def test_usecase_3():
# a)
med_api = MednickAPI(server_address, '*****@*****.**', 'Pass1234')
fid_for_manual_upload = med_api.extract_var(
med_api.get_files(studyid='TEST'), '_id')[0] # get a random fid
data_post = {
'studyid': 'TEST',
'filetype': 'memtesta',
'data': {
'accuracy': 0.9
},
'versionid': 1,
'subjectid': 2,
'visitid': 1,
'sessionid': 1
}
log = med_api.upload_data(**data_post, fid=fid_for_manual_upload)
print('testcase3 log:')
print(log)
# b)
time.sleep(5) # Give db 5 seconds to update
correct_filename_versions = [
pytest.usecase_1_filename_version, pytest.usecase_2_filename_version
]
filename_versions = med_api.extract_var(
med_api.get_files(studyid='TEST', versionid=1), 'filename_version')
assert all([
fid in correct_filename_versions for fid in filename_versions
]), "Missing expected filename versions from two previous usecases"
# c)
time.sleep(5) # Give db 5 seconds to update
data_rows = med_api.get_data(studyid='TEST',
versionid=1,
format='flat_dict')
correct_row_2 = pytest.usecase_2_row2.copy()
correct_row_2.update({'memtesta.accuracy': 0.9, 'visitid': 1})
pytest.usecase_3_row2 = correct_row_2
correct_rows = [pytest.usecase_2_row1, correct_row_2]
for correct_row in correct_rows:
assert any(
[dict_issubset(data_row, correct_row) for data_row in data_rows])
if data_out is not None:
for data in data_out:
del data[
'filepath'] # we don't want to have dead refs, and fid will fill this role
file_specifiers = {
k: v
for k, v in file_info.items()
if k in upload_kwargs
}
data_keys = list(data.keys())
file_specifiers.update({
k: data.pop(k)
for k in data_keys if k in upload_kwargs
})
med_api.upload_data(data=data,
fid=file_info['_id'],
**file_specifiers)
print('Uploaded a data row for',
file_info['filename'])
print(med_api.get_data(**file_specifiers))
med_api.update_parsed_status(fid=file_info['_id'],
status=True)
except: # some kind of parsing error on a specific file
problem_files.append(file_info['filename'])
logging.exception('Problem file: ' + file_info['filename'])
print(
'\rCompleted parse. Sleeping for', parse_rate,
'seconds. Logger has ' + str(len(problem_files)) +
' problem files')