def test_traverse(self):
#
# Binary Tree
#
# Standard
node = Tree(n_children=2)
node.split()
node.get_child(0).split()
node.get_child(0).get_child(1).remove()
addresses = {
'breadth-first': [[], [0], [1], [0, 0]],
'depth-first': [[], [0], [0, 0], [1]]
}
for mode in ['depth-first', 'breadth-first']:
count = 0
for leaf in node.traverse(mode=mode):
self.assertEqual(leaf.get_node_address(),\
addresses[mode][count],\
'Binary tree traversal incorrect.')
count += 1
#
# Quadtree
#
node = Tree(n_children=4)
node.split()
node.get_child(1).split()
node.get_child(1).get_child(2).remove()
addresses = [[], [0], [1], [2], [3], [1, 0], [1, 1], [1, 3]]
count = 0
for n in node.traverse(mode='breadth-first'):
self.assertEqual(n.get_node_address(), addresses[count],\
'Incorrect address.')
count += 1
def test_is_regular(self):
# Make non-regular tree
node = Tree(regular=False, n_children=2)
self.assertFalse(node.is_regular(), 'Node is not regular.')
# Make regular tree
node = Tree(n_children=3)
self.assertTrue(node.is_regular(), 'Node should be regular.')
def test_get_children(self):
#
# Binomial Tree
#
node = Tree(n_children=2)
node.split()
count = 0
pos = [0, 1]
for child in node.get_children():
self.assertEqual(child.get_node_position(), pos[count],\
'Incorrect child.')
count += 1
# Reversed
count = 0
for child in node.get_children(reverse=True):
self.assertEqual(child.get_node_position(), pos[-1 - count])
count += 1
# Flagged
child_0 = node.get_child(0)
child_0.mark(1)
for child in node.get_children(flag=1):
self.assertEqual(child, child_0, \
'The only marked child is child_0')
#
# Quadtree
#
node = Tree(n_children=4)
node.split()
count = 0
pos = [0, 1, 2, 3]
for child in node.get_children():
self.assertEqual(child.get_node_position(), pos[count],\
'Incorrect child.')
count += 1
#
# Now remove child
#
node.delete_children(position=0)
count = 0
for child in node.get_children():
count += 1
self.assertEqual(count, 3, 'There should only be 3 children left.')
#
# Node with no children
#
node = Tree(n_children=4)
for child in node.get_children():
print('Hallo')
#
# Try a logical statement
#
self.assertFalse(any([child.is_marked(1) for \
child in node.get_children()]), \
'No marked children because there are none.')
def test_record(self):
forest = Forest([Tree(2), Tree(2), Tree(2)])
for dummy in range(5):
for child in forest.get_children():
if np.random.rand() > 0.5:
child.split()
forest.record(1)
for tree in forest.traverse():
self.assertTrue(tree.is_marked(1))
def test_constructor(self):
# Must at least specify number of children
self.assertRaises(Exception, Tree)
# Quadnode
node = Tree(n_children=4)
self.assertEqual(len(node._children), 4, 'There should be 4 children.')
# Tree in a forest
forest = Forest()
node = Tree(forest=forest, n_children=2)
def test_get_children(self):
forest = Forest()
self.assertEqual(forest.get_children(), [])
forest = Forest([Tree(1), Tree(3), Tree(10)])
n_children = [1, 3, 10]
i = 0
for child in forest.get_children():
self.assertEqual(child.get_node_position(), i)
self.assertEqual(child.n_children(), n_children[i])
i += 1
def test_find_node(self):
t0 = Tree(2)
t1 = Tree(3)
forest = Forest([t0, t1])
t0.split()
t00 = t0.get_child(0)
t00.split()
t001 = t00.get_child(1)
self.assertEqual(forest.find_node([0, 0, 1]), t001)
self.assertIsNone(forest.find_node([4, 5, 6]))
def test_constructor(self):
t0 = Tree(2)
# Check whether all entries are Trees
self.assertRaises(Exception, Forest, **{'trees': [t0, 0]})
# Check whether Trees are roots
t0.split()
t00 = t0.get_child(0)
self.assertRaises(Exception, Forest, **{'trees': [t0, t00]})
t1 = Tree(4)
forest = Forest([t0, t1])
self.assertEqual(len(forest._trees), 2)
def test_get_parent(self):
count = 0
pos1 = [0, 0]
pos2 = [1, 3]
for node in [Tree(n_children=2), Tree(n_children=4)]:
node.mark(1)
node.split()
child = node.get_child(pos1[count])
child.split()
self.assertEqual(node,node.get_child(pos2[count]).get_parent(1),\
'First marked ancestor should be node.')
