def __init__(self):
"""Default constructor"""
self.bqConn = bigQueryUtil.connection()
self.bqClient = bigQueryUtil.BigQueryClient()
self.connFactory = DBUtil.ConnectionFactory(
) # Default connection source, but Allow specification of alternative DB connection source
self.categoryBySourceDescr = dict(
) # Local cache to track the clinical item category table contents
self.clinicalItemByCategoryIdCode = dict(
) # Local cache to track clinical item table contents
self.itemCollectionByKeyStr = dict(
) # Local cache to track item collections
self.itemCollectionItemByCollectionIdItemId = dict(
) # Local cache to track item collection items
def connectionFactory(self):
"""Prepare a connection factory to the database specified
by the current request parameters.
"""
connParams = dict()
for key, value in self.requestData.iteritems():
if key.startswith("db"): # Look for db parameters
tagKey = key[len("db"):]
if len(value) > 0:
connParams[tagKey] = value
else:
connParams[tagKey] = None
return DBUtil.ConnectionFactory(connParams)
def __init__(self):
"""Default constructor"""
self.bqConn = bigQueryUtil.connection()
self.bqClient = bigQueryUtil.BigQueryClient()
self.connFactory = DBUtil.ConnectionFactory(
) # Default connection source, but Allow specification of alternative DB connection source
self.starrUtil = STARRUtil.StarrCommonUtils(self.bqClient)
self.categoryBySourceDescr = dict(
) # Local cache to track the clinical item category table contents
self.clinicalItemByCategoryIdExtId = dict(
) # Local cache to track clinical item table contents
self.itemCollectionByKeyStr = dict(
) # Local cache to track item collections
self.itemCollectionItemByCollectionIdItemId = dict(
) # Local cache to track item collection items
self.patient_items = dict() # Local cache of processed patient items
self.patient_item_collection_links = set(
) # Local cache of processed patient item collection links
def __init__(self):
self.connFactory = DBUtil.ConnectionFactory()
def __init__(self): "Default constructor" self.connFactory = DBUtil.ConnectionFactory(); # Default connection source self.decayCount = 0
def __init__(self):
self.connFactory = DBUtil.ConnectionFactory(
) # Default connection source
def __init__(self):
"""Default constructor"""
self.connFactory = DBUtil.ConnectionFactory(); # Default connection source, but Allow specification of alternative DB connection source
self.categoryBySourceDescr = dict(); # Local cache to track the clinical item category table contents
self.clinicalItemByCompositeKey = dict(); # Local cache to track clinical item table contents
def __init__(self):
self.connFactory = DBUtil.ConnectionFactory(); # Default connection source
self.maxClinicalItemId = None; # Can set to a value to limit what items will be processed. Particularly for setting to 0, so will only work on negative values, generally only test cases, while leaving "real" data alone
self.dataCache = dict(); # If set, use as in memory data cache. Set to None to avoid usage if having memory leak problems with persistent processes
self.queryCount = 0;
def __init__(self):
"""Default constructor"""
AssociationAnalysis.__init__(self)
self.connFactory = DBUtil.ConnectionFactory()
# Default connection source
self.dataManager = DataManager()
def __init__(self):
self.connFactory = DBUtil.ConnectionFactory()
# Default connection source
self.dataManager = DataManager()
def __init__(self):
BaseCPOEAnalysis.__init__(self);
self.connFactory = DBUtil.ConnectionFactory(); # Default connection source
