Python paired_query_id 예제들

예제 #1

파일: test_metagenomics.py 프로젝트: tianyabeef/viral-ngs

def test_paired_query_id():
    tup = ['query', 'gi|10|else', 90., 80, 60, 2, 30, 80,
           1100, 1150, 1e-7, 64.5]

    blast1 = metagenomics.BlastRecord(*tup)
    assert metagenomics.paired_query_id(blast1) == blast1

    new_tup = copy.copy(tup)
    new_tup[0] = 'query/1'
    new_blast1 = metagenomics.BlastRecord(*new_tup)
    assert metagenomics.paired_query_id(new_blast1) == blast1

    new_tup = copy.copy(tup)
    new_tup[0] = 'query/2'
    new_blast1 = metagenomics.BlastRecord(*new_tup)
    assert metagenomics.paired_query_id(new_blast1) == blast1

    new_tup = copy.copy(tup)
    new_tup[0] = 'query/3'
    new_blast1 = metagenomics.BlastRecord(*new_tup)
    assert metagenomics.paired_query_id(new_blast1) == new_blast1

예제 #2

파일: test_metagenomics.py 프로젝트: sudarshangc/viral-ngs

def test_paired_query_id():
    tup = ['query', 'gi|10|else', 90., 80, 60, 2, 30, 80,
           1100, 1150, 1e-7, 64.5, []]

    blast1 = metagenomics.BlastRecord(*tup)
    assert metagenomics.paired_query_id(blast1) == blast1

    new_tup = copy.copy(tup)
    new_tup[0] = 'query/1'
    new_blast1 = metagenomics.BlastRecord(*new_tup)
    assert metagenomics.paired_query_id(new_blast1) == blast1

    new_tup = copy.copy(tup)
    new_tup[0] = 'query/2'
    new_blast1 = metagenomics.BlastRecord(*new_tup)
    assert metagenomics.paired_query_id(new_blast1) == blast1

    new_tup = copy.copy(tup)
    new_tup[0] = 'query/3'
    new_blast1 = metagenomics.BlastRecord(*new_tup)
    assert metagenomics.paired_query_id(new_blast1) == new_blast1