child.mark(1)
self.assertEqual(child, child.get_child(pos2[count]).get_parent(1),\
'First marked ancestor should be child.')
count += 1
def test_has_trees(self):
# Empty forest has no trees
forest = Forest()
self.assertFalse(forest.has_children())
# Forest with two trees
t0 = Tree(2)
t1 = Tree(3)
forest = Forest([t0, t1])
self.assertTrue(forest.has_children())
self.assertFalse(forest.has_children(flag=0))
# Mark one tree
t0.mark(0)
self.assertTrue(forest.has_children(flag=0))
self.assertFalse(forest.has_children(flag=1))
def test_get_root(self):
root_node = Tree(n_children=3)
node = root_node
for _ in range(10):
node.split()
node = node.get_child(0)
self.assertEqual(node.get_root(),root_node,\
'All children should have the same root node')
def test_has_parent(self):
for node in [Tree(n_children=2), Tree(n_children=4)]:
node.split()
for child in node.get_children():
self.assertTrue(child.has_parent(),\
'Nodes children should have a parent.')
node.mark(1)
for child in node.get_children():
self.assertTrue(child.has_parent(1), \
'Children should have parent labeled 1.')
self.assertFalse(child.has_parent(2),\
'Children do not have parent labeled 2.')
self.assertFalse(node.has_parent(1), \
'Root node should not have parents of type 1.')
self.assertFalse(node.has_parent(), \
'Root node should not have parents.')
def test_remove(self):
#
# Remove child 2
#
node = Tree(n_children=4)
node.split()
child = node.get_child(2)
child.remove()
self.assertIsNone(node.get_child(2))
def test_add_remove_tree(self):
forest = Forest()
self.assertEqual(forest.n_children(), 0)
node = Tree(3)
forest.add_tree(node)
self.assertEqual(forest.n_children(), 1)
self.assertRaises(Exception, forest.add_tree, *(1, ))
forest.remove_tree(0)
self.assertEqual(forest.n_children(), 0)
def test_contains(self):
root_node = Tree(n_children=4)
self.assertTrue(root_node.contains(root_node))
node = root_node
for dummy in range(4):
node.split()
node = node.get_child(0)
self.assertTrue(root_node.contains(node))
self.assertFalse(node.contains(root_node))
def test_depth(self):
#
# Generate forest
#
forest = Forest([Tree(2), Tree(2)])
#
# Split tree 0 three times
#
tree = forest.get_child(0)
for dummy in range(3):
tree.split()
tree = tree.get_child(0)
# Check that depth is 3
self.assertEqual(forest.depth(), 3)
# Remove split tree and verify that depth is 0
forest.remove_tree(0)
self.assertEqual(forest.depth(), 0)
def test_find_node(self):
node = Tree(n_children=4)
address = [0, 2, 3, 0]
# No-one lives at this address: return None
self.assertIsNone(node.find_node(address))
# Generate node with given address and try to recover it.
for a in address:
node.split()
node = node.get_child(a)
self.assertEqual(node, node.get_root().find_node(address))
def test_set_node_type(self):
# Define a new node
node = Tree(n_children=3)
# Should complain about changing root to branch
self.assertRaises(Exception, node.set_node_type, *('BRANCH'))
# Split
node.split()
child = node.get_child(0)
self.assertRaises(Exception, child.set_node_type, *('ROOT'))
self.assertRaises(Exception, child.set_node_type, *('BRANCH'))
def test_delete_children(self):
#
# Delete child 2
#
node = Tree(n_children=4)
node.split()
node.delete_children(2)
self.assertIsNone(node.get_child(2))
#
# Delete all children
#
node.delete_children()
self.assertFalse(node.has_children())
def test_get_depth(self):
# New node should have depth 0
node = Tree(n_children=2)
self.assertEqual(node.get_depth(), 0, 'ROOT node should have depth 0')
# Split node 10 times
for _ in range(10):
node.split()
node = node.get_child(1)
# Last generation should have depth 10
self.assertEqual(node.get_depth(), 10, 'Node should have depth 10.')
