def test_read_rate_matrix(self):
arr = [[-3, 1, 1, 1], [1, -3, 1, 1], [1, 1, -3, 1], [1, 1, 1, -3]]
s = '\n'.join('\t'.join(str(x) for x in row) for row in arr)
sio = StringIO(s)
M = np.array(matrixio.read_matrix(sio))
assert_rate_matrix(M)
def test_read_square_matrix_good(self):
s = '1 2 3 \n 4 5 6 \n 7 8 9'
row_major_observed = matrixio.read_matrix(StringIO(s))
row_major_expected = [[1, 2, 3], [4, 5, 6], [7, 8, 9]]
self.assertEquals(row_major_observed, row_major_expected)
def test_read_square_matrix_bad(self):
s = '1 2 3 \n 4 5 6'
M = np.array(matrixio.read_matrix(StringIO(s)))
self.assertRaises(MatrixError, assert_square, M)
def test_read_rate_matrix(self):
arr = [[-3, 1, 1, 1], [1, -3, 1, 1], [1, 1, -3, 1], [1, 1, 1, -3]]
s = '\n'.join('\t'.join(str(x) for x in row) for row in arr)
sio = StringIO(s)
M = np.array(matrixio.read_matrix(sio))
assert_rate_matrix(M)
def test_read_square_matrix_good(self):
s = '1 2 3 \n 4 5 6 \n 7 8 9'
row_major_observed = matrixio.read_matrix(StringIO(s))
row_major_expected = [[1, 2, 3], [4, 5, 6], [7, 8, 9]]
self.assertEquals(row_major_observed, row_major_expected)
def test_read_square_matrix_bad(self):
s = '1 2 3 \n 4 5 6'
M = np.array(matrixio.read_matrix(StringIO(s)))
self.assertRaises(MatrixError, assert_square, M)