
gagPrompts=False,
findFormat="",
isEmulatingOffline=False,
)
self.mapper.daemon = True # Allow unittest to quit if mapper thread does not close properly.
self.legacyHandlerNames: Generator[str, None, None] = (
handlerName for handlerName in dir(self.mapper)
if handlerName.startswith("mud_event_")
and callable(getattr(Mapper, handlerName)))
for handlerName in self.legacyHandlerNames:
setattr(self.mapper, handlerName, Mock())
def test_legacyMudEventHandlers(self) -> None:
events: Generator[str, None,
None] = (handlerName[len("mud_event_"):]
for handlerName in self.legacyHandlerNames)
handlers: Generator[Mock, None, None] = (getattr(
self.mapper,
handlerName) for handlerName in self.legacyHandlerNames)
for event, handler in zip(events, handlers):
sampleInput1: bytes = b"Helol oje"
sampleInput2: bytes = b"no sir, away. a papaya war is on"
sampleInput3: bytes = b"delting no sir, away. a papaya war is on"
self.mapper.registerMudEventHandler(event, handler)
self.mapper.handleMudEvent(event, sampleInput1)
handler.assert_called_once_with(sampleInput1.decode("us-ascii"))
handler.reset_mock()
self.mapper.handleMudEvent(event, sampleInput2)
handler.assert_called_once_with(sampleInput2.decode("us-ascii"))
handler.reset_mock()
self.mapper.deregisterMudEventHandler(event, handler)
self.mapper.handleMudEvent(event, sampleInput3)
handler.assert_not_called()
def test_newMudEventHandlers(self) -> None:
events: Tuple[str, ...] = (
"sillyEvent",
"room",
"otherEvent",
)
for event in events:
handler: Mock = Mock()
sampleInput1: bytes = b"Helol oje"
sampleInput2: bytes = b"no sir, away. a papaya war is on"
sampleInput3: bytes = b"delting no sir, away. a papaya war is on"
self.mapper.registerMudEventHandler(event, handler)
self.mapper.handleMudEvent(event, sampleInput1)
handler.assert_called_once_with(sampleInput1.decode("us-ascii"))
handler.reset_mock()
self.mapper.handleMudEvent(event, sampleInput2)
handler.assert_called_once_with(sampleInput2.decode("us-ascii"))
handler.reset_mock()
self.mapper.deregisterMudEventHandler(event, handler)
self.mapper.handleMudEvent(event, sampleInput3)
handler.assert_not_called()
def test_handleMudEvent_failsGracefullyWhenHandlingAnUnknownEvent(
self) -> None:
unknownEvents: Tuple[str, ...] = (
"unkk",
"New_game_event",
"room",
"<interesting-tag-<in>-a-tag>",
)
for unknownEvent in unknownEvents:
# simply require this to execute without raising an exception
self.mapper.handleMudEvent(unknownEvent, b"meaningless input")
def get_episode_map(env:habitat.RLEnv, mapper:Mapper, M:int, config:CN, device:torch.device):
"""Given the environment and the configuration, compute the global
top-down wall and seen area maps by sampling maps for individual locations
along a uniform grid in the environment, and registering them.
"""
# Initialize a global map for the episode
global_wall_map = torch.zeros(1, 2, M, M).to(device)
global_seen_map = torch.zeros(1, 2, M, M).to(device)
grid_size = config.TASK.GT_EGO_MAP.MAP_SCALE
coordinate_max = maps.COORDINATE_MAX
coordinate_min = maps.COORDINATE_MIN
resolution = (coordinate_max - coordinate_min) / grid_size
grid_resolution = (int(resolution), int(resolution))
top_down_map = maps.get_topdown_map(
env.habitat_env.sim, grid_resolution, 20000, draw_border=False,
)
map_w, map_h = top_down_map.shape
intervals = (max(int(0.5 / grid_size), 1), max(int(0.5 / grid_size), 1))
x_vals = np.arange(0, map_w, intervals[0], dtype=int)
y_vals = np.arange(0, map_h, intervals[1], dtype=int)
coors = np.stack(np.meshgrid(x_vals, y_vals), axis=2) # (H, W, 2)
coors = coors.reshape(-1, 2) # (H*W, 2)
map_vals = top_down_map[coors[:, 0], coors[:, 1]]
valid_coors = coors[map_vals > 0]
real_x_vals = coordinate_max - valid_coors[:, 0] * grid_size