self.assertEqual(node.get_root().get_depth(), 0, \
'ROOT node should have depth 0')
def test_n_children(self):
for n in range(10):
#
# Define regular node with n children
#
node = Tree(n_children=n)
# check if number of children correct
self.assertEqual(node.n_children(),n,\
'Number of children incorrect')
# split node and check if children inherit the same number of children
node.split()
for child in node.get_children():
self.assertEqual(child.n_children(),n,\
'Children have incorrect number of children.')
def test_get_child(self):
# New node
node = Tree(n_children=5)
node.split()
# Access child directly and mark it 1
child_4 = node._children[4]
child_4.mark(1)
# Access child via function
child_4_v1 = node.get_child(4)
# Check whether it's the same child.
self.assertTrue(child_4_v1.is_marked(1), 'Child 4 should be marked 1.')
self.assertEqual(child_4_v1, child_4, 'Children should be the same.')
def test_in_forest(self):
#
# Initialize forest with node
#
node = Tree(n_children=2)
Forest([node])
self.assertTrue(node.in_forest(), 'Node should be in forest')
#
# Initialize empty forest
#
node = Tree(n_children=2)
forest = Forest()
# Node should not be in there
self.assertFalse(node.in_forest(), 'Node should not be in a forest.')
# Add node: NOW it's in the forest.
forest.add_tree(node)
self.assertTrue(node.in_forest(), 'Node should be in a forest.')
# Remove node: it should no longer be there.
forest.remove_tree(node.get_node_position())
self.assertFalse(node.in_forest(),
'Node should no longer be in the forest.')
def test_tree_depth(self):
# New node should have depth 0
node = Tree(n_children=2)
self.assertEqual(node.tree_depth(),0,\
'Tree should have depth 0')
# Split node 10 times
for i in range(10):
node.split()
node = node.get_child(1)
# All nodes should have the same tree_depth
self.assertEqual(node.tree_depth(),10,\
'Tree should have depth 10.')
self.assertEqual(node.get_root().tree_depth(),10,\
'Tree should have depth 10.')
def test_get_node_type(self):
# Define new ROOT node
node = Tree(n_children=2)
self.assertEqual(node.get_node_type(),'ROOT',\
'Output "node_type" should be "ROOT".')
# Split node and assert that its child is a LEAF
node.split()
child = node.get_child(0)
self.assertEqual(node.get_node_type(),'ROOT',\
'Output "node_type" should be "ROOT".')
self.assertEqual(child.get_node_type(),'LEAF',\
'Output "node_type" should be "LEAF".')
# Split the child and assert that it is now a BRANCH
child.split()
self.assertEqual(child.get_node_type(),'BRANCH',\
'Output "node_type" should be "BRANCH".')
def test_is_marked(self):
#
# Mark new node (generic)
#
node = Tree(n_children=4)
node.mark()
self.assertTrue(node.is_marked(), 'Node should be marked.')
#
# Unmark node
#
node.unmark()
self.assertFalse(node.is_marked(), 'Node should not be marked.')
#
# Mark node (specific)
#
node.mark(1)
self.assertTrue(node.is_marked(), 'Node should be marked.')
self.assertTrue(node.is_marked(1), 'Node should be marked 1.')
self.assertFalse(node.is_marked(2), 'Node should not be marked 2.')
