def _handle_uploaded_file(f, name):
'''Handles a file upload to the projects QUOTE_FILES_ROOT
Expects a django InMemoryUpload object, and a filename'''
logger.debug('*** _handle_uploaded_file: enter ***')
retval = False
try:
ensure_repo_filestore_dir_with_owner(settings.QUOTE_FILES_ROOT)
destfname = os.path.join(settings.QUOTE_FILES_ROOT, name )
destination = open(destfname, 'wb+')
for chunk in f.chunks():
destination.write(chunk)
destination.close()
retval = set_repo_file_ownerships(destfname)
except Exception, e:
retval = False
logger.debug('\tException in file upload: %s' % (str(e)) )
def _handle_uploaded_file(f, name):
'''Handles a file upload to the projects QUOTE_FILES_ROOT
Expects a django InMemoryUpload object, and a filename'''
logger.debug('*** _handle_uploaded_file: enter ***')
retval = False
try:
ensure_repo_filestore_dir_with_owner(settings.QUOTE_FILES_ROOT)
destfname = os.path.join(settings.QUOTE_FILES_ROOT, name)
destination = open(destfname, 'wb+')
for chunk in f.chunks():
destination.write(chunk)
destination.close()
retval = set_repo_file_ownerships(destfname)
except Exception, e:
retval = False
logger.debug('\tException in file upload: %s' % (str(e)))
def ensure_dir(self):
"""
Creates all the experiment storage directories if they don't
exist, and sets their permissions.
"""
other_dirs = ["Project Background", "Data Processing", "Bioinformatics Analysis", "Report"]
# filter the other_dirs to remove ones which exist somewhere
# within the tree
existing_dirs = set(chain(*(d for r, d, f in os.walk(self.other_files_dir))))
other_dirs = [os.path.join(self.other_files_dir, subdir)
for subdir in other_dirs
if subdir not in existing_dirs]
for dir in [self.experiment_dir] + other_dirs:
try:
ensure_repo_filestore_dir_with_owner(dir)
except Exception, e:
pass # the exception is already logged in the ensure function
def _handle_uploaded_file(f, name):
'''Handles a file upload to the projects REPO_FILES_ROOT
Expects a django InMemoryUpload object, and a filename'''
logger.debug('*** _handle_uploaded_file: enter ***')
retval = False
try:
import os
reldir = os.path.dirname(name)
dest_fname = str(os.path.join(settings.REPO_FILES_ROOT, name))
ensure_repo_filestore_dir_with_owner(reldir)
destination = open(dest_fname, 'wb+')
for chunk in f.chunks():
destination.write(chunk)
destination.close()
retval = set_repo_file_ownerships(dest_fname)
except Exception, e:
retval = False
logger.exception('Exception in file upload')
def ensure_dir(self):
"""
Creates all the experiment storage directories if they don't
exist, and sets their permissions.
"""
other_dirs = ["Project Background", "Data Processing", "Bioinformatics Analysis", "Report"]
# filter the other_dirs to remove ones which exist somewhere
# within the tree
existing_dirs = set(chain(*(d for r, d, f in os.walk(self.other_files_dir))))
other_dirs = [os.path.join(self.other_files_dir, subdir)
for subdir in other_dirs
if subdir not in existing_dirs]
for dir in [self.experiment_dir] + other_dirs:
try:
ensure_repo_filestore_dir_with_owner(dir)
except Exception, e:
pass # the exception is already logged in the ensure function
def _handle_uploaded_file(f, name):
"""Handles a file upload to the projects REPO_FILES_ROOT
Expects a django InMemoryUpload object, and a filename"""
logger.debug("*** _handle_uploaded_file: enter ***")
retval = False
try:
import os
reldir = os.path.dirname(name)
dest_fname = str(os.path.join(settings.REPO_FILES_ROOT, name))
ensure_repo_filestore_dir_with_owner(reldir)
destination = open(dest_fname, "wb+")
for chunk in f.chunks():
destination.write(chunk)
destination.close()
retval = set_repo_file_ownerships(dest_fname)
except Exception, e:
retval = False
logger.exception("Exception in file upload")
def ensure_dir(self):
"Creates the data directory if it doesn't exist, and sets permissions."
ensure_repo_filestore_dir_with_owner(self.run_dir)
return self.run_dir
def _filepath(self, filename):
ensure_repo_filestore_dir_with_owner(sopdir)
return os.path.join(sopfs.location, self.version, filename)
def ensure_dir(self):
"Creates the data directory if it doesn't exist, and sets permissions."
ensure_repo_filestore_dir_with_owner(self.run_dir)
return self.run_dir
def sop_filepath(sop, filename):
ensure_repo_filestore_dir_with_owner(sopdir)
return os.path.join(sopfs.location, sop.version, filename)