real_z_vals = coordinate_min + valid_coors[:, 1] * grid_size
start_y = env.habitat_env.sim.get_agent_state().position[1]
for j in tqdm.tqdm(range(real_x_vals.shape[0]),desc='occupacy map', position=2):
for theta in np.arange(-np.pi, np.pi, np.pi / 3.0):
position = [
real_x_vals[j].item(),
start_y.item(),
real_z_vals[j].item(),
]
rotation = [
0.0,
np.sin(theta / 2).item(),
0.0,
np.cos(theta / 2).item(),
]
sim_obs = env.habitat_env.sim.get_observations_at(
position, rotation, keep_agent_at_new_pose=True,
)
episode = env.habitat_env.current_episode
obs = env.habitat_env.task.sensor_suite.get_observations(
observations=sim_obs, episode=episode, task=env.habitat_env.task
)
ego_map_gt = torch.Tensor(obs["ego_map_gt"]).to(device)
ego_map_gt = rearrange(ego_map_gt, "h w c -> () c h w")
ego_wall_map_gt = torch.Tensor(obs["ego_wall_map_gt"]).to(device)
ego_wall_map_gt = rearrange(ego_wall_map_gt, "h w c -> () c h w")
pose_gt = torch.Tensor(obs["pose_gt"]).unsqueeze(0).to(device)
global_seen_map = mapper.ext_register_map(
global_seen_map, ego_map_gt, pose_gt
)
global_wall_map = mapper.ext_register_map(
global_wall_map, ego_wall_map_gt, pose_gt
)
global_wall_map_np = asnumpy(rearrange(global_wall_map, "b c h w -> b h w c")[0])
global_seen_map_np = asnumpy(rearrange(global_seen_map, "b c h w -> b h w c")[0])
return global_seen_map_np, global_wall_map_np
def main(args):
config = get_config()
mapper_config = config.RL.ANS.MAPPER
mapper_config.defrost()
mapper_config.map_size = 130
mapper_config.map_scale = 0.02
mapper_config.freeze()
mapper = Mapper(mapper_config, None)
M = args.global_map_size
skip_scene = args.skip_scene
config_path = args.config_path
save_dir = args.save_dir
safe_mkdir(save_dir)
seen_map_save_root = os.path.join(save_dir, "seen_area_maps")
wall_map_save_root = os.path.join(save_dir, "wall_maps")
semantic_map_save_root = os.path.join(save_dir, "semantic_maps")
json_save_path = os.path.join(save_dir, "all_maps_info.json")
config = habitat_extensions.get_extended_config(config_path)
scenes_list = glob.glob(f"")
dataset_path = config.DATASET.DATA_PATH.replace("{split}", config.DATASET.SPLIT)
with gzip.open(dataset_path, "rt") as fp:
dataset = json.load(fp)
num_episodes = len(dataset["episodes"])
print("===============> Loading data per scene")
scene_to_data = {}
if num_episodes == 0:
content_path = os.path.join(
dataset_path[: -len(f"{config.DATASET.SPLIT}.json.gz")], "content"
)
scene_paths = glob.glob(f"{content_path}/*")
print(f"Number of scenes found: {len(scene_paths)}")
for scene_data_path in scene_paths:
with gzip.open(scene_data_path, "rt") as fp:
scene_data = json.load(fp)
num_episodes += len(scene_data["episodes"])
scene_id = scene_data["episodes"][0]["scene_id"].split("/")[-1]
scene_to_data[scene_id] = scene_data["episodes"]
else:
for ep in dataset["episodes"]:
scene_id = ep["scene_id"].split("/")[-1]
if scene_id not in scene_to_data:
scene_to_data[scene_id] = []
scene_to_data[scene_id].append(ep)
print("===============> Computing heights for different floors in each scene")
scenes_to_floor_heights = {}
for scene_id, scene_data in scene_to_data.items():
# Identify the number of unique floors in this scene
floor_heights = []
for ep in scene_data:
height = ep["start_position"][1]
if len(floor_heights) == 0:
floor_heights.append(height)
# Measure height difference from all existing floors
d2floors = map(lambda x: abs(x - height), floor_heights)
d2floors = np.array(list(d2floors))
if not np.any(d2floors < 0.5):
floor_heights.append(height)
# Store this in the dict
scenes_to_floor_heights[scene_id] = floor_heights
env = DummyRLEnv(config=config)
env.seed(1234)
_ = env.reset()
device = torch.device("cuda:0")
safe_mkdir(seen_map_save_root)
safe_mkdir(wall_map_save_root)
safe_mkdir(semantic_map_save_root)
# Data format for saving top-down maps per scene:
# For each split, create a json file that contains the following dictionary:
# key - scene_id
# value - [{'floor_height': ...,
# 'seen_map_path': ...,
# 'wall_map_path': ...,
# 'world_position': ...,
# 'world_heading': ...},
# .,
# .,
# .,
# ]
# The floor_height specifies a single height value on that floor.
# All other heights within 0.5m of this height will correspond to this floor.
# The *_map_path specifies the path to a .npy file that contains the
# corresponding map. This map is in the world coordinate system, not episode
# centric start-view coordinate system.
# The world_position is the (X, Y, Z) position of the agent w.r.t. which this
# map was computed. The world_heading is the clockwise rotation (-Z to X)
# of the agent in the world coordinates.
# The .npy files will be stored in seen_map_save_root and wall_map_save_root.
# Create top-down maps per scene, per floor
per_scene_per_floor_maps = {}
print("===============> generate meta information for gt map")
for target_scene in tqdm.tqdm(scene_to_data.keys()):
per_scene_per_floor_maps[target_scene] = {}
for episode in scene_to_data[target_scene]:
scene_id = target_scene
start_position = episode['start_position']
start_rotation = episode['start_rotation']
start_height = start_position[1]
floor_heights = scenes_to_floor_heights[scene_id]
d2floors = map(lambda x: abs(x - start_height), floor_heights)
d2floors = np.array(list(d2floors))
floor_idx = np.where(d2floors < 0.5)[0][0].item()
if floor_idx in per_scene_per_floor_maps[scene_id]:
continue
start_heading = compute_heading_from_quaternion(quaternion_from_coeff(start_rotation))
seen_map_save_path = f"{seen_map_save_root}/{scene_id}_{floor_idx}.npy"
wall_map_save_path = f"{wall_map_save_root}/{scene_id}_{floor_idx}.npy"
semantic_map_save_path = f"{semantic_map_save_root}/{scene_id}_{floor_idx}.npy"
save_dict = {
"seen_map_path": seen_map_save_path,
"wall_map_path": wall_map_save_path,
"semantic_map_path": semantic_map_save_path,
"floor_height": start_height,
"start_rotation": start_rotation,
"world_position": start_position,
"world_heading": start_heading,
"scene_id": episode['scene_id']
}
per_scene_per_floor_maps[scene_id][floor_idx] = save_dict
if len(per_scene_per_floor_maps[scene_id]) == len(scenes_to_floor_heights[scene_id]):
break
print("===============> save meta information for gt map")
save_json = {}
for scene in per_scene_per_floor_maps.keys():
scene_save_data = []
for floor_idx, floor_data in per_scene_per_floor_maps[scene].items():
scene_save_data.append(floor_data)
save_json[scene] = scene_save_data
json.dump(save_json, open(json_save_path, "w"))
print("===============> start to draw semantic map")
scene_ids = sorted(list(per_scene_per_floor_maps.keys()))
print(scene_ids)
start_scene = scene_ids[skip_scene]
print(f"===============> start with scene {start_scene}")
for target_scene in tqdm.tqdm(scene_ids[skip_scene:],desc='scenes', position=0):
for floor_idx in per_scene_per_floor_maps[target_scene]:
scene_meta_info = per_scene_per_floor_maps[target_scene][floor_idx]
# don't regenerate maps
if os.path.isfile(scene_meta_info['semantic_map_path']):
continue
print(scene_meta_info)
env.habitat_env.current_episode.start_position = scene_meta_info['world_position']
env.habitat_env.current_episode.start_rotation = scene_meta_info['start_rotation']
env.habitat_env.current_episode.scene_id = scene_meta_info['scene_id']
env.habitat_env.reconfigure(env.habitat_env._config)
_ = env.habitat_env.task.reset(env.habitat_env.current_episode)
scene_id = target_scene
agent_state = env.habitat_env.sim.get_agent_state()
start_position = np.array(agent_state.position)
global_seen_map, global_wall_map = get_episode_map(
env, mapper, M, config, device
)
#generate semantic layers
global_semantic_map = generate_semantic_layers(env,mapper, M,config,global_seen_map)
seen_map_save_path = f"{seen_map_save_root}/{scene_id}_{floor_idx}.npy"
wall_map_save_path = f"{wall_map_save_root}/{scene_id}_{floor_idx}.npy"
semantic_map_save_path = f"{semantic_map_save_root}/{scene_id}_{floor_idx}.npy"
np.save(seen_map_save_path, (global_seen_map > 0))
np.save(wall_map_save_path, (global_wall_map > 0))
np.save(semantic_map_save_path, (global_semantic_map > 0))
# clean the memory to avoid overflow
global_seen_map = None
global_wall_map = None
global_semantic_map = None
gc.collect()
u,v=np.meshgrid(u,v)
a = 2
b = 9
x = (b + a*np.cos(u)) * np.cos(v)
y = (b + a*np.cos(u)) * np.sin(v)
z = a * np.sin(u)
return np.vstack((x.ravel(), y.ravel(), z.ravel())).T
points = torus()
mapper = Mapper(
bins=4,
filter_function='by_coordinate',
coordinate=1,
clustering_function='agglomerative',
linkage="average",
distance=15
)
graph = mapper.fit(points)
mapper.plot_vertices()
mapper.plot_intervals()
mapper.plot_clusters()
mapper.plot_graph()
mapper.plot_graph_in_plane()
mapper.plot_persistence_homology()
# Silhouette score
mapper = Mapper(
bins=4,
import numpy as np
from mapper.mapper import Mapper
with open('point_clouds/pliers.txt') as f:
data = f.readlines()
points = np.array([list(map(float, p.strip().split(' '))) for p in data])
mapper = Mapper(bins=5,
clustering_function="agglomerative",
linkage="average",
coordinate=-1,
max_k=5)
graph = mapper.fit(points)
mapper.plot_vertices()
mapper.plot_intervals()
mapper.plot_clusters()
mapper.plot_graph()
mapper.plot_graph_in_plane()
mapper.plot_persistence_homology()
def setUp(self):
self.test_subject = Mapper()