def PublicationType(self, element):
if element.text:
return PublicationType(self.pmid, element.text.strip())
from medic.orm import Medline, Section, Author, Descriptor, Qualifier, Database, Identifier, \
Chemical, Keyword, PublicationType
from medic.crud import _dump
DATA = [
Section(1, 1, 'Title', 'The Title'),
Section(1, 2, 'Abstract', 'The Abstract'),
Descriptor(1, 1, 'd_name', True),
Descriptor(1, 2, 'd_name'),
Qualifier(1, 1, 1, 'q_name', True),
Author(1, 1, 'first'),
Author(1, 2, 'last'),
Identifier(1, 'ns', 'id'),
Database(1, 'name', 'accession'),
PublicationType(1, 'some'),
PublicationType(1, 'another'),
Chemical(1, 1, 'name', 'uid'),
Keyword(1, 'NOTNLM', 1, 'name', True),
Medline(1, 'MEDLINE', 'journal', 'pub_date', date.today()),
]
class ParserMock:
def __init__(self, instances):
self.instances = instances
def parse(self, _):
for i in self.instances:
yield i
def testToRepr(self):
self.assertEqual('PublicationType<1:type>',
repr(PublicationType(1, 'type')))
def testRelations(self):
i = PublicationType(1, 'type')
self.sess.add(i)
self.sess.commit()
self.assertEqual([i], self.M.publication_types)
self.assertEqual(self.M, i.citation)
def testToString(self):
self.assertEqual('1\ttype\n', str(PublicationType(1, 'type')))