def test_refine(self):
# =====================================================================
# Simple Refineement
# =====================================================================
# Define a new forest with two binary trees
forest = Forest([Tree(2), Tree(2)])
# Refine the forest indiscriminantly
forest.refine()
# Check wether the trees have been split
count = 0
for dummy in forest.traverse():
count += 1
self.assertEqual(count, 6)
# =====================================================================
# Refinement Label
# =====================================================================
# Mark second tree and refine only by its label
forest.get_child(1).mark(1)
forest.refine(refinement_flag=1)
# Nothing should have happened (because child is not a leaf)
count = 0
for dummy in forest.traverse():
count += 1
self.assertEqual(count, 6)
forest.get_child(1).get_child(1).mark(1)
forest.refine(refinement_flag=1)
count = 0
for dummy in forest.traverse():
count += 1
self.assertEqual(count, 8)
# =====================================================================
# Refinement of subforest
# =====================================================================
forest = Forest([Tree(2), Tree(2)])
forest.refine()
# Define subforest
forest.get_child(0).get_child(0).mark(1)
forest.root_subtrees(1)
# Check node count
count = 0
for dummy in forest.traverse(1):
count += 1
self.assertEqual(count, 4)
forest.refine(subforest_flag=1)
# Check node count
count = 0
for dummy in forest.traverse(1):
count += 1
self.assertEqual(count, 10)
forest.coarsen(subforest_flag=1)
count = 0
for dummy in forest.traverse(1):
count += 1
self.assertEqual(count, 4)
# Now try with a refinement flag
forest.get_child(1).mark(2)
forest.refine(subforest_flag=1, refinement_flag=2)
# Check node count
count = 0
for dummy in forest.traverse(1):
count += 1
self.assertEqual(count, 6)
# =====================================================================
# Refine with new label
# =====================================================================
forest = Forest([Tree(2), Tree(2)])
forest.refine()
# Define subforest
forest.get_child(0).get_child(0).mark(1)
forest.root_subtrees(1)
# Check node count
count = 0
for dummy in forest.traverse(1):
count += 1
self.assertEqual(count, 4)
forest.refine(subforest_flag=1, new_label=4)
# Node count of new label
count = 0
for dummy in forest.traverse(4):
count += 1
self.assertEqual(count, 10)
# Node count for original submesh
count = 0
for dummy in forest.traverse(1):
count += 1
self.assertEqual(count, 4)
# Refinement marker
forest.get_child(1).mark(3)
# Refine
forest.refine(subforest_flag=1, refinement_flag=3, new_label=5)
# Check node count
count = 0
for dummy in forest.traverse(5):
count += 1
self.assertEqual(count, 6)
def test_traverse(self):
#
# Binary Tree
#
# Standard
node = Tree(2)
forest = Forest([node])
node.split()
node.get_child(0).split()
node.get_child(0).get_child(1).remove()
addresses = {
'breadth-first': [[0], [0, 0], [0, 1], [0, 0, 0]],
'depth-first': [[0], [0, 0], [0, 0, 0], [0, 1]]
}
for mode in ['depth-first', 'breadth-first']:
count = 0
for leaf in forest.traverse(mode=mode):
self.assertEqual(leaf.get_node_address(),
addresses[mode][count]),
count += 1
#
# QuadTree
#
node = Tree(4)
forest = Forest([node])
node.split()
node.get_child(1).split()
node.get_child(1).get_child(2).remove()
addresses = [[0], [0, 0], [0, 1], [0, 2], [0, 3], [0, 1, 0], [0, 1, 1],
[0, 1, 3]]
count = 0
for n in node.traverse(mode='breadth-first'):
self.assertEqual(n.get_node_address(), addresses[count],\
'Incorrect address.')
count += 1
#
# Forest with one quadtree and one bitree
#
bi = Tree(2)
quad = Tree(4)
forest = Forest([bi, quad])
bi.split()
bi.get_child(0).split()
quad.split()
addresses = {
'breadth-first': [[0], [1], [0, 0], [0, 1], [1, 0], [1, 1], [1, 2],
[1, 3], [0, 0, 0], [0, 0, 1]],
'depth-first': [[0], [0, 0], [0, 0, 0], [0, 0, 1], [0, 1], [1],
[1, 0], [1, 1], [1, 2], [1, 3]]
}
for mode in ['depth-first', 'breadth-first']:
count = 0
for leaf in forest.traverse(mode=mode):
self.assertEqual(leaf.get_node_address(),
addresses[mode][count])
count += 1
def test_coarsen(self):
# =====================================================================
# Simple Coarsening
# =====================================================================
# Define a new forest with two quadtrees
forest = Forest([Tree(4), Tree(4)])
# Coarsen, nothing should happen
forest.coarsen()
# Check that forest is as it was
count = 0
for dummy in forest.traverse():
count += 1
self.assertEqual(count, 2)
# Refine and coarsen again
forest.refine()
forest.coarsen()
# Check that forest is as it was
count = 0
for dummy in forest.traverse():
count += 1
self.assertEqual(count, 2)
# =====================================================================
# Coarsening Flag
# =====================================================================
# Refine and mark one grandchild
forest.refine()
# Check that forest now has 10 Tree
count = 0
for dummy in forest.traverse():
count += 1
self.assertEqual(count, 10)
forest.get_child(0).mark(1)
forest.coarsen(coarsening_flag=1)
# Tree 0 should not have children, while Tree 1 should have 4
count = 0
for dummy in forest.traverse():
count += 1
self.assertEqual(count, 6)
self.assertFalse(forest.get_child(0).has_children())
self.assertTrue(forest.get_child(1).has_children())
# Nothing is marked 1
self.assertFalse(any(
child.is_marked(1) for child in forest.traverse()))
# =====================================================================
# Coarsening with subforests
# =====================================================================
forest = Forest([Tree(2), Tree(2)])
forest.refine()
# Make a subforest 0, 00, 01, 1
forest.get_child(0).get_child(0).mark(2)
forest.root_subtrees(2)
count = 0
for node in forest.traverse(flag=2):
count += 1
self.assertEqual(count, 4)
# Coarsen the subforest
forest.coarsen(subforest_flag=2)
# Subforest now contains [0], [1]
count = 0
for dummy in forest.traverse(flag=2):
count += 1
self.assertEqual(count, 2)
# Forest still contains 4 nodes (0,1,00,01,10,11)
count = 0
for dummy in forest.traverse():
count += 1
self.assertEqual(count, 6)
# New subforest: 0, 00, 01, 1
forest.get_child(0).get_child(0).mark(2)
forest.root_subtrees(2)
# Count subforest nodes
count = 0
for dummy in forest.traverse(2):
count += 1
self.assertEqual(count, 4)
# Coarsening flag at a node not in the subforest
forest.get_child(1).get_child(1).mark(1)
forest.coarsen(subforest_flag=2, coarsening_flag=1)
# Count subforest nodes
count = 0
for dummy in forest.traverse(2):
count += 1
self.assertEqual(count, 4)
# Apply coarsening flag to a node in the subforest
forest.get_child(0).mark(1)
# Coarsen
forest.coarsen(subforest_flag=2, coarsening_flag=1)
# Now there should be 2 subnodes
count = 0
for dummy in forest.traverse(2):
count += 1
self.assertEqual(count, 2)
# Make sure the coarsening flag is deleted.
self.assertFalse(forest.get_child(0).is_marked(1))
# =====================================================================
# Coarsening with new_label
# =====================================================================
# TODO: TEST HERE.
# Subforest is: 0, 00, 01, 1
forest.get_child(0).get_child(0).mark(2)
forest.root_subtrees(2)
# Mark [0,0] with coarsening flag
forest.get_child(0).mark(1)
# Coarsen subforest and label with new_label
forest.coarsen(subforest_flag=2,
coarsening_flag=1,
new_label=3,
debug=True)
# Check that subforest still has the same nodes
count = 0
for dummy in forest.traverse(2):
count += 1
self.assertEqual(count, 4)
# Check that the new submesh has fewer
count = 0
for dummy in forest.traverse(3):
count += 1
self.assertEqual(count, 2)
#
# Now with no submesh
#
# Check that forest still has 6 nodes
count = 0
for dummy in forest.traverse():
count += 1
self.assertEqual(count, 6)
# Mark with coarsening flag
forest.get_child(0).mark(1)
# Coarsen
forest.coarsen(coarsening_flag=1, new_label=4)
# Check that forest still has 6 nodes
count = 0
for dummy in forest.traverse():
count += 1
self.assertEqual(count, 6)
# Check that subforest has 5 nodes
count = 0
for dummy in forest.traverse(4):
count += 1
self.assertEqual(count, 4)
def test_child(self):
forest = Forest()
self.assertRaises(Exception, forest.get_child, *(0, ))
forest = Forest([Tree(1), Tree(4)])
self.assertEqual(forest.get_child(1).n_children(), 4)
