def test_extract_ss_from_ss_line_has_correct_sequence(self): lines = mapper.get_query_ss_pred_lines( self.lines[self.line_ranges[0][0]:self.line_ranges[0][1]]) ss = mapper.extract_ss_from_ss_line(lines[0]) self.assertTrue(ss.startswith('CCC')) self.assertTrue(ss.endswith('CCC'))
def test_gather_query_ss_pred_gets_correct_lines(self): lines = mapper.get_query_ss_pred_lines( self.lines[self.line_ranges[0][0]:self.line_ranges[0][1]]) self.assertEqual(len(lines), 2) self.assertTrue(lines[0].startswith('Q ss_pred')) self.assertTrue(lines[1].startswith('Q ss_pred